|
Name |
Accession |
Description |
Interval |
E-value |
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
80-664 |
9.46e-99 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 314.80 E-value: 9.46e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 80 MARRLPQLVRRSLGLAWRvDRPATVGLLACQTLSGVVQAMGLLAISGTLTALLSSGDvlhrLVQAWPSLALLAGAAAVRA 159
Cdd:COG1132 1 MSKSPRKLLRRLLRYLRP-YRGLLILALLLLLLSALLELLLPLLLGRIIDALLAGGD----LSALLLLLLLLLGLALLRA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 160 VLGITVSWLSSRLGPLMTREAEQMLLDGCTGVELCAYDEPDFNRDREAADRGAQVTGDLINEG-QDLIASAASFLAGAVV 238
Cdd:COG1132 76 LLSYLQRYLLARLAQRVVADLRRDLFEHLLRLPLSFFDRRRTGDLLSRLTNDVDAVEQFLAHGlPQLVRSVVTLIGALVV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 239 LAGVHPVL-LPMLVAASLPQAVAQVSAARVR--YLANLRSNGDY--RLLAMLRwhiytkdAADQIRAGTMAGFLSGRYRQ 313
Cdd:COG1132 156 LFVIDWRLaLIVLLVLPLLLLVLRLFGRRLRklFRRVQEALAELngRLQESLS-------GIRVVKAFGREERELERFRE 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 314 TVARINREDRAAADKGARMSLAGAACGGLGSAIVWAAVVGLLATGRISVGHAGTAVFALQTVGQSVRGLVSIGSRAMRTG 393
Cdd:COG1132 229 ANEELRRANLRAARLSALFFPLMELLGNLGLALVLLVGGLLVLSGSLTVGDLVAFILYLLRLFGPLRQLANVLNQLQRAL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 394 LYMDDWTRFLDRAGGFRMRRGT-CRPASPERIEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLAC 472
Cdd:COG1132 309 ASAERIFELLDEPPEIPDPPGAvPLPPVRGEIEFENVSFSYPG-DRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLL 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 473 GLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENITLGQPSsRGDTAVREACEAAGADEVVDKLGAGL 552
Cdd:COG1132 388 RFYDPTSGRILIDGVDIRDLTLESLRRQIGVVPQDTFLFSGTIRENIRYGRPD-ATDEEVEEAAKAAQAHEFIEALPDGY 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 553 DTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADR 632
Cdd:COG1132 467 DTVVGE---RGVNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGRTTIVIAHRLSTIRNADR 543
|
570 580 590
....*....|....*....|....*....|..
gi 512154901 633 IVVLDEGAVVQEGTYQELARQPGLFRQLLSYQ 664
Cdd:COG1132 544 ILVLDDGRIVEQGTHEELLARGGLYARLYRLQ 575
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
214-665 |
6.97e-85 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 281.72 E-value: 6.97e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 214 VTGDLInegqDLIASAASFLAGAVVLAGVHPVLLPMLVAASLPQA-VAQVSAARVRYLANLRSNGDYRLLAMLRWHIYtk 292
Cdd:COG2274 269 LTGSLL----TALLDLLFVLIFLIVLFFYSPPLALVVLLLIPLYVlLGLLFQPRLRRLSREESEASAKRQSLLVETLR-- 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 293 dAADQIRAGTMAGFLSGRYRQTVARINREDRAAADKGARMSLAGAACGGLGSAIVWAAVVGLLATGRISVGHAGTAVFAL 372
Cdd:COG2274 343 -GIETIKALGAESRFRRRWENLLAKYLNARFKLRRLSNLLSTLSGLLQQLATVALLWLGAYLVIDGQLTLGQLIAFNILS 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 373 QTVGQSVRGLVSIGSRAMRTGLYMDDWTRFLD----RAGGFRMRRgtcRPASPERIEIEAVCHRYAGKGGDALANVSLTL 448
Cdd:COG2274 422 GRFLAPVAQLIGLLQRFQDAKIALERLDDILDlppeREEGRSKLS---LPRLKGDIELENVSFRYPGDSPPVLDNISLTI 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 449 RRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENITLGQPSsRG 528
Cdd:COG2274 499 KPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQIGVVLQDVFLFSGTIRENITLGDPD-AT 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 529 DTAVREACEAAGADEVVDKLGAGLDTLLArEwlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRL 608
Cdd:COG2274 578 DEEIIEAARLAGLHDFIEALPMGYDTVVG-E--GGSNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENL 654
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 609 RDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLSYQV 665
Cdd:COG2274 655 RRLLKGRTVIIIAHRLSTIRLADRIIVLDKGRIVEDGTHEELLARKGLYAELVQQQL 711
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
418-655 |
2.10e-74 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 250.06 E-value: 2.10e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 418 PASPERIEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAL 497
Cdd:COG4988 331 AAGPPSIELEDVSFSYPG-GRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASW 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 WQHVALVPQDYARWPLTVRENITLGQPSSrGDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALG 577
Cdd:COG4988 410 RRQIAWVPQNPYLFAGTIRENLRLGRPDA-SDEELEAALEAAGLDEFVAALPDGLDTPLGE---GGRGLSGGQAQRLALA 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPG 655
Cdd:COG4988 486 RALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALLAQADRILVLDDGRIVEQGTHEELLAKNG 563
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
225-662 |
2.62e-71 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 241.98 E-value: 2.62e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 225 LIASAASFLAGAVVLAGVHP-----VLLPMLVAASL-PQAVAQVSAARVRYLANLRSNGDYRLLAMLRwhiytkdAADQI 298
Cdd:COG4987 136 LLVALLVILAAVAFLAFFSPalalvLALGLLLAGLLlPLLAARLGRRAGRRLAAARAALRARLTDLLQ-------GAAEL 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 299 RAgtmagflSGRYRQTVARINREDRAAADKGARMSLAGAACGGLGSAIVWAAVVGLLATGRISVGHAGT-----AVFALQ 373
Cdd:COG4987 209 AA-------YGALDRALARLDAAEARLAAAQRRLARLSALAQALLQLAAGLAVVAVLWLAAPLVAAGALsgpllALLVLA 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 374 TVGqSVRGLVSIGSRAMRTGLYMDDWTR---FLDRAGGFRMRRGTCRPASPERIEIEAVCHRYAGKGGDALANVSLTLRR 450
Cdd:COG4987 282 ALA-LFEALAPLPAAAQHLGRVRAAARRlneLLDAPPAVTEPAEPAPAPGGPSLELEDVSFRYPGAGRPVLDGLSLTLPP 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 451 GEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENITLGQPSSrGDT 530
Cdd:COG4987 361 GERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRRIAVVPQRPHLFDTTLRENLRLARPDA-TDE 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 531 AVREACEAAGADEVVDKLGAGLDTllareWL--NGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRL 608
Cdd:COG4987 440 ELWAALERVGLGDWLAALPDGLDT-----WLgeGGRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADL 514
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 512154901 609 RDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLS 662
Cdd:COG4987 515 LEALAGRTVLLITHRLAGLERMDRILVLEDGRIVEQGTHEELLAQNGRYRQLYQ 568
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
424-639 |
2.04e-64 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 210.70 E-value: 2.04e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENItlgqpssrgdtavreaceaagadevvdklgagldtllarewlngeeLSGGQWQRIALGRAFFRQ 583
Cdd:cd03228 81 VPQDPFLFSGTIRENI----------------------------------------------LSGGQRQRIAIARALLRD 114
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEG 639
Cdd:cd03228 115 PPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
423-645 |
2.33e-60 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 201.66 E-value: 2.33e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWPLTVRENITLGQPSSRgDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFR 582
Cdd:cd03245 82 YVPQDVTLFYGTLRDNITLGAPLAD-DERILRAAELAGVTDFVNKHPNGLDLQIGE---RGRGLSGGQRQAVALARALLN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEG 645
Cdd:cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
424-660 |
4.15e-60 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 201.31 E-value: 4.15e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENITLGQPSSrGDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQ 583
Cdd:cd03251 81 VSQDVFLFNDTVAENIAYGRPGA-TREEVEEAARAANAHEFIMELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQL 660
Cdd:cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
423-655 |
1.95e-58 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 196.68 E-value: 1.95e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYaGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:cd03254 2 EIEFENVNFSY-DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWPLTVRENITLGQPSSRgDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFR 582
Cdd:cd03254 81 VVLQDTFLFSGTIMENIRLGRPNAT-DEEVIEAAKEAGAHDFIMKLPNGYDTVLGE---NGGNLSQGERQLLAIARAMLR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPG 655
Cdd:cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
307-664 |
1.24e-56 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 202.25 E-value: 1.24e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 307 LSGRYRQTVARINREDRAAADKGARMSLAGAA-------CGGLGSAIVWAAVVGLLATGRISVGHAGTAVFALQTVGQSV 379
Cdd:TIGR02203 208 LFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIsspitqlIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPL 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 380 RGLVSIgSRAMRTGLY--------------MDDWTRFLDRAGGfrmrrgtcrpaspeRIEIEAVCHRYAGKGGDALANVS 445
Cdd:TIGR02203 288 KSLTNV-NAPMQRGLAaaeslftlldsppeKDTGTRAIERARG--------------DVEFRNVTFRYPGRDRPALDSIS 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 446 LTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENITLGQPS 525
Cdd:TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 526 SRGDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIF 605
Cdd:TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGE---NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQ 509
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 606 QRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLSYQ 664
Cdd:TIGR02203 510 AALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
424-664 |
2.38e-55 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 188.59 E-value: 2.38e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:cd03253 1 IEFENVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENITLGQPSSrGDTAVREACEAAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQ 583
Cdd:cd03253 80 VPQDTVLFNDTIGYNIRYGRPDA-TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGER---GLKLSGGEKQRVAIARAILKN 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLSY 663
Cdd:cd03253 156 PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235
|
.
gi 512154901 664 Q 664
Cdd:cd03253 236 Q 236
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
424-664 |
2.69e-55 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 188.85 E-value: 2.69e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENITLGQPSSRGDTaVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQ 583
Cdd:cd03252 81 VLQENVLFNRSIRDNIALADPGMSMER-VIEAAKLAGAHDFISELPEGYDTIVGE---QGAGLSGGQRQRIAIARALIHN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLSY 663
Cdd:cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQL 236
|
.
gi 512154901 664 Q 664
Cdd:cd03252 237 Q 237
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
424-659 |
1.72e-54 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 186.00 E-value: 1.72e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:COG1122 1 IELENLSFSYPG-GTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDyarwP------LTVRENIT-----LGQPSSRGDTAVREACEAagadevvdklgAGLDTLLAREWLngeELSGGQWQ 572
Cdd:COG1122 80 VFQN----PddqlfaPTVEEDVAfgpenLGLPREEIRERVEEALEL-----------VGLEHLADRPPH---ELSGGQKQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 573 RIALgraffrqAG-------LLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNVA-VADRIVVLDEGAVVQ 643
Cdd:COG1122 142 RVAI-------AGvlamepeVLVLDEPTAGLDPRGRRELLELLKRLNKEGKtVIIVTHDLDLVAeLADRVIVLDDGRIVA 214
|
250
....*....|....*.
gi 512154901 644 EGTYQELARQPGLFRQ 659
Cdd:COG1122 215 DGTPREVFSDYELLEE 230
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
423-649 |
2.18e-54 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 198.17 E-value: 2.18e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWPLTVRENITLGQPSSRgDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFR 582
Cdd:TIGR03375 543 YVPQDPRLFYGTLRDNIALGAPYAD-DEEILRAAELAGVTEFVRRHPDGLDMQIGE---RGRSLSGGQRQAVALARALLR 618
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQE 649
Cdd:TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ 685
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
441-664 |
2.69e-53 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 183.12 E-value: 2.69e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENIT 520
Cdd:cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 521 LGQPSsRGDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRA 600
Cdd:cd03249 99 YGKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 601 EYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLSYQ 664
Cdd:cd03249 175 EKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
418-636 |
4.90e-53 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 190.96 E-value: 4.90e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 418 PASPERIEIEAVCHRYAGKGgDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAL 497
Cdd:TIGR02857 316 AAPASSLEFSGVSVAYPGRR-PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 WQHVALVPQDYARWPLTVRENITLGQPSSrGDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALG 577
Cdd:TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPDA-SDAEIREALERAGLDEFVAALPQGLDTPIGE---GGAGLSGGQAQRLALA 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVL 636
Cdd:TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
423-646 |
2.41e-51 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 178.70 E-value: 2.41e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:COG1120 1 MLEAENLSVGYGGR--PVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDY-ARWPLTVRENITLG---------QPSSRGDTAVREACEAAGADEvvdklgagldtLLAREWlngEELSGGQWQ 572
Cdd:COG1120 79 YVPQEPpAPFGLTVRELVALGryphlglfgRPSAEDREAVEEALERTGLEH-----------LADRPV---DELSGGERQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 573 RIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRItNVA--VADRIVVLDEGAVVQEGT 646
Cdd:COG1120 145 RVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARErgRTVVMVLHDL-NLAarYADRLVLLKDGRIVAQGP 221
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
411-667 |
2.90e-51 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 187.36 E-value: 2.90e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 411 MRRGTCRPASPERIEIEAV-CHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGlYLPTEGRVLWDGTPT 489
Cdd:PRK11174 335 PQQGEKELASNDPVTIEAEdLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIEL 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 490 GDADPHALWQHVALVPQDYARWPLTVRENITLGQPSSrGDTAVREACEAAGADEVVDKLGAGLDTLLarewlnGEE---L 566
Cdd:PRK11174 414 RELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDA-SDEQLQQALENAWVSEFLPLLPQGLDTPI------GDQaagL 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 567 SGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGT 646
Cdd:PRK11174 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGD 566
|
250 260
....*....|....*....|.
gi 512154901 647 YQELARQPGLFRQLLSYQVTS 667
Cdd:PRK11174 567 YAELSQAGGLFATLLAHRQEE 587
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
424-653 |
4.95e-51 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 177.18 E-value: 4.95e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDaDPHALWQHVAL 503
Cdd:COG1131 1 IEVRGLTKRYGDK--TALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR-DPAEVRRRIGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITL-----GQPSSRGDTAVREACEAAGADEVVDKLgagldtllarewlnGEELSGGQWQRIALG 577
Cdd:COG1131 78 VPQEPALYPdLTVRENLRFfarlyGLPRKEARERIDELLELFGLTDAADRK--------------VGTLSGGMKQRLGLA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQ 653
Cdd:COG1131 144 LALLHDPELLILDEPTSGLDPEARRELWELLRELAAEgKTVLLSTHYLEEAeRLCDRVAIIDKGRIVADGTPDELKAR 221
|
|
| MsbA_rel |
TIGR02204 |
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ... |
233-664 |
7.83e-51 |
|
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Pssm-ID: 131259 [Multi-domain] Cd Length: 576 Bit Score: 186.06 E-value: 7.83e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 233 LAGAVVLAGVHPVLLPMLVAASLPQAVAQVS--AARVRYLAnlRSNGDyRLLAMlrwHIYTKDAADQIRagTMAGFlsGR 310
Cdd:TIGR02204 146 CIGGLIMMFITSPKLTSLVLLAVPLVLLPILlfGRRVRKLS--RESQD-RIADA---GSYAGETLGAIR--TVQAF--GH 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 311 YRQTVARINREDRAAADKGARMSLAGAACGGLGSAIVWAAVVGLL-------ATGRISVGHAGTAVFALQTVGQSVRGLV 383
Cdd:TIGR02204 216 EDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLwvgahdvIAGKMSAGTLGQFVFYAVMVAGSIGTLS 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 384 SIGSRAMRTGLYMDDWTRFLdraggfRMRRGTCRPASPE--------RIEIEAVCHRYAGKGGD-ALANVSLTLRRGEVT 454
Cdd:TIGR02204 296 EVWGELQRAAGAAERLIELL------QAEPDIKAPAHPKtlpvplrgEIEFEQVNFAYPARPDQpALDGLNLTVRPGETV 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 455 ALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENITLGQPSSrGDTAVRE 534
Cdd:TIGR02204 370 ALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDA-TDEEVEA 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 535 ACEAAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD 614
Cdd:TIGR02204 449 AARAAHAHEFISALPEGYDTYLGER---GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG 525
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 512154901 615 RIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLSYQ 664
Cdd:TIGR02204 526 RTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
425-639 |
8.01e-47 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 164.56 E-value: 8.01e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 425 EIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALV 504
Cdd:cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 505 PQDyarwP------LTVRENI-----TLGQPSSRGDTAVREACEAagadevvdklgAGLDTLLARewlNGEELSGGQWQR 573
Cdd:cd03225 81 FQN----PddqffgPTVEEEVafgleNLGLPEEEIEERVEEALEL-----------VGLEGLRDR---SPFTLSGGQKQR 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNVA-VADRIVVLDEG 639
Cdd:cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKtIIIVTHDLDLLLeLADRVIVLEDG 210
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
354-661 |
3.61e-46 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 174.91 E-value: 3.61e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 354 LLATGRISVGHAGTAVFALQTVGQSVRGLVSIGSRAMRTGLYMDDWTRFLDRAGGFRMRrGTCRPASPE-RIEIEAVCHR 432
Cdd:TIGR00958 409 LVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT-GTLAPLNLEgLIEFQDVSFS 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 433 YAGKGG-DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARW 511
Cdd:TIGR00958 488 YPNRPDvPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF 567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 512 PLTVRENITLGQPSSRgDTAVREACEAAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAGLLVLDE 591
Cdd:TIGR00958 568 SGSVRENIAYGLTDTP-DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK---GSQLSGGQKQRIAIARALVRKPRVLILDE 643
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 592 PTANLDPRAEYrIFQRLRDLArDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLL 661
Cdd:TIGR00958 644 ATSALDAECEQ-LLQESRSRA-SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
424-660 |
6.80e-45 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 171.08 E-value: 6.80e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYaGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:TIGR01193 474 IVINDVSYSY-GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENITLGQPSSRGDTAVREACEAAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQ 583
Cdd:TIGR01193 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE---GSSISGGQKQRIALARALLTD 629
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLaRDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQL 660
Cdd:TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
424-645 |
1.01e-44 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 158.84 E-value: 1.01e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVAL 503
Cdd:cd03259 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER--RNIGM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITLGQPSSRGDTAVREACEAAGADEVvdklgaGLDTLLAREwlnGEELSGGQWQRIALGRAFFR 582
Cdd:cd03259 77 VFQDYALFPhLTVAENIAFGLKLRGVPKAEIRARVRELLELV------GLEGLLNRY---PHELSGGQQQRVALARALAR 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITN-VAVADRIVVLDEGAVVQEG 645
Cdd:cd03259 148 EPSLLLLDEPLSALDAKLREELREELKELQRELgiTTIYVTHDQEEaLALADRIAVMNEGRIVQVG 213
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
397-664 |
1.34e-44 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 168.66 E-value: 1.34e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 397 DDWTRFLDRAGGfrmrrgtcrpaspeRIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYL 476
Cdd:PRK11176 329 DEGKRVIERAKG--------------DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 477 PTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENITLgqpsSRGDTAVRE----ACEAAGADEVVDKLGAGL 552
Cdd:PRK11176 395 IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAY----ARTEQYSREqieeAARMAYAMDFINKMDNGL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 553 DTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADR 632
Cdd:PRK11176 471 DTVIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547
|
250 260 270
....*....|....*....|....*....|..
gi 512154901 633 IVVLDEGAVVQEGTYQELARQPGLFRQLLSYQ 664
Cdd:PRK11176 548 ILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
418-649 |
1.76e-44 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 167.62 E-value: 1.76e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 418 PASPERIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAL 497
Cdd:COG4618 325 PRPKGRLSVENLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREEL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 WQHVALVPQDYARWPLTVRENIT-LGQPSSRgdtAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIAL 576
Cdd:COG4618 405 GRHIGYLPQDVELFDGTIAENIArFGDADPE---KVVAAAKLAGVHEMILRLPDGYDTRIGE---GGARLSGGQRQRIGL 478
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQE 649
Cdd:COG4618 479 ARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALkARGATVVVITHRPSLLAAVDKLLVLRDGRVQAFGPRDE 552
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
441-641 |
3.42e-44 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 158.02 E-value: 3.42e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENIT 520
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 521 LGQPSSRgDTAVREACEAAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRA 600
Cdd:cd03248 110 YGLQSCS-FECVKEAAQKAHAHSFISELASGYDTEVGEK---GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 512154901 601 EYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAV 641
Cdd:cd03248 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
423-665 |
4.13e-44 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 168.77 E-value: 4.13e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWPLTVRENITLGQPSSrGDTAVREACEAAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFR 582
Cdd:TIGR01846 535 VVLQENVLFSRSIRDNIALCNPGA-PFEHVIHAAKLAGAHDFISELPQGYNTEVGEK---GANLSGGQRQRIAIARALVG 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLS 662
Cdd:TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQ 690
|
...
gi 512154901 663 YQV 665
Cdd:TIGR01846 691 QQS 693
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
423-654 |
1.60e-43 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 160.24 E-value: 1.60e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVA 502
Cdd:COG3839 3 SLELENVSKSYGGV--EALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD--RNIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWP-LTVRENITLG-----QPSSRGDTAVREAceaagADEVvdklgaGLDTLLARewlNGEELSGGQWQRIAL 576
Cdd:COG3839 79 MVFQSYALYPhMTVYENIAFPlklrkVPKAEIDRRVREA-----AELL------GLEDLLDR---KPKQLSGGQRQRVAL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDP------RAE-YRIFQRLRdlardRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQ 648
Cdd:COG3839 145 GRALVREPKVFLLDEPLSNLDAklrvemRAEiKRLHRRLG-----TTTIYVTHDQVEAmTLADRIAVMNDGRIQQVGTPE 219
|
....*.
gi 512154901 649 ELARQP 654
Cdd:COG3839 220 ELYDRP 225
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
423-646 |
2.30e-43 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 155.73 E-value: 2.30e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDyarwPL----TVRENI-TLGQPSsrgDTAVREACEAAGADEVVDKLGAGLDTLLArewLNGEELSGGQWQRIALG 577
Cdd:cd03244 82 IIPQD----PVlfsgTIRSNLdPFGEYS---DEELWQALERVGLKEFVESLPGGLDTVVE---EGGENLSVGQRQLLCLA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGT 646
Cdd:cd03244 152 RALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
424-660 |
4.50e-43 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 156.46 E-value: 4.50e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKG---GDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG---TPTGDADPHAL 497
Cdd:TIGR04521 1 IKLKNVSYIYQPGTpfeKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGrdiTAKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 WQHVALVPQdYARWPL---TVRENI-----TLGQPSSRGDTAVREACEAAGADEvvdklgagldTLLAREWLngeELSGG 569
Cdd:TIGR04521 81 RKKVGLVFQ-FPEHQLfeeTVYKDIafgpkNLGLSEEEAEERVKEALELVGLDE----------EYLERSPF---ELSGG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 570 QWQRIALgraffrqAG-------LLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEG 639
Cdd:TIGR04521 147 QMRRVAI-------AGvlamepeVLILDEPTAGLDPKGRKEILDLFKRLHKEKglTVILVTHSMEDVAeYADRVIVMHKG 219
|
250 260
....*....|....*....|.
gi 512154901 640 AVVQEGTYQELARQPGLFRQL 660
Cdd:TIGR04521 220 KIVLDGTPREVFSDVDELEKI 240
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
424-660 |
4.78e-43 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 156.44 E-value: 4.78e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgdADPHALW---QH 500
Cdd:TIGR04520 1 IEVENVSFSYPESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDT--LDEENLWeirKK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDyarwP------LTVRENI-----TLGQPSSRGDTAVREAceaagADEVvdklgaGLDTLLAREWLNgeeLSGG 569
Cdd:TIGR04520 79 VGMVFQN----PdnqfvgATVEDDVafgleNLGVPREEMRKRVDEA-----LKLV------GMEDFRDREPHL---LSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 570 QWQRIALgraffrqAGLL-------VLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVAVADRIVVLDEGA 640
Cdd:TIGR04520 141 QKQRVAI-------AGVLamrpdiiILDEATSMLDPKGRKEVLETIRKLNKEEgiTVISITHDMEEAVLADRVIVMNKGK 213
|
250 260
....*....|....*....|
gi 512154901 641 VVQEGTYQELARQPGLFRQL 660
Cdd:TIGR04520 214 IVAEGTPREIFSQVELLKEI 233
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
425-645 |
5.83e-43 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 152.97 E-value: 5.83e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 425 EIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALV 504
Cdd:cd03214 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 505 PQdyarwpltvrenitlgqpssrgdtavreACEAAGADEvvdklgagldtLLAREWlngEELSGGQWQRIALGRAFFRQA 584
Cdd:cd03214 79 PQ----------------------------ALELLGLAH-----------LADRPF---NELSGGERQRVLLARALAQEP 116
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 585 GLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEG 645
Cdd:cd03214 117 PILLLDEPTSHLDIAHQIELLELLRRLARERgkTVVMVLHDLNLAArYADRVILLKDGRIVAQG 180
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
424-658 |
7.89e-43 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 154.86 E-value: 7.89e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPtgdadPHALWQHVAL 503
Cdd:COG1121 7 IELENLTVSYGGR--PVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKP-----PRRARRRIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYA---RWPLTVRENITLG---------QPSSRGDTAVREACEAAGADEVVDK-LGagldtllarewlngeELSGGQ 570
Cdd:COG1121 80 VPQRAEvdwDFPITVRDVVLMGrygrrglfrRPSRADREAVDEALERVGLEDLADRpIG---------------ELSGGQ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 571 WQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNVA-VADRIVVLDEGaVVQEGTYQ 648
Cdd:COG1121 145 QQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKtILVVTHDLGAVReYFDRVLLLNRG-LVAHGPPE 223
|
250
....*....|
gi 512154901 649 ELARQPGLFR 658
Cdd:COG1121 224 EVLTPENLSR 233
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
424-639 |
1.35e-42 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 151.78 E-value: 1.35e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDaDPHALWQHVAL 503
Cdd:cd03230 1 IEVRNLSKRY--GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEVKRRIGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENItlgqpssrgdtavreaceaagadevvdklgagldtllarewlngeELSGGQWQRIALGRAFFR 582
Cdd:cd03230 78 LPEEPSLYEnLTVRENL---------------------------------------------KLSGGMKQRLALAQALLH 112
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVLDEG 639
Cdd:cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEgKTILLSSHILEEAeRLCDRVAILNNG 171
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
424-650 |
1.76e-42 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 160.95 E-value: 1.76e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAG-KggdALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQH-V 501
Cdd:COG1129 5 LEMRGISKSFGGvK---ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAgI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYARWP-LTVRENITLG-QPSSRGdtAVREACEAAGADEVVDKLGAGLD--TLLarewlngEELSGGQWQRIALG 577
Cdd:COG1129 82 AIIHQELNLVPnLSVAENIFLGrEPRRGG--LIDWRAMRRRARELLARLGLDIDpdTPV-------GDLSVAQQQLVEIA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQEL 650
Cdd:COG1129 153 RALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVaIIYISHRLDEVfEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
424-660 |
3.67e-42 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 161.15 E-value: 3.67e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENITLGQPSSrGDTAVREACEAAGADEVVDKlGAGLDTllareWLN--GEELSGGQWQRIALGRAFF 581
Cdd:PRK11160 419 VSQRVHLFSATLRDNLLLAAPNA-SDEALIEVLQQVGLEKLLED-DKGLNA-----WLGegGRQLSGGEQRRLGIARALL 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 582 RQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQL 660
Cdd:PRK11160 492 HDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQL 570
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
424-655 |
5.05e-42 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 152.70 E-value: 5.05e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALwQHVAL 503
Cdd:COG4555 2 IEVENLSKKY--GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREAR-RQIGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITL---GQPSSRGDTAVReaceaagADEVVDKLgaGLDTLLAREWlngEELSGGQWQRIALGRA 579
Cdd:COG4555 79 LPDERGLYDrLTVRENIRYfaeLYGLFDEELKKR-------IEELIELL--GLEEFLDRRV---GELSTGMKKKVALARA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 580 FFRQAGLLVLDEPTANLDPRAEyRIFQR-LRDLA-RDRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQPG 655
Cdd:COG4555 147 LVHDPKVLLLDEPTNGLDVMAR-RLLREiLRALKkEGKTVLFSSHIMQEVeALCDRVVILHKGKVVAQGSLDELREEIG 224
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
424-641 |
6.97e-42 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 149.67 E-value: 6.97e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENItlgqpssrgdtavreaceaagadevvdklgagldtllarewlngeeLSGGQWQRIALGRAFFRQ 583
Cdd:cd03246 81 LPQDDELFSGSIAENI----------------------------------------------LSGGQRQRLGLARALYGN 114
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNVAVADRIVVLDEGAV 641
Cdd:cd03246 115 PRILVLDEPNSHLDVEGERALNQAIAALkAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
441-676 |
1.65e-41 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 159.99 E-value: 1.65e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENIT 520
Cdd:COG5265 374 LKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAAIGIVPQDTVLFNDTIAYNIA 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 521 LGQPSSrGDTAVREACEAAGADEVVDKLGAGLDTLLarewlnGE---ELSGGQWQRIALGRAFFRQAGLLVLDEPTANLD 597
Cdd:COG5265 454 YGRPDA-SEEEVEAAARAAQIHDFIESLPDGYDTRV------GErglKLSGGEKQRVAIARTLLKNPPILIFDEATSALD 526
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 598 PRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLSYQVTSDADDEKQPG 676
Cdd:COG5265 527 SRTERAIQAALREVARGRTTLVIAHRLSTIVDADEILVLEAGRIVERGTHAELLAQGGLYAQMWARQQEEEEAEEALAA 605
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
418-639 |
4.42e-41 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 150.63 E-value: 4.42e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 418 PASPERIEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH 495
Cdd:COG1116 2 SAAAPALELRGVSKRFPTGGGGvtALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 496 alwqhVALVPQDYARWP-LTVRENITLGQPSSRGDTAVREAceaaGADEVVDKLGagldtLLAREWLNGEELSGGQWQRI 574
Cdd:COG1116 82 -----RGVVFQEPALLPwLTVLDNVALGLELRGVPKAERRE----RARELLELVG-----LAGFEDAYPHQLSGGMRQRV 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 575 ALGRAFFRQAGLLVLDEPTANLDP--RAE-----YRIFQRLRdlardRIVLLVTHRITN-VAVADRIVVLDEG 639
Cdd:COG1116 148 AIARALANDPEVLLMDEPFGALDAltRERlqdelLRLWQETG-----KTVLFVTHDVDEaVFLADRVVVLSAR 215
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
424-644 |
5.26e-41 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 149.04 E-value: 5.26e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAL---- 497
Cdd:COG1136 5 LELRNLTKSYGTGEGEvtALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELarlr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 WQHVALVPQDYARWP-LTVRENITLGQPSSRGDTAVREaceaAGADEVVDKLGagldtLLAREWLNGEELSGGQWQRIAL 576
Cdd:COG1136 85 RRHIGFVFQFFNLLPeLTALENVALPLLLAGVSRKERR----ERARELLERVG-----LGDRLDHRPSQLSGGQQQRVAI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRITNVAVADRIVVLDEGAVVQE 644
Cdd:COG1136 156 ARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRElgTTIVMVTHDPELAARADRVIRLRDGRIVSD 225
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
425-639 |
8.37e-41 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 146.24 E-value: 8.37e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 425 EIEAVCHRYagKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALV 504
Cdd:cd00267 1 EIENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 505 PQdyarwpltvrenitlgqpssrgdtavreaceaagadevvdklgagldtllarewlngeeLSGGQWQRIALGRAFFRQA 584
Cdd:cd00267 79 PQ-----------------------------------------------------------LSGGQRQRVALARALLLNP 99
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 585 GLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNVA-VADRIVVLDEG 639
Cdd:cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEgRTVIIVTHDPELAElAADRVIVLKDG 156
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
403-654 |
1.52e-40 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 155.45 E-value: 1.52e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 403 LDRAGGFRMRRGTCRPASPER---IEIEAVCHRYAGKGGD---ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYL 476
Cdd:COG1123 237 LAAVPRLGAARGRAAPAAAAAeplLEVRNLSKRYPVRGKGgvrAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLR 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 477 PTEGRVLWDGTPTGD---ADPHALWQHVALVPQD-YA----RWplTVRENITLGqPSSRGDTAVREAceAAGADEVVDKL 548
Cdd:COG1123 317 PTSGSILFDGKDLTKlsrRSLRELRRRVQMVFQDpYSslnpRM--TVGDIIAEP-LRLHGLLSRAER--RERVAELLERV 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 549 GagldtlLAREWLN--GEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI--VLLVTHRI 624
Cdd:COG1123 392 G------LPPDLADryPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGltYLFISHDL 465
|
250 260 270
....*....|....*....|....*....|.
gi 512154901 625 TNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:COG1123 466 AVVRyIADRVAVMYDGRIVEDGPTEEVFANP 496
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
424-654 |
2.01e-40 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 147.97 E-value: 2.01e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAG-KggdALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALW---- 498
Cdd:cd03219 1 LEVRGLTKRFGGlV---ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIArlgi 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 ----QHVALVPQdyarwpLTVRENITLGQPSSRGDTAV------REACEAAGADEVVDKLG-AGLDTLLArewlngEELS 567
Cdd:cd03219 78 grtfQIPRLFPE------LTVLENVMVAAQARTGSGLLlararrEEREARERAEELLERVGlADLADRPA------GELS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 568 GGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGItVLLVEHDMDVVmSLADRVTVLDQGRVIAEG 225
|
....*....
gi 512154901 646 TYQELARQP 654
Cdd:cd03219 226 TPDEVRNNP 234
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
424-641 |
3.12e-40 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 146.87 E-value: 3.12e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGG--DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALW--- 498
Cdd:cd03255 1 IELKNLSKTYGGGGEkvQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 -QHVALVPQDYARWP-LTVRENITLGQPSSRGDTAVREACeaagADEVVDKLgaGLDTLLARewlNGEELSGGQWQRIAL 576
Cdd:cd03255 81 rRHIGFVFQSFNLLPdLTALENVELPLLLAGVPKKERRER----AEELLERV--GLGDRLNH---YPSELSGGQQQRVAI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVAVADRIVVLDEGAV 641
Cdd:cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAgtTIVVVTHDPELAEYADRIIELRDGKI 218
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
424-645 |
4.22e-40 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 146.88 E-value: 4.22e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH---ALW 498
Cdd:cd03257 2 LEVKNLSVSFPTGGGSvkALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRlrkIRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 QHVALVPQDyarwP-------LTVRENITLGQPSSRGDTAVREACEAAGADEVvdKLGagldtlLAREWLNG--EELSGG 569
Cdd:cd03257 82 KEIQMVFQD----PmsslnprMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV--GVG------LPEEVLNRypHELSGG 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 570 QWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEG 645
Cdd:cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELglTLLFITHDLGVVAkIADRVAVMYAGKIVEEG 228
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
424-654 |
4.37e-40 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 147.26 E-value: 4.37e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHV 501
Cdd:COG1124 2 LEVRNLSVSYGQGGRRvpVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYA-----RWplTVREnitlgqpssrgdtAVREACEAAGADEVVDKLGAGLDTL-LAREWLN--GEELSGGQWQR 573
Cdd:COG1124 82 QMVFQDPYaslhpRH--TVDR-------------ILAEPLRIHGLPDREERIAELLEQVgLPPSFLDryPHQLSGGQRQR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLDP--RAEyrIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQ 648
Cdd:COG1124 147 VAIARALILEPELLLLDEPTSALDVsvQAE--ILNLLKDLREERglTYLFVSHDLAVVAhLCDRVAVMQNGRIVEELTVA 224
|
....*.
gi 512154901 649 ELARQP 654
Cdd:COG1124 225 DLLAGP 230
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
420-654 |
6.27e-40 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 150.25 E-value: 6.27e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 420 SPERIEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQ 499
Cdd:COG3842 2 AMPALELENVSKRYGDV--TALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEK--R 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 500 HVALVPQDYARWP-LTVRENITLGqPSSRGdtaVREACEAAGADEVVDKLgaGLDTLLARewlNGEELSGGQWQRIALGR 578
Cdd:COG3842 78 NVGMVFQDYALFPhLTVAENVAFG-LRMRG---VPKAEIRARVAELLELV--GLEGLADR---YPHQLSGGQQQRVALAR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 579 AFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR-I-VLLVTHRITN-VAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:COG3842 149 ALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELgItFIYVTHDQEEaLALADRIAVMNDGRIEQVGTPEEIYERP 227
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
423-675 |
1.56e-39 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 153.96 E-value: 1.56e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGgDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:PRK13657 334 AVEFDDVSFSYDNSR-QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWPLTVRENITLGQPSSRgDTAVREACEAAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFR 582
Cdd:PRK13657 413 VVFQDAGLFNRSIEDNIRVGRPDAT-DEEMRAAAERAQAHDFIERKPDGYDTVVGER---GRQLSGGERQRLAIARALLK 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLS 662
Cdd:PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLR 568
|
250
....*....|....
gi 512154901 663 YQ-VTSDADDEKQP 675
Cdd:PRK13657 569 AQgMLQEDERRKQP 582
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
233-650 |
1.60e-39 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 153.27 E-value: 1.60e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 233 LAGAVVLAGVhPVLLPMLVAASLPQAVAQVSAARVRYLANLRSNGDYRLLAML-----RWH-IYTKDAADQIRAGTMAGF 306
Cdd:TIGR01842 148 LGGAVVLVGL-ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMgnltkRWGrFHSKYLSAQSAASDRAGM 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 307 LSGryrqtvarinredraaADKGARMSLAGAACGgLGS--AIVWAAVVGLLATGRISVGHAgtavfaLQTVGQSVRGLVS 384
Cdd:TIGR01842 227 LSN----------------LSKYFRIVLQSLVLG-LGAylAIDGEITPGMMIAGSILVGRA------LAPIDGAIGGWKQ 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 385 IGSRAmrtglymDDWTRFLDRAGGFRMRRGTCRPASPE-RIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSG 463
Cdd:TIGR01842 284 FSGAR-------QAYKRLNELLANYPSRDPAMPLPEPEgHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSG 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 464 KSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENItlgqpSSRGDTA----VREACEAA 539
Cdd:TIGR01842 357 KSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENI-----ARFGENAdpekIIEAAKLA 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 540 GADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVL 618
Cdd:TIGR01842 432 GVHELILRLPDGYDTVIGP---GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALkARGITVV 508
|
410 420 430
....*....|....*....|....*....|..
gi 512154901 619 LVTHRITNVAVADRIVVLDEGAVVQEGTYQEL 650
Cdd:TIGR01842 509 VITHRPSLLGCVDKILVLQDGRIARFGERDEV 540
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
424-639 |
2.98e-39 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 143.80 E-value: 2.98e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGdaLANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:COG4619 1 LELEGLSFRVGGKPI--LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENITLGqPSSRGDTAVREAceaagADEVVDKLGAGLDTLlarEWlNGEELSGGQWQRIALGRAFFRQ 583
Cdd:COG4619 79 VPQEPALWGGTVRDNLPFP-FQLRERKFDRER-----ALELLERLGLPPDIL---DK-PVERLSGGERQRLALIRALLLQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTH------RitnvaVADRIVVLDEG 639
Cdd:COG4619 149 PDVLLLDEPTSALDPENTRRVEELLREYLAEegRAVLWVSHdpeqieR-----VADRVLTLEAG 207
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
424-644 |
9.43e-39 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 142.61 E-value: 9.43e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGG--DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPhalwqHV 501
Cdd:cd03293 1 LEVRNVSKTYGGGGGavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGP-----DR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYARWP-LTVRENITLG---QPSSRGDTAVReaceaagADEVVDKLGagldtLLAREWLNGEELSGGQWQRIALG 577
Cdd:cd03293 76 GYVFQQDALLPwLTVLDNVALGlelQGVPKAEARER-------AEELLELVG-----LSGFENAYPHQLSGGMRQRVALA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI--VLLVTHRITN-VAVADRIVVLDE--GAVVQE 644
Cdd:cd03293 144 RALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGktVLLVTHDIDEaVFLADRVVVLSArpGRIVAE 215
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
424-650 |
3.04e-38 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 141.55 E-value: 3.04e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLY-----LPTEGRVLWDGTP--TGDADPHA 496
Cdd:cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDiyDLDVDVLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 497 LWQHVALVPQDYARWPLTVRENITLGqPSSRG-------DTAVREACEAAG-ADEVVDKLGAGldtllarewlngeELSG 568
Cdd:cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYG-LRLHGiklkeelDERVEEALRKAAlWDEVKDRLHAL-------------GLSG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 569 GQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTY 647
Cdd:cd03260 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAArVADRTAFLLNGRLVEFGPT 224
|
...
gi 512154901 648 QEL 650
Cdd:cd03260 225 EQI 227
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
424-654 |
4.13e-38 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 148.51 E-value: 4.13e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPT---EGRVLWDGTPTGDADPHALWQH 500
Cdd:COG1123 5 LEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRGRR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDYARW--PLTVRENITLGQPSSRGDTAVREACEAAGADEVvdklgaGLDTLLARewlNGEELSGGQWQRIALGR 578
Cdd:COG1123 85 IGMVFQDPMTQlnPVTVGDQIAEALENLGLSRAEARARVLELLEAV------GLERRLDR---YPHQLSGGQRQRVAIAM 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 579 AFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:COG1123 156 ALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERgtTVLLITHDLGVVAeIADRVVVMDDGRIVEDGPPEEILAAP 234
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
441-594 |
5.39e-38 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 138.16 E-value: 5.39e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWP-LTVRENI 519
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPrLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 520 TLGQPSSRGDTAVREaceaAGADEVVDKLGAG--LDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTA 594
Cdd:pfam00005 81 RLGLLLKGLSKREKD----ARAEEALEKLGLGdlADRPVGE---RPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
424-642 |
6.97e-38 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 138.33 E-value: 6.97e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGkgGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQH-VA 502
Cdd:cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAgIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQdyarwpltvrenitlgqpssrgdtavreaceaagadevvdklgagldtllarewlngeeLSGGQWQRIALGRAFFR 582
Cdd:cd03216 79 MVYQ-----------------------------------------------------------LSVGERQMVEIARALAR 99
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAVV 642
Cdd:cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVaVIFISHRLDEVfEIADRVTVLRDGRVV 161
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
419-652 |
1.51e-37 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 146.71 E-value: 1.51e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 419 ASPERIEIEAVCHRYagkgGDALAN--VSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHA 496
Cdd:COG3845 1 MMPPALELRGITKRF----GGVVANddVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 497 --------LWQHVALVPqdyarwPLTVRENITLGQPSSRGdTAVREACEAAGADEVVDKLGAGLDtLLAREWlngeELSG 568
Cdd:COG3845 77 aialgigmVHQHFMLVP------NLTVAENIVLGLEPTKG-GRLDRKAARARIRELSERYGLDVD-PDAKVE----DLSV 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 569 GQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVLDEGAVVQEG- 645
Cdd:COG3845 145 GEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEgKSIIFITHKLREVmAIADRVTVLRRGKVVGTVd 224
|
250
....*....|.
gi 512154901 646 ----TYQELAR 652
Cdd:COG3845 225 taetSEEELAE 235
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
424-661 |
1.54e-37 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 139.89 E-value: 1.54e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagkgGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVAL 503
Cdd:COG3840 2 LRLDDLTYRY----GDFPLRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE--RPVSM 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITLG-QPSSRGDTAVREACEAAgADEVvdklgaGLDTLLAREwlnGEELSGGQWQRIALGRAFF 581
Cdd:COG3840 76 LFQENNLFPhLTVAQNIGLGlRPGLKLTAEQRAQVEQA-LERV------GLAGLLDRL---PGQLSGGQRQRVALARCLV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 582 RQAGLLVLDEPTANLDP--RAEyrIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQEL--ARQP 654
Cdd:COG3840 146 RKRPILLLDEPFSALDPalRQE--MLDLVDELCRERglTVLMVTHDPEDAArIADRVLLVADGRIAADGPTAALldGEPP 223
|
....*..
gi 512154901 655 GLFRQLL 661
Cdd:COG3840 224 PALAAYL 230
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
424-645 |
3.10e-37 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 138.09 E-value: 3.10e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagKGGDALANVSLTLRRGeVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDaDPHALWQHVAL 503
Cdd:cd03264 1 LQLENLTKRY--GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK-QPQKLRRRIGY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQD---YARWplTVRE-----NITLGQPSSRGDTAVREACEAAG-ADEVVDKLGAgldtllarewlngeeLSGGQWQRI 574
Cdd:cd03264 77 LPQEfgvYPNF--TVREfldyiAWLKGIPSKEVKARVDEVLELVNlGDRAKKKIGS---------------LSGGMRRRV 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 575 ALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVeSLCNQVAVLNKGKLVFEG 211
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
417-668 |
6.98e-37 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 146.02 E-value: 6.98e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 417 RPASPERIEIEAVCHRYaGKGGDALANVSLTL-RRGEVtALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH 495
Cdd:PRK10790 334 RPLQSGRIDIDNVSFAY-RDDNLVLQNINLSVpSRGFV-ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 496 ALWQHVALVPQDYARWPLTVRENITLGQPSSrgDTAVREACEAAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQRIA 575
Cdd:PRK10790 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDIS--EEQVWQALETVQLAELARSLPDGLYTPLGEQ---GNNLSVGQKQLLA 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 576 LGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRdLARDRIVLLV-THRITNVAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVViAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
|
250
....*....|....
gi 512154901 655 GLFRQLLSYQVTSD 668
Cdd:PRK10790 566 GRYWQMYQLQLAGE 579
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
424-639 |
9.32e-37 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 135.78 E-value: 9.32e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP--TGDADPHALWQHV 501
Cdd:cd03229 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDltDLEDELPPLRRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYARWP-LTVRENITLGqpssrgdtavreaceaagadevvdklgagldtllarewlngeeLSGGQWQRIALGRAF 580
Cdd:cd03229 79 GMVFQDFALFPhLTVLENIALG-------------------------------------------LSGGQQQRVALARAL 115
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRI-VLLVTHRITNVA-VADRIVVLDEG 639
Cdd:cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLqAQLGItVVLVTHDLDEAArLADRVVVLRDG 177
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
424-654 |
1.86e-36 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 137.05 E-value: 1.86e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagkgGD--ALANVSLTLRRGEVTALVGYNGSGKSTLskLAC--GLYLPTEGRVLWDGTPTGD--ADPHAL 497
Cdd:COG1126 2 IEIENLHKSF----GDleVLKGISLDVEKGEVVVIIGPSGSGKSTL--LRCinLLEEPDSGTITVDGEDLTDskKDINKL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 WQHVALVPQDYARWP-LTVRENITLGQPSSRGDTavREACEAAgADEVVDKLGagldtLLAREWLNGEELSGGQWQRIAL 576
Cdd:COG1126 76 RRKVGMVFQQFNLFPhLTVLENVTLAPIKVKKMS--KAEAEER-AMELLERVG-----LADKADAYPAQLSGGQQQRVAI 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPR--AEyrIFQRLRDLARDRI-VLLVTH-----RitnvAVADRIVVLDEGAVVQEGTYQ 648
Cdd:COG1126 148 ARALAMEPKVMLFDEPTSALDPElvGE--VLDVMRDLAKEGMtMVVVTHemgfaR----EVADRVVFMDGGRIVEEGPPE 221
|
....*.
gi 512154901 649 ELARQP 654
Cdd:COG1126 222 EFFENP 227
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
425-661 |
1.92e-36 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 136.65 E-value: 1.92e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 425 EIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQH-VAL 503
Cdd:COG0410 5 EVENLHAGYGGI--HVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLgIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQD---YARwpLTVRENITLGQPSSRGDTAVREACEAAgadevvdklgagLDT---LLAREWLNGEELSGGQWQRIALG 577
Cdd:COG0410 83 VPEGrriFPS--LTVEENLLLGAYARRDRAEVRADLERV------------YELfprLKERRRQRAGTLSGGEQQMLAIG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQPG 655
Cdd:COG0410 149 RALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVtILLVEQNARFAlEIADRAYVLERGRIVLEGTAAELLADPE 228
|
....*.
gi 512154901 656 LFRQLL 661
Cdd:COG0410 229 VREAYL 234
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
424-654 |
3.39e-36 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 139.51 E-value: 3.39e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTG-DADPHALwqHVA 502
Cdd:COG1118 3 IEVRNISKRFGSF--TLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFtNLPPRER--RVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWP-LTVRENITLG---QPSSRGDTAVReaceaagADEVVDKLGAgldtllarEWLNGE---ELSGGQWQRIA 575
Cdd:COG1118 79 FVFQHYALFPhMTVAENIAFGlrvRPPSKAEIRAR-------VEELLELVQL--------EGLADRypsQLSGGQRQRVA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 576 LGRAFFRQAGLLVLDEPTANLDP--RAEYRifQRLRDLARD--RIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQEL 650
Cdd:COG1118 144 LARALAVEPEVLLLDEPFGALDAkvRKELR--RWLRRLHDElgGTTVFVTHDQEEAlELADRVVVMNQGRIEQVGTPDEV 221
|
....
gi 512154901 651 ARQP 654
Cdd:COG1118 222 YDRP 225
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
434-651 |
6.09e-36 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 134.87 E-value: 6.09e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 434 AGKGG-DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQH-VALVPQDYARW 511
Cdd:cd03224 8 AGYGKsQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAgIGYVPEGRRIF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 512 P-LTVRENITLGQpssrgdTAVREACEAAGADEVVD---KLGAGLDTLlarewlnGEELSGGQWQRIALGRAFFRQAGLL 587
Cdd:cd03224 88 PeLTVEENLLLGA------YARRRAKRKARLERVYElfpRLKERRKQL-------AGTLSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 588 VLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELA 651
Cdd:cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVtILLVEQNARFAlEIADRAYVLERGRVVLEGTAAELL 220
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
425-642 |
1.19e-35 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 133.54 E-value: 1.19e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 425 EIEAVCHRYaGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADphaLWQHVALV 504
Cdd:cd03226 1 RIENISFSY-KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE---RRKSIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 505 PQD--YARWPLTVRENITLGQPssrgdtavreacEAAGADEVVDKLgagLDTLlareWLNGEE------LSGGQWQRIAL 576
Cdd:cd03226 77 MQDvdYQLFTDSVREELLLGLK------------ELDAGNEQAETV---LKDL----DLYALKerhplsLSGGQKQRLAI 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLA-RDRIVLLVTHRITNVA-VADRIVVLDEGAVV 642
Cdd:cd03226 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAaQGKAVIVITHDYEFLAkVCDRVLLLANGAIV 205
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
424-650 |
1.25e-35 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 133.78 E-value: 1.25e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgDADPHALWQHVAL 503
Cdd:cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI-RTDRKAARQSLGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITLgqpSSRgdtaVReACEAAGADEVVDKLgagLDTLLAREWLNGE--ELSGGQWQRIALGRAF 580
Cdd:cd03263 80 CPQFDALFDeLTVREHLRF---YAR----LK-GLPKSEIKEEVELL---LRVLGLTDKANKRarTLSGGMKRKLSLAIAL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQEL 650
Cdd:cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAeALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
424-650 |
1.59e-35 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 134.41 E-value: 1.59e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAL------ 497
Cdd:COG3638 3 LELRNLSKRYPG-GTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALrrlrrr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 ----WQHVALVPQdyarwpLTVRENI---TLGQPSS-RGDTAVREACEAAGADEVVDKLGagldtLLAREWLNGEELSGG 569
Cdd:COG3638 82 igmiFQQFNLVPR------LSVLTNVlagRLGRTSTwRSLLGLFPPEDRERALEALERVG-----LADKAYQRADQLSGG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 570 QWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRItNVAV--ADRIVVLDEGAVVQEG 645
Cdd:COG3638 151 QQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDgiTVVVNLHQV-DLARryADRIIGLRDGRVVFDG 229
|
....*
gi 512154901 646 TYQEL 650
Cdd:COG3638 230 PPAEL 234
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
424-645 |
1.68e-35 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 133.64 E-value: 1.68e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYaGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHA---LWQH 500
Cdd:COG2884 2 IRFENVSKRY-PGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREipyLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDYARWP-LTVRENITL-----GQPSSRGDTAVReaceaagadEVVDKLGagldtLLAREWLNGEELSGGQWQRI 574
Cdd:COG2884 81 IGVVFQDFRLLPdRTVYENVALplrvtGKSRKEIRRRVR---------EVLDLVG-----LSDKAKALPHELSGGEQQRV 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 575 ALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:COG2884 147 AIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGTtVLIATHDLELVdRMPKRVLELEDGRLVRDE 219
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
424-654 |
1.98e-35 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 133.97 E-value: 1.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYaGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:cd03295 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITL-----GQPSSRGDTAVREACEAAGADEvvdklgaglDTLLAREwlnGEELSGGQWQRIALG 577
Cdd:cd03295 80 VIQQIGLFPhMTVEENIALvpkllKWPKEKIRERADELLALVGLDP---------AEFADRY---PHELSGGQQQRVGVA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRITN-VAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQElgKTIVFVTHDIDEaFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
424-655 |
2.27e-35 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 133.48 E-value: 2.27e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAL---W 498
Cdd:cd03258 2 IELKNVSKVFGDTGGKvtALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELrkaR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 QHVALVPQDYAR-WPLTVRENITL-----GQPSSRGDTAVREACEAAGADEVVDKLGAgldtllarewlngeELSGGQWQ 572
Cdd:cd03258 82 RRIGMIFQHFNLlSSRTVFENVALpleiaGVPKAEIEERVLELLELVGLEDKADAYPA--------------QLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 573 RIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQE 649
Cdd:cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELglTIVLITHEMEVVkRICDRVAVMEKGEVVEEGTVEE 227
|
....*.
gi 512154901 650 LARQPG 655
Cdd:cd03258 228 VFANPQ 233
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
424-652 |
2.30e-35 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 133.95 E-value: 2.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH---ALWQH 500
Cdd:COG1127 6 IEVRNLTKSFGDR--VVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKelyELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDYARW-PLTVRENITL------GQPSSRGDTAVREACEAAGADEVVDKLGAgldtllarewlngeELSGGQWQR 573
Cdd:COG1127 84 IGMLFQGGALFdSLTVFENVAFplrehtDLSEAEIRELVLEKLELVGLPGAADKMPS--------------ELSGGMRKR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLaRDRI---VLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQE 649
Cdd:COG1127 150 VALARALALDPEILLYDEPTAGLDPITSAVIDELIREL-RDELgltSVVVTHDLDSAfAIADRVAVLADGKIIAEGTPEE 228
|
...
gi 512154901 650 LAR 652
Cdd:COG1127 229 LLA 231
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
424-645 |
2.97e-35 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 132.76 E-value: 2.97e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVAL 503
Cdd:cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD--RDIAM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITLG-----QPSSRGDTAVREACEAAGADEVVDKLGAgldtllarewlngeELSGGQWQRIALG 577
Cdd:cd03301 77 VFQNYALYPhMTVYDNIAFGlklrkVPKDEIDERVREVAELLQIEHLLDRKPK--------------QLSGGQRQRVALG 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR--DRIVLLVTH-RITNVAVADRIVVLDEGAVVQEG 645
Cdd:cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQrlGTTTIYVTHdQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
424-666 |
7.49e-35 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 132.97 E-value: 7.49e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:PRK13548 3 LEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYA-RWPLTVRENITLG-QPSSRGDTAVREACEAAGADevvdklgAGLDTLLAREWLngeELSGGQWQRIALGRAF- 580
Cdd:PRK13548 81 LPQHSSlSFPFTVEEVVAMGrAPHGLSRAEDDALVAAALAQ-------VDLAHLAGRDYP---QLSGGEQQRVQLARVLa 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 581 -----FRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRItNVAV--ADRIVVLDEGAVVQEGTYQElA 651
Cdd:PRK13548 151 qlwepDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERglAVIVVLHDL-NLAAryADRIVLLHQGRLVADGTPAE-V 228
|
250
....*....|....*
gi 512154901 652 RQPGLFRQLLSYQVT 666
Cdd:PRK13548 229 LTPETLRRVYGADVL 243
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
424-650 |
1.37e-34 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 131.47 E-value: 1.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQ---H 500
Cdd:cd03261 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRlrrR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDYARW-PLTVRENITL------GQPSSRGDTAVREACEAAGADEVVDKLGAgldtllarewlngeELSGGQWQR 573
Cdd:cd03261 79 MGMLFQSGALFdSLTVFENVAFplrehtRLSEEEIREIVLEKLEAVGLRGAEDLYPA--------------ELSGGMKKR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR--DRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQEL 650
Cdd:cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKelGLTSIMVTHDLDTAfAIADRIAVLYDGKIVAEGTPEEL 224
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
424-645 |
1.63e-34 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 129.36 E-value: 1.63e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADpHALWQHVAL 503
Cdd:cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-KALSSLISV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENItlgqpssrgdtavreaceaagadevvdklgagldtllarewlnGEELSGGQWQRIALGRAFFRQ 583
Cdd:cd03247 80 LNQRPYLFDTTLRNNL-------------------------------------------GRRFSGGERQRLALARILLQD 116
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEG 645
Cdd:cd03247 117 APIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
425-637 |
4.02e-34 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 129.58 E-value: 4.02e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 425 EIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPtgdadPHALWQHVALV 504
Cdd:cd03235 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKP-----LEKERKRIGYV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 505 PQ-DYARW--PLTVRENITLG---------QPSSRGDTAVREACEAAGADEVVDK-LGagldtllarewlngeELSGGQW 571
Cdd:cd03235 74 PQrRSIDRdfPISVRDVVLMGlyghkglfrRLSKADKAKVDEALERVGLSELADRqIG---------------ELSGGQQ 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 572 QRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVLD 637
Cdd:cd03235 139 QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREgMTILVVTHDLGLVlEYFDRVLLLN 206
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
424-650 |
8.86e-34 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 129.22 E-value: 8.86e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQ---H 500
Cdd:cd03256 1 IEVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQlrrQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDYARWP-LTVRENITLGQPSSR----------GDTAVREACEAagadevVDKLGagldtLLAREWLNGEELSGG 569
Cdd:cd03256 80 IGMIFQQFNLIErLSVLENVLSGRLGRRstwrslfglfPKEEKQRALAA------LERVG-----LLDKAYQRADQLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 570 QWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRItNVAV--ADRIVVLDEGAVVQEG 645
Cdd:cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEgiTVIVSLHQV-DLAReyADRIVGLKDGRIVFDG 227
|
....*
gi 512154901 646 TYQEL 650
Cdd:cd03256 228 PPAEL 232
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
424-652 |
1.35e-33 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 129.05 E-value: 1.35e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:COG4604 2 IEIKNVSKRYGGK--VVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRLAI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDY---ARwpLTVRENITLGQ-PSSRG------DTAVREACEAAGADEVVDKLgagLDtllarewlngeELSGGQWQR 573
Cdd:COG4604 80 LRQENhinSR--LTVRELVAFGRfPYSKGrltaedREIIDEAIAYLDLEDLADRY---LD-----------ELSGGQRQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 574 --IALgrAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRItNVAV--ADRIVVLDEGAVVQEGTY 647
Cdd:COG4604 144 afIAM--VLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADElgKTVVIVLHDI-NFAScyADHIVAMKDGRVVAQGTP 220
|
....*
gi 512154901 648 QELAR 652
Cdd:COG4604 221 EEIIT 225
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
423-637 |
1.51e-33 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 127.60 E-value: 1.51e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYagkGGDAL-ANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDaDPHALWQHV 501
Cdd:COG4133 2 MLEAENLSCRR---GERLLfSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRD-AREDYRRRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYARWP-LTVRENITLGQpSSRGDTAVREACEAAgadevVDKLGagldtLLAREWLNGEELSGGQWQRIALGRAF 580
Cdd:COG4133 78 AYLGHADGLKPeLTVRENLRFWA-ALYGLRADREAIDEA-----LEAVG-----LAGLADLPVRQLSAGQKRRVALARLL 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRD-LARDRIVLLVTHRITNVAVADRIVVLD 637
Cdd:COG4133 147 LSPAPLWLLDEPFTALDAAGVALLAELIAAhLARGGAVLLTTHQPLELAAARVLDLGD 204
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
424-655 |
9.16e-33 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 126.30 E-value: 9.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagkgGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHV 501
Cdd:cd03296 3 IEVRNVSKRF----GDfvALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE--RNV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYARWP-LTVRENITLGqpssrgdTAVREACEAAGADEVVDKLGAGLDtLLAREWLNG---EELSGGQWQRIALG 577
Cdd:cd03296 77 GFVFQHYALFRhMTVFDNVAFG-------LRVKPRSERPPEAEIRAKVHELLK-LVQLDWLADrypAQLSGGQRQRVALA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 578 RAFFRQAGLLVLDEPTANLDP--RAEYRIFqrLRDLaRDRI---VLLVTH-RITNVAVADRIVVLDEGAVVQEGTYQELA 651
Cdd:cd03296 149 RALAVEPKVLLLDEPFGALDAkvRKELRRW--LRRL-HDELhvtTVFVTHdQEEALEVADRVVVMNKGRIEQVGTPDEVY 225
|
....
gi 512154901 652 RQPG 655
Cdd:cd03296 226 DHPA 229
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
424-654 |
9.68e-33 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 126.20 E-value: 9.68e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVAL 503
Cdd:cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK--RPVNT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITLGQPSSRGDTAVREAcEAAGADEVVdklgaGLDTLLARewlNGEELSGGQWQRIALGRAFFR 582
Cdd:cd03300 77 VFQNYALFPhLTVFENIAFGLRLKKLPKAEIKE-RVAEALDLV-----QLEGYANR---KPSQLSGGQQQRVAIARALVN 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTH-RITNVAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:cd03300 148 EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELgiTFVFVTHdQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
424-641 |
1.23e-31 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 122.25 E-value: 1.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLskLAC--GLYLPTEGRVLWDGTPTGDADP--HALWQ 499
Cdd:cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTL--LRCinLLEEPDSGTIIIDGLKLTDDKKniNELRQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 500 HVALVPQDYARWP-LTVRENITLGQPSSRG---DTAVREACEAagadevVDKLGagldtLLAREWLNGEELSGGQWQRIA 575
Cdd:cd03262 77 KVGMVFQQFNLFPhLTVLENITLAPIKVKGmskAEAEERALEL------LEKVG-----LADKADAYPAQLSGGQQQRVA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 576 LGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAV 641
Cdd:cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMtMVVVTHEMGFArEVADRVIFMDDGRI 213
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
424-654 |
1.59e-31 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 122.83 E-value: 1.59e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVAL 503
Cdd:cd03299 1 LKVENLSKDW---KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK--RDISY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITLGQPSSRGDTAVREAceaaGADEVVDKLGagLDTLLARewlNGEELSGGQWQRIALGRAFFR 582
Cdd:cd03299 76 VPQNYALFPhMTVYKNIAYGLKKRKVDKKEIER----KVLEIAEMLG--IDHLLNR---KPETLSGGEQQRVAIARALVV 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLAR--DRIVLLVTHRITNVAV-ADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKefGVTVLHVTHDFEEAWAlADKVAIMLNGKLIQVGKPEEVFKKP 221
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
424-653 |
4.20e-31 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 122.82 E-value: 4.20e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgdaDPHALWQ---H 500
Cdd:PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVL---SEETVWDvrrQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDyarwP------LTVRENITLGqpssrgdtavreaCEAAGA--DEVVDKLGAGLDTLLAREWLNGE--ELSGGQ 570
Cdd:PRK13635 83 VGMVFQN----PdnqfvgATVQDDVAFG-------------LENIGVprEEMVERVDQALRQVGMEDFLNREphRLSGGQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 571 WQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQ 648
Cdd:PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKgiTVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225
|
....*
gi 512154901 649 ELARQ 653
Cdd:PRK13635 226 EIFKS 230
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
424-678 |
6.94e-31 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 127.91 E-value: 6.94e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVChrYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:PRK10789 316 VNIRQFT--YPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAV 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENITLGQPSSRGDTAVREACEAAGADEVVdKLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQ 583
Cdd:PRK10789 394 VSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDIL-RLPQGYDTEVGER---GVMLSGGQKQRISIARALLLN 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLSY 663
Cdd:PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRY 549
|
250
....*....|....*.
gi 512154901 664 QVTSDA-DDEKQPGPG 678
Cdd:PRK10789 550 QQLEAAlDDAPEIREE 565
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
424-639 |
7.55e-31 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 119.88 E-value: 7.55e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDA---LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTptgdadphalwqh 500
Cdd:cd03250 1 ISVEDASFTWDSGEQETsftLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQdyARW--PLTVRENITLGQP--SSRGDTAVReACeAAGADevVDKLGAGLDTLLArEwlNGEELSGGQWQRIAL 576
Cdd:cd03250 68 IAYVSQ--EPWiqNGTIRENILFGKPfdEERYEKVIK-AC-ALEPD--LEILPDGDLTEIG-E--KGINLSGGQKQRISL 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEYRIFQR--LRDLARDRIVLLVTHRITNVAVADRIVVLDEG 639
Cdd:cd03250 139 ARAVYSDADIYLLDDPLSAVDAHVGRHIFENciLGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
424-654 |
9.39e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 122.05 E-value: 9.39e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKG---GDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEG------RVLWDGTPTGDADP 494
Cdd:PRK13634 3 ITFQKVEHRYQYKTpfeRRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGtvtigeRVITAGKKNKKLKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 495 haLWQHVALVPQ--DYARWPLTVRENITLGqPSSRGdtaVREACEAAGADEVVDKLGAGLDtLLAREWLngeELSGGQWQ 572
Cdd:PRK13634 83 --LRKKVGIVFQfpEHQLFEETVEKDICFG-PMNFG---VSEEDAKQKAREMIELVGLPEE-LLARSPF---ELSGGQMR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 573 RIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQE 649
Cdd:PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKglTTVLVTHSMEDAArYADQIVVMHKGTVFLQGTPRE 232
|
....*
gi 512154901 650 LARQP 654
Cdd:PRK13634 233 IFADP 237
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
225-623 |
1.06e-30 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 126.71 E-value: 1.06e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 225 LIASAASFLAGAVVLAGVHPVLLPMLVAASL--PQAVAQVSAARVRYLANLRSNGDYRLLAMLRwhiytkDAADQIRAGT 302
Cdd:TIGR02868 138 LVVGAAAVAAIAVLSVPAALILAAGLLLAGFvaPLVSLRAARAAEQALARLRGELAAQLTDALD------GAAELVASGA 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 303 MAGFLSGryrqtVARINREDRAAADKGARMSLAGAAcggLGSAIVWAAVVGLLATGRISV---GHAGT------------ 367
Cdd:TIGR02868 212 LPAALAQ-----VEEADRELTRAERRAAAATALGAA---LTLLAAGLAVLGALWAGGPAVadgRLAPVtlavlvllplaa 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 368 --AVFALQTVGQSVRGLVSIGSR---AMRTGLYMDDWTRFLDRAGgfrmrrgtcrPASPERIEIEAVCHRYAGkGGDALA 442
Cdd:TIGR02868 284 feAFAALPAAAQQLTRVRAAAERiveVLDAAGPVAEGSAPAAGAV----------GLGKPTLELRDLSAGYPG-APPVLD 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENITLG 522
Cdd:TIGR02868 353 GVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLA 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 523 QPSSRGDtAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEY 602
Cdd:TIGR02868 433 RPDATDE-ELWAALERVGLADWLRALPDGLDTVLGE---GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETAD 508
|
410 420
....*....|....*....|.
gi 512154901 603 RIFQRLRDLARDRIVLLVTHR 623
Cdd:TIGR02868 509 ELLEDLLAALSGRTVVLITHH 529
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
424-650 |
4.10e-30 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 118.94 E-value: 4.10e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYaGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQ---H 500
Cdd:TIGR02315 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKlrrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDYARWP-LTVRENITLG----QPSSRGDTAVREACEAAGADEVVDKLGagldtLLAREWLNGEELSGGQWQRIA 575
Cdd:TIGR02315 81 IGMIFQHYNLIErLTVLENVLHGrlgyKPTWRSLLGRFSEEDKERALSALERVG-----LADKAYQRADQLSGGQQQRVA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 576 LGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR-DRIVLLVThrITNVAVA----DRIVVLDEGAVVQEGTYQEL 650
Cdd:TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKeDGITVIIN--LHQVDLAkkyaDRIVGLKAGEIVFDGAPSEL 233
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
424-650 |
4.52e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 119.71 E-value: 4.52e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:PRK13632 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDyarwP------LTVRENITLGQPSSRGDtavREACEAAgADEVVDKlgAGLDTLLAREWLNgeeLSGGQWQRIALG 577
Cdd:PRK13632 88 IFQN----PdnqfigATVEDDIAFGLENKKVP---PKKMKDI-IDDLAKK--VGMEDYLDKEPQN---LSGGQKQRVAIA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLA--RDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRktRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
424-672 |
4.83e-30 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 120.21 E-value: 4.83e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHalwqHVAL 503
Cdd:COG4152 2 LELKGLTKRFGDK--TAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRR----RIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQD---YARWplTVRENIT-LGQpsSRGDTAvREACEAagADEVVDKLGAGldtllarEWLN--GEELSGGQWQRIALG 577
Cdd:COG4152 76 LPEErglYPKM--KVGEQLVyLAR--LKGLSK-AEAKRR--ADEWLERLGLG-------DRANkkVEELSKGNQQKVQLI 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR-DRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQPG 655
Cdd:COG4152 142 AALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAkGTTVIFSSHQMELVeELCDRIVIINKGRKVLSGSVDEIRRQFG 221
|
250
....*....|....*..
gi 512154901 656 LFRqllsYQVTSDADDE 672
Cdd:COG4152 222 RNT----LRLEADGDAG 234
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
424-654 |
7.86e-30 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 118.17 E-value: 7.86e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLY-----LPTEGRVLWDGTPTGDA--DPHA 496
Cdd:TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNdlvpgVRIEGKVLFDGQDIYDKkiDVVE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 497 LWQHVALVPQDYARWPLTVRENITLG------QPSSRGDTAVREACEAAGA-DEVVDKLGAgldtllarewlNGEELSGG 569
Cdd:TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGprlhgiKDKKELDEIVEESLKKAALwDEVKDRLHD-----------SALGLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 570 QWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQ 648
Cdd:TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAArISDRTAFFYDGELVEYGPTE 228
|
....*.
gi 512154901 649 ELARQP 654
Cdd:TIGR00972 229 QIFTNP 234
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
424-653 |
1.13e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 119.04 E-value: 1.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYA----GKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADphALW- 498
Cdd:PRK13633 5 IKCKNVSYKYEsneeSTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE--NLWd 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 --------------QHVA-LVPQDYARWPltvrENitLGQPSSRGDTAVREACEAAGADEvVDKLGAGLdtllarewlng 563
Cdd:PRK13633 83 irnkagmvfqnpdnQIVAtIVEEDVAFGP----EN--LGIPPEEIRERVDESLKKVGMYE-YRRHAPHL----------- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 564 eeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVAVADRIVVLDEGAV 641
Cdd:PRK13633 145 --LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYgiTIILITHYMEEAVEADRIIVMDSGKV 222
|
250
....*....|..
gi 512154901 642 VQEGTYQELARQ 653
Cdd:PRK13633 223 VMEGTPKEIFKE 234
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
424-662 |
1.29e-29 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 120.18 E-value: 1.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALW--- 498
Cdd:COG1135 2 IELENLSKTFPTKGGPvtALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRaar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 QHVALVPQDY----ARwplTVRENITL-----GQPssRGDTAVReaceaagADEVVDKLGagldtLLAREWLNGEELSGG 569
Cdd:COG1135 82 RKIGMIFQHFnllsSR---TVAENVALpleiaGVP--KAEIRKR-------VAELLELVG-----LSDKADAYPSQLSGG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 570 QWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLaRDRI---VLLVTHRItNV--AVADRIVVLDEGAVVQE 644
Cdd:COG1135 145 QKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDI-NRELgltIVLITHEM-DVvrRICDRVAVLENGRIVEQ 222
|
250 260
....*....|....*....|
gi 512154901 645 GTYQELARQPG--LFRQLLS 662
Cdd:COG1135 223 GPVLDVFANPQseLTRRFLP 242
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
445-645 |
1.43e-29 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 116.44 E-value: 1.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 445 SLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVALVPQDYARWP-LTVRENITLG- 522
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD--RPVSMLFQENNLFAhLTVEQNVGLGl 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 523 QPSSRGDTAVREACEAAGADevvdklgAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEY 602
Cdd:cd03298 96 SPGLKLTAEDRQAIEVALAR-------VGLAGLEKRL---PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 512154901 603 RIFQRLRDLARDR--IVLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:cd03298 166 EMLDLVLDLHAETkmTVLMVTHQPEDAkRLAQRVVFLDNGRIAAQG 211
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
443-660 |
1.53e-29 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 120.59 E-value: 1.53e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDAD------PHAlwQHVALVPQDYARWP-LTV 515
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSArgiflpPHR--RRIGYVFQEARLFPhLSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENITLGQpsSRGDTAVReaceAAGADEVVDKLGagLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTAN 595
Cdd:COG4148 95 RGNLLYGR--KRAPRAER----RISFDEVVELLG--IGHLLDR---RPATLSGGERQRVAIGRALLSSPRLLLMDEPLAA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 596 LDPRAEYRIFQRLRDLARD-RI-VLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQPGLFRQL 660
Cdd:COG4148 164 LDLARKAEILPYLERLRDElDIpILYVSHSLDEVArLADHVVLLEQGRVVASGPLAEVLSRPDLLPLA 231
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
424-645 |
2.67e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 115.46 E-value: 2.67e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHalwqHVAL 503
Cdd:cd03269 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARN----RIGY 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVREN-ITLGQpsSRGDTAvREAceAAGADEVVDKLGAGldtllarEWLNG--EELSGGQWQRIALGRA 579
Cdd:cd03269 75 LPEERGLYPkMKVIDQlVYLAQ--LKGLKK-EEA--RRRIDEWLERLELS-------EYANKrvEELSKGNQQKVQFIAA 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 580 FFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAgKTVILSTHQMELVeELCDRVLLLNKGRAVLYG 210
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
429-645 |
2.74e-29 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 115.86 E-value: 2.74e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 429 VCHRYAGKGGDALANVSLTLRrGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDAD------PHAlwQHVA 502
Cdd:cd03297 2 LCVDIEKRLPDFTLKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRkkinlpPQQ--RKIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWP-LTVRENITLGQPSSRgdTAVREACEaagaDEVVDKLGagLDTLLAREWLngeELSGGQWQRIALGRAFF 581
Cdd:cd03297 79 LVFQQYALFPhLNVRENLAFGLKRKR--NREDRISV----DELLDLLG--LDHLLNRYPA---QLSGGEKQRVALARALA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 582 RQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNlnIPVIFVTHDLSEAeYLADRIVVMEDGRLQYIG 214
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
424-639 |
3.64e-29 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 115.42 E-value: 3.64e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHA---LWQH 500
Cdd:TIGR02673 2 IEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQlplLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDYARWP-LTVRENITL-----GQPSSRGDTAVREACEAAGadevvdklgagldtLLAREWLNGEELSGGQWQRI 574
Cdd:TIGR02673 81 IGVVFQDFRLLPdRTVYENVALplevrGKKEREIQRRVGAALRQVG--------------LEHKADAFPEQLSGGEQQRV 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 575 ALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNV-AVADRIVVLDEG 639
Cdd:TIGR02673 147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLnKRGTTVIVATHDLSLVdRVAHRVIILDDG 213
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
424-646 |
1.13e-28 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 114.45 E-value: 1.13e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGG--DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP--TGDADPHALW- 498
Cdd:COG4181 9 IELRGLTKTVGTGAGelTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDlfALDEDARARLr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 -QHVALVPQDYARWP-LTVRENITLgqPssrgdtavreaCEAAGADEVVDKlgagldtllAREWLN----GE-------E 565
Cdd:COG4181 89 aRHVGFVFQSFQLLPtLTALENVML--P-----------LELAGRRDARAR---------ARALLErvglGHrldhypaQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 566 LSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVAVADRIVVLDEGAVVQ 643
Cdd:COG4181 147 LSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERgtTLVLVTHDPALAARCDRVLRLRAGRLVE 226
|
...
gi 512154901 644 EGT 646
Cdd:COG4181 227 DTA 229
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
440-643 |
1.90e-28 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 119.63 E-value: 1.90e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP-----TGDAdPHA----LWQHVALVPQdyar 510
Cdd:PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEmrfasTTAA-LAAgvaiIYQELHLVPE---- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 511 wpLTVRENITLGQ-PSSRGdtAVREACEAAGADEVVDKLGAGLD--TLLARewlngeeLSGGQWQRIALGRAFFRQAGLL 587
Cdd:PRK11288 94 --MTVAENLYLGQlPHKGG--IVNRRLLNYEAREQLEHLGVDIDpdTPLKY-------LSIGQRQMVEIAKALARNARVI 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 588 VLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNV-AVADRIVVLDEGAVVQ 643
Cdd:PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELrAEGRVILYVSHRMEEIfALCDAITVFKDGRYVA 220
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
440-652 |
3.80e-28 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 113.00 E-value: 3.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQH-VALVPQDYARWP-LTVRE 517
Cdd:TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAgIAYVPQGREIFPrLTVEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 518 NITLG-QPSSRGDTAVreaceaagADEVVDkLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANL 596
Cdd:TIGR03410 95 NLLTGlAALPRRSRKI--------PDEIYE-LFPVLKEMLGRR---GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 597 DPRAEYRIFQRLRDLARDR--IVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELAR 652
Cdd:TIGR03410 163 QPSIIKDIGRVIRRLRAEGgmAILLVEQYLDFArELADRYYVMERGRVVASGAGDELDE 221
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
424-645 |
4.69e-28 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 111.93 E-value: 4.69e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGdaDPHALWQHV-A 502
Cdd:cd03268 1 LKTNDLTKTY--GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALRRIgA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVpqDYARW--PLTVRENIT-----LGQPSSRgdtavreaceaagADEVVDKLGagldtLLAREWLNGEELSGGQWQRIA 575
Cdd:cd03268 77 LI--EAPGFypNLTARENLRllarlLGIRKKR-------------IDEVLDVVG-----LKDSAKKKVKGFSLGMKQRLG 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 576 LGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNVA-VADRIVVLDEGAVVQEG 645
Cdd:cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGItVLISSHLLSEIQkVADRIGIINKGKLIEEG 208
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
424-653 |
1.42e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 112.83 E-value: 1.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKG---GDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGD--ADPHALW 498
Cdd:PRK13637 3 IKIENLTHIYMEGTpfeKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDkkVKLSDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 QHVALVPQ--DYARWPLTVRENITLGqPSSRG------DTAVREACEAAGADevvdklgagLDTLLAREWLngeELSGGQ 570
Cdd:PRK13637 83 KKVGLVFQypEYQLFEETIEKDIAFG-PINLGlseeeiENRVKRAMNIVGLD---------YEDYKDKSPF---ELSGGQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 571 WQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEGTY 647
Cdd:PRK13637 150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYnmTIILVSHSMEDVAkLADRIIVMNKGKCELQGTP 229
|
....*.
gi 512154901 648 QELARQ 653
Cdd:PRK13637 230 REVFKE 235
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
437-636 |
1.63e-27 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 110.02 E-value: 1.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVlwdgTPTGDADPHALWQHVALVpqdyARWPLTVR 516
Cdd:NF040873 4 GRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV----RRAGGARVAYVPQRSEVP----DSLPLTVR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 517 ENITLGQPSSRGDTAVREACEAAGADEVVDKLgaGLDTLLAREWlngEELSGGQWQRIALGRAFFRQAGLLVLDEPTANL 596
Cdd:NF040873 76 DLVAMGRWARRGLWRRLTRDDRAAVDDALERV--GLADLAGRQL---GELSGGQRQRALLAQGLAQEADLLLLDEPTTGL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 512154901 597 DPRAEYRIFQRLRDLARD-RIVLLVTHRITNVAVADRIVVL 636
Cdd:NF040873 151 DAESRERIIALLAEEHARgATVVVVTHDLELVRRADPCVLL 191
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
417-644 |
1.67e-27 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 116.66 E-value: 1.67e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 417 RPASPERIEIEAVCHRyagkggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH- 495
Cdd:COG1129 250 AAPGEVVLEVEGLSVG------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRd 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 496 ALWQHVALVPQDyaRW------PLTVRENITL---GQPSSRGdtAVREACEAAGADEVVDKLG---AGLDTLLArewlng 563
Cdd:COG1129 324 AIRAGIAYVPED--RKgeglvlDLSIRENITLaslDRLSRGG--LLDRRRERALAEEYIKRLRiktPSPEQPVG------ 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 564 eELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVthrITN-----VAVADRIVVLDE 638
Cdd:COG1129 394 -NLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIV---ISSelpelLGLSDRILVMRE 469
|
....*.
gi 512154901 639 GAVVQE 644
Cdd:COG1129 470 GRIVGE 475
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
429-656 |
2.53e-27 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 113.67 E-value: 2.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 429 VCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDAD------PHAlwQHVA 502
Cdd:TIGR02142 1 LSARFSKRLGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRkgiflpPEK--RRIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWP-LTVRENITLGQPSSRGD-TAVREaceaagaDEVVDKLGagLDTLLARewLNGEeLSGGQWQRIALGRAF 580
Cdd:TIGR02142 79 YVFQEARLFPhLSVRGNLRYGMKRARPSeRRISF-------ERVIELLG--IGHLLGR--LPGR-LSGGEKQRVAIGRAL 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RI-VLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQPGL 656
Cdd:TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEfGIpILYVSHSLQEVLrLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
424-654 |
2.66e-27 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 110.95 E-value: 2.66e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGD--ADPHALWQHV 501
Cdd:PRK09493 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDpkVDERLIRQEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYARWP-LTVRENITLGQPSSRGdtAVREACEAAgADEVVDKLGagldtLLAREWLNGEELSGGQWQRIALGRAF 580
Cdd:PRK09493 80 GMVFQQFYLFPhLTALENVMFGPLRVRG--ASKEEAEKQ-ARELLAKVG-----LAERAHHYPSELSGGQQQRVAIARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVL-LVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMvIVTHEIGFAeKVASRLIFIDKGRIAEDGDPQVLIKNP 227
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
424-654 |
2.80e-27 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 112.84 E-value: 2.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLP---TEGRVLWDGTPTGDADPHAL- 497
Cdd:COG0444 2 LEVRNLKVYFPTRRGVvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKELr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 ---WQHVALVPQDyarwPLT-----------VRENITLGQPSSRgdtavREACEaagadEVVDKLGA-GLDTllAREWLN 562
Cdd:COG0444 82 kirGREIQMIFQD----PMTslnpvmtvgdqIAEPLRIHGGLSK-----AEARE-----RAIELLERvGLPD--PERRLD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 563 G--EELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDP--RAEyrIFQRLRDLARDRI--VLLVTHRITNVA-VADRIVV 635
Cdd:COG0444 146 RypHELSGGMRQRVMIARALALEPKLLIADEPTTALDVtiQAQ--ILNLLKDLQRELGlaILFITHDLGVVAeIADRVAV 223
|
250
....*....|....*....
gi 512154901 636 LDEGAVVQEGTYQELARQP 654
Cdd:COG0444 224 MYAGRIVEEGPVEELFENP 242
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
424-659 |
6.52e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 110.66 E-value: 6.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGgDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:PRK13652 4 IETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 V---PQDYARWPlTVRENITLGqPSSRGdtaVREACEAAGADEVVDKLgaGLDTLLAREwlnGEELSGGQWQRIALGRAF 580
Cdd:PRK13652 83 VfqnPDDQIFSP-TVEQDIAFG-PINLG---LDEETVAHRVSSALHML--GLEELRDRV---PHHLSGGEKKRVAIAGVI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQPGLF 657
Cdd:PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETygMTVIFSTHQLDLVPeMADYIYVMDKGRIVAYGTVEEIFLQPDLL 232
|
..
gi 512154901 658 RQ 659
Cdd:PRK13652 233 AR 234
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
424-650 |
2.41e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 109.17 E-value: 2.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAgKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgDADPHALW---QH 500
Cdd:PRK13636 6 LKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI-DYSRKGLMklrES 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQ--DYARWPLTVRENIT-----LGQPSSRGDTAVREACEAAGADEVVDKlgagldtllAREWlngeeLSGGQWQR 573
Cdd:PRK13636 84 VGMVFQdpDNQLFSASVYQDVSfgavnLKLPEDEVRKRVDNALKRTGIEHLKDK---------PTHC-----LSFGQKKR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR--DRIVLLVTHRITNVAV-ADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKelGLTIIIATHDIDIVPLyCDNVFVMKEGRVILQGNPKEV 229
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
443-654 |
2.52e-26 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 110.96 E-value: 2.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTptgDADPHALWQH-VALVPQDYARWP-LTVRENI- 519
Cdd:PRK11432 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE---DVTHRSIQQRdICMVFQSYALFPhMSLGENVg 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 ----TLGQPSSRGDTAVREACE----AAGADEVVDklgagldtllarewlngeELSGGQWQRIALGRAFFRQAGLLVLDE 591
Cdd:PRK11432 101 yglkMLGVPKEERKQRVKEALElvdlAGFEDRYVD------------------QISGGQQQRVALARALILKPKVLLFDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 592 PTANLDPRAEYRIFQRLRDLAR--DRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK11432 163 PLSNLDANLRRSMREKIRELQQqfNITSLYVTHDQSEAfAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
424-650 |
3.61e-26 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 107.07 E-value: 3.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTptgDA--DPHALWQHV 501
Cdd:cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGH---DVvrEPREVRRRI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYARWP-LTVRENITL-----GQPSSRGDTAVREACEAAGADEVVDKLGAgldtllarewlngeELSGGQWQRIA 575
Cdd:cd03265 76 GIVFQDLSVDDeLTGWENLYIharlyGVPGAERRERIDELLDFVGLLEAADRLVK--------------TYSGGMRRRLE 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 576 LGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR--DRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQEL 650
Cdd:cd03265 142 IARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEefGMTILLTTHYMEEAeQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
440-654 |
4.85e-26 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 108.11 E-value: 4.85e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAL-----------WQHVALVPQdy 508
Cdd:cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELrelrrkkismvFQSFALLPH-- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 509 arwpLTVRENITLGQPSSRGDTAVREaceaAGADEVVDKLGagldtLLAREWLNGEELSGGQWQRIALGRAFFRQAGLLV 588
Cdd:cd03294 117 ----RTVLENVAFGLEVQGVPRAERE----ERAAEALELVG-----LEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 589 LDEPTANLDP--RAEYRifQRLRDLARD--RIVLLVTHRItNVAV--ADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:cd03294 184 MDEAFSALDPliRREMQ--DELLRLQAElqKTIVFITHDL-DEALrlGDRIAIMKDGRLVQVGTPEEILTNP 252
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
424-641 |
6.00e-26 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 106.34 E-value: 6.00e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHA---LWQH 500
Cdd:cd03292 1 IEFINVTKTYPN-GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAipyLRRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQDYARWP-LTVRENITLgqpssrgdtAVReaCEAAGADEVVDKLGAGLDT--LLAREWLNGEELSGGQWQRIALG 577
Cdd:cd03292 80 IGVVFQDFRLLPdRNVYENVAF---------ALE--VTGVPPREIRKRVPAALELvgLSHKHRALPAELSGGEQQRVAIA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTH--RITNvAVADRIVVLDEGAV 641
Cdd:cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKInKAGTTVVVATHakELVD-TTRHRVIALERGKL 214
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
424-646 |
7.06e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 107.91 E-value: 7.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRY-AGK--GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP-TGDA---DPHA 496
Cdd:PRK13649 3 INLQNVSYTYqAGTpfEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLiTSTSknkDIKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 497 LWQHVALVPQdYARWPL---TVRENITLGqPSSRG------DTAVREACEAAG-ADEVVDKlgagldtllarewlNGEEL 566
Cdd:PRK13649 83 IRKKVGLVFQ-FPESQLfeeTVLKDVAFG-PQNFGvsqeeaEALAREKLALVGiSESLFEK--------------NPFEL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 567 SGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNVA-VADRIVVLDEGAVVQE 644
Cdd:PRK13649 147 SGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMtIVLVTHLMDDVAnYADFVYVLEKGKLVLS 226
|
..
gi 512154901 645 GT 646
Cdd:PRK13649 227 GK 228
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
418-654 |
1.19e-25 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 106.66 E-value: 1.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 418 PASPERIEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLY--LP---TEGRVLWDGTP--TG 490
Cdd:COG1117 6 STLEPKIEVRNLNVYYGDK--QALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNdlIPgarVEGEILLDGEDiyDP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 491 DADPHALWQHVALVPQDYARWPLTVRENITLG----QPSSRG--DTAVREACEAAGA-DEVVDKLGAgldtllarewlNG 563
Cdd:COG1117 84 DVDVVELRRRVGMVFQKPNPFPKSIYDNVAYGlrlhGIKSKSelDEIVEESLRKAALwDEVKDRLKK-----------SA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 564 EELSGGQWQRIALGRAffrqagL------LVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHritNVA----VADRI 633
Cdd:COG1117 153 LGLSGGQQQRLCIARA------LavepevLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTH---NMQqaarVSDYT 223
|
250 260
....*....|....*....|.
gi 512154901 634 VVLDEGAVVQEGTYQELARQP 654
Cdd:COG1117 224 AFFYLGELVEFGPTEQIFTNP 244
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
424-650 |
2.22e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 105.99 E-value: 2.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDyarwPltvrENITLGQpSSRGDTAVREACEAAGADEVVDKLGAGLDTLLAREWLNGE--ELSGGQWQRIALGRAFF 581
Cdd:PRK13648 88 VFQN----P----DNQFVGS-IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEpnALSGGQKQRVAIAGVLA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 582 RQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLL--VTHRITNVAVADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIisITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
424-659 |
2.45e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 106.32 E-value: 2.45e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAgKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgDADPHALW---QH 500
Cdd:PRK13639 2 LETRDLKYSYP-DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI-KYDKKSLLevrKT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALV---PQDYARWPlTVRENIT-----LGQPSSRGDTAVREACEAAGADEVVDKlgagldtllarewlNGEELSGGQWQ 572
Cdd:PRK13639 80 VGIVfqnPDDQLFAP-TVEEDVAfgplnLGLSKEEVEKRVKEALKAVGMEGFENK--------------PPHHLSGGQKK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 573 RIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLV-THRITNVAV-ADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK13639 145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIIsTHDVDLVPVyADKVYVMSDGKIIKEGTPKEV 224
|
....*....
gi 512154901 651 ARQPGLFRQ 659
Cdd:PRK13639 225 FSDIETIRK 233
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
441-665 |
2.57e-25 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 105.48 E-value: 2.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARwP--LTVREN 518
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLT-PegITVREL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 519 ITLGQP---------SSRGDTAVREACEAAGADEVVDKLgagldtllarewlnGEELSGGQWQRIALGRAFFRQAGLLVL 589
Cdd:PRK11231 97 VAYGRSpwlslwgrlSAEDNARVNQAMEQTRINHLADRR--------------LTDLSGGQRQRAFLAMVLAQDTPVVLL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 590 DEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRItNVAV--ADRIVVLDEGAVVQEGTYQELArQPGLFRQLLSYQV 665
Cdd:PRK11231 163 DEPTTYLDINHQVELMRLMRELnTQGKTVVTVLHDL-NQASryCDHLVVLANGHVMAQGTPEEVM-TPGLLRTVFDVEA 239
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
421-645 |
3.66e-25 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 104.78 E-value: 3.66e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 421 PERIEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEG---RVLwdGTPTGDADPHAL 497
Cdd:COG1119 1 DPLLELRNVTVRRGGK--TILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGndvRLF--GERRGGEDVWEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 WQHVALV-P--QDYARWPLTVRE--------NITLGQPSSRGDTAVreaceaagADEVVDKLgaGLDTLLAREWLngeEL 566
Cdd:COG1119 77 RKRIGLVsPalQLRFPRDETVLDvvlsgffdSIGLYREPTDEQRER--------ARELLELL--GLAHLADRPFG---TL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 567 SGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI--VLLVTHRITNVAVA-DRIVVLDEGAVVQ 643
Cdd:COG1119 144 SQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAptLVLVTHHVEEIPPGiTHVLLLKDGRVVA 223
|
..
gi 512154901 644 EG 645
Cdd:COG1119 224 AG 225
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
418-654 |
4.62e-25 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 109.77 E-value: 4.62e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 418 PASPERIEIEAVCHRYAGKGG---------DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLyLPTEGRVLWDGTP 488
Cdd:COG4172 270 PDAPPLLEARDLKVWFPIKRGlfrrtvghvKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRL-IPSEGEIRFDGQD 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 489 TGDADPHA---LWQHVALVPQD-YA----RwpLTVRENITLG----QPSsrGDTAVREACEAAGADEVvdklgaGLDtll 556
Cdd:COG4172 349 LDGLSRRAlrpLRRRMQVVFQDpFGslspR--MTVGQIIAEGlrvhGPG--LSAAERRARVAEALEEV------GLD--- 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 557 aREWLN--GEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIV--LLVTHRITNV-AVAD 631
Cdd:COG4172 416 -PAARHryPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLayLFISHDLAVVrALAH 494
|
250 260
....*....|....*....|...
gi 512154901 632 RIVVLDEGAVVQEGTYQELARQP 654
Cdd:COG4172 495 RVMVMKDGKVVEQGPTEQVFDAP 517
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
423-646 |
4.64e-25 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 103.26 E-value: 4.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWPLTVRENITLGQPSSrgDTAVREACEAAGAdevvdklgagldtllarewlnGEELSGGQWQRIALGRAFFR 582
Cdd:cd03369 86 IIPQDPTLFSGTIRSNLDPFDEYS--DEEIYGALRVSEG---------------------GLNLSQGQRQLLCLARALLK 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGT 646
Cdd:cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
445-645 |
4.98e-25 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 103.40 E-value: 4.98e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 445 SLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVALVPQDYARWP-LTVRENITLGQ 523
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQ--RPVSMLFQENNLFAhLTVRQNIGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 524 PSSRGDTAVREACEAAGADEVvdklgaGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYR 603
Cdd:TIGR01277 96 HPGLKLNAEQQEKVVDAAQQV------GIADYLDRL---PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 512154901 604 IFQRLRDLA--RDRIVLLVTHRITN-VAVADRIVVLDEGAVVQEG 645
Cdd:TIGR01277 167 MLALVKQLCseRQRTLLMVTHHLSDaRAIASQIAVVSQGKIKVVS 211
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
418-654 |
5.11e-25 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 109.50 E-value: 5.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 418 PASPERIEIEAVCHRYAGKGGD---ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADP 494
Cdd:COG4615 322 PADFQTLELRGVTYRYPGEDGDegfTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADNR 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 495 HALWQHVALVPQDY---ARwpltvreniTLGQPSSRGDTAVREACEAAGADEVVDKLGAGLDTLlarewlngeELSGGQW 571
Cdd:COG4615 402 EAYRQLFSAVFSDFhlfDR---------LLGLDGEADPARARELLERLELDHKVSVEDGRFSTT---------DLSQGQR 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 572 QRIALGRAFFRQAGLLVLDEPTANLDP--RaeyRIF-----QRLRdlARDRIVLLVTHRITNVAVADRIVVLDEGAVVqE 644
Cdd:COG4615 464 KRLALLVALLEDRPILVFDEWAADQDPefR---RVFytellPELK--ARGKTVIAISHDDRYFDLADRVLKMDYGKLV-E 537
|
250
....*....|
gi 512154901 645 GTYQELARQP 654
Cdd:COG4615 538 LTGPAALAAS 547
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
440-639 |
5.72e-25 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 109.25 E-value: 5.72e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYlPT---EGRVLWDGTP--------TGDADPHALWQHVALVPQdy 508
Cdd:PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHgtyEGEIIFEGEElqasnirdTERAGIAIIHQELALVKE-- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 509 arwpLTVRENITLGQPSSRG-----DTAVREaceaagADEVVDKLGAGLDTLLARewlngEELSGGQWQRIALGRAFFRQ 583
Cdd:PRK13549 97 ----LSVLENIFLGNEITPGgimdyDAMYLR------AQKLLAQLKLDINPATPV-----GNLGLGQQQLVEIAKALNKQ 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 584 AGLLVLDEPTANLDpRAEYRIFQR-LRDL-ARDRIVLLVTHRITNV-AVADRIVVLDEG 639
Cdd:PRK13549 162 ARLLILDEPTASLT-ESETAVLLDiIRDLkAHGIACIYISHKLNEVkAISDTICVIRDG 219
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
424-656 |
7.15e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 104.68 E-value: 7.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAgKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGD-ADPHALWQHVA 502
Cdd:PRK13644 2 IRLENVSYSYP-DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDfSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWPL--TVRENITLGQPS-SRGDTAVREACEAAGADevvdklgAGLDTLLARewlNGEELSGGQWQRIALGRA 579
Cdd:PRK13644 81 IVFQNPETQFVgrTVEEDLAFGPENlCLPPIEIRKRVDRALAE-------IGLEKYRHR---SPKTLSGGQGQCVALAGI 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 580 FFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGL 656
Cdd:PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKgKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSL 228
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
437-641 |
7.44e-25 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 102.13 E-value: 7.44e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH-ALWQHVALVPQDYARW---- 511
Cdd:cd03215 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRdAIRAGIAYVPEDRKREglvl 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 512 PLTVRENITLGQpssrgdtavreaceaagadevvdklgagldtllarewlngeELSGGQWQRIALGRAFFRQAGLLVLDE 591
Cdd:cd03215 92 DLSVAENIALSS-----------------------------------------LLSGGNQQKVVLARWLARDPRVLILDE 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 512154901 592 PTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAV 641
Cdd:cd03215 131 PTRGVDVGAKAEIYRLIRELADAGKaVLLISSELDELlGLCDRILVMYEGRI 182
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
423-669 |
8.70e-25 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 110.81 E-value: 8.70e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWPLTVRENitLGQPSSRGDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFR 582
Cdd:TIGR00957 1364 IIPQDPVLFSGSLRMN--LDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAE---GGENLSVGQRQLVCLARALLR 1438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFrqlls 662
Cdd:TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIF----- 1513
|
....*..
gi 512154901 663 YQVTSDA 669
Cdd:TIGR00957 1514 YSMAKDA 1520
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
424-644 |
1.01e-24 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 104.12 E-value: 1.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYA-----GKGGDA--LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADP-- 494
Cdd:TIGR02769 3 LEVRDVTHTYRtgglfGAKQRApvLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRkq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 495 -HALWQHVALVPQDY--ARWP-LTVRENItlGQPSsRGDTAVREACEAAGADEVVDKLGagLDTLLAREWlnGEELSGGQ 570
Cdd:TIGR02769 83 rRAFRRDVQLVFQDSpsAVNPrMTVRQII--GEPL-RHLTSLDESEQKARIAELLDMVG--LRSEDADKL--PRQLSGGQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 571 WQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRITNV-AVADRIVVLDEGAVVQE 644
Cdd:TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAfgTAYLFITHDLRLVqSFCQRVAVMDKGQIVEE 232
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
440-663 |
1.17e-24 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 103.17 E-value: 1.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG------TPTGDADPHALWQHVALVPQDYARWP- 512
Cdd:PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhfdfsKTPSDKAIRELRRNVGMVFQQYNLWPh 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 513 LTVRENITlgqpssrgdtavrEA-CEAAGADEVVDKLGAglDTLLAREWLNGE------ELSGGQWQRIALGRAFFRQAG 585
Cdd:PRK11124 97 LTVQQNLI-------------EApCRVLGLSKDQALARA--EKLLERLRLKPYadrfplHLSGGQQQRVAIARALMMEPQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 586 LLVLDEPTANLDPRAEYRIFQRLRDLARDRIV-LLVTHRItNVA--VADRIVVLDEGAVVQEGTYQELAR-QPGLFRQLL 661
Cdd:PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITqVIVTHEV-EVArkTASRVVYMENGHIVEQGDASCFTQpQTEAFKNYL 240
|
..
gi 512154901 662 SY 663
Cdd:PRK11124 241 SH 242
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
441-649 |
2.23e-24 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 102.61 E-value: 2.23e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLyLPTEGRVLWDGTPTGDADPHALWQHVALVPQ-DYARWPLTVRENI 519
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGL-LPGQGEILLNGRPLSDWSAAELARHRAYLSQqQSPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLGQPSSrgdtAVREACEAAgADEVVDKLgaGLDTLLARewlNGEELSGGQWQRIALGRAFFR-------QAGLLVLDEP 592
Cdd:COG4138 91 ALHQPAG----ASSEAVEQL-LAQLAEAL--GLEDKLSR---PLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 593 TANLDPR---AEYRIFQRLRDLARDriVLLVTHRItNVAV--ADRIVVLDEGAVVQEGTYQE 649
Cdd:COG4138 161 MNSLDVAqqaALDRLLRELCQQGIT--VVMSSHDL-NHTLrhADRVWLLKQGKLVASGETAE 219
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
423-661 |
2.99e-24 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 102.68 E-value: 2.99e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDYARWPLTVRENItlgQPSSR-GDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFF 581
Cdd:cd03288 99 IILQDPILFSGSIRFNL---DPECKcTDDRLWEALEIAQLKNMVKSLPGGLDAVVTE---GGENFSVGQRQLFCLARAFV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 582 RQAGLLVLDEPTANLDPRAEyRIFQRLRDLA-RDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQEL-ARQPGLFRQ 659
Cdd:cd03288 173 RKSSILIMDEATASIDMATE-NILQKVVMTAfADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLlAQEDGVFAS 251
|
..
gi 512154901 660 LL 661
Cdd:cd03288 252 LV 253
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
424-654 |
3.34e-24 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 102.14 E-value: 3.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWdGTPTGDADPH-------- 495
Cdd:PRK11264 4 IEVKNLVKKF--HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV-GDITIDTARSlsqqkgli 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 496 -ALWQHVALVPQDYARWP-LTVRENITLGQPSSRGDtaVREACEAAGADevvdklgagldtLLAREWLNGEE------LS 567
Cdd:PRK11264 81 rQLRQHVGFVFQNFNLFPhRTVLENIIEGPVIVKGE--PKEEATARARE------------LLAKVGLAGKEtsyprrLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 568 GGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNVA-VADRIVVLDEGAVVQEG 645
Cdd:PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEkRTMVIVTHEMSFARdVADRAIFMDQGRIVEQG 226
|
....*....
gi 512154901 646 TYQELARQP 654
Cdd:PRK11264 227 PAKALFADP 235
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
437-624 |
6.12e-24 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 99.80 E-value: 6.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPT--GDADPHALWQHVALVPQD------Y 508
Cdd:TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLdySRKGLLERRQRVGLVFQDpddqlfA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 509 ArwplTVRENIT-----LGQPSSRGDTAVREACEAAGADEVVDKLGagldtllarewlngEELSGGQWQRIALGRAFFRQ 583
Cdd:TIGR01166 84 A----DVDQDVAfgplnLGLSEAEVERRVREALTAVGASGLRERPT--------------HCLSGGEKKRVAIAGAVAMR 145
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRI 624
Cdd:TIGR01166 146 PDVLLLDEPTAGLDPAGREQMLAILRRLrAEGMTVVISTHDV 187
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
409-642 |
8.16e-24 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 105.49 E-value: 8.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 409 FRMRRGTCRPASPeRIEIEAVCHRyAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP 488
Cdd:COG3845 244 LRVEKAPAEPGEV-VLEVENLSVR-DDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGED 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 489 TGDADPHALWQH-VALVPQDYARW----PLTVRENITLGQ----PSSRGDTAVREACEAAgADEVVDKLG---AGLDTLL 556
Cdd:COG3845 322 ITGLSPRERRRLgVAYIPEDRLGRglvpDMSVAENLILGRyrrpPFSRGGFLDRKAIRAF-AEELIEEFDvrtPGPDTPA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 557 ARewlngeeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIV 634
Cdd:COG3845 401 RS-------LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAaVLLISEDLDEIlALSDRIA 473
|
....*...
gi 512154901 635 VLDEGAVV 642
Cdd:COG3845 474 VMYEGRIV 481
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
424-660 |
1.17e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 101.42 E-value: 1.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLP---TEGRVLWDGTPTGDADPHALWQH 500
Cdd:PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnPNSKITVDGITLTAKTVWDIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQ--DYARWPLTVRENITLGQ-----PSSRGDTAVREACEAAGADEVVDKLGAgldtllarewlngeELSGGQWQR 573
Cdd:PRK13640 86 VGIVFQnpDNQFVGATVGDDVAFGLenravPRPEMIKIVRDVLADVGMLDYIDSEPA--------------NLSGGQKQR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELA 651
Cdd:PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNnlTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231
|
....*....
gi 512154901 652 RQPGLFRQL 660
Cdd:PRK13640 232 SKVEMLKEI 240
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
437-654 |
1.56e-23 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 102.99 E-value: 1.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVALVPQDYARWP-LTV 515
Cdd:PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ--RPINMMFQSYALFPhMTV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENITLGQPSSRgdtavreaceaAGADEVVDKLGAGLDTLLAREWLNGE--ELSGGQWQRIALGRAFFRQAGLLVLDEPT 593
Cdd:PRK11607 109 EQNIAFGLKQDK-----------LPKAEIASRVNEMLGLVHMQEFAKRKphQLSGGQRQRVALARSLAKRPKLLLLDEPM 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 594 ANLDPRAEYRIFQRLRDLArDRI---VLLVTH-RITNVAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK11607 178 GALDKKLRDRMQLEVVDIL-ERVgvtCVMVTHdQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
441-645 |
1.80e-23 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 103.38 E-value: 1.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYA-RWPLTVRENI 519
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSlSFEFDVRQVV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLGQPSSRG---------DTAVREACEAAGADEVVDKlgagldtllarewlNGEELSGGQWQRIALGRAFFRQAGLLVLD 590
Cdd:PRK09536 99 EMGRTPHRSrfdtwtetdRAAVERAMERTGVAQFADR--------------PVTSLSGGERQRVLLARALAQATPVLLLD 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 591 EPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNVA-VADRIVVLDEGAVVQEG 645
Cdd:PRK09536 165 EPTASLDINHQVRTLELVRRLVDDgKTAVAAIHDLDLAArYCDELVLLADGRVRAAG 221
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
430-645 |
2.31e-23 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 98.88 E-value: 2.31e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 430 CHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTL----SKLACGLYLpTEGRVLWDGTPTgdaDPHALWQHVALVP 505
Cdd:cd03234 12 KAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLldaiSGRVEGGGT-TSGQILFNGQPR---KPDQFQKCVAYVR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 506 QDYARWP-LTVRENIT------LGQPSSRGDTAVREAceaagaDEVVDKLGaglDTLLAREWLNGeeLSGGQWQRIALGR 578
Cdd:cd03234 88 QDDILLPgLTVRETLTytailrLPRKSSDAIRKKRVE------DVLLRDLA---LTRIGGNLVKG--ISGGERRRVSIAV 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 579 AFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLA-RDRIVLLVTH--RITNVAVADRIVVLDEGAVVQEG 645
Cdd:cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLArRNRIVILTIHqpRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
420-662 |
2.33e-23 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 99.77 E-value: 2.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 420 SPERIEIEAVCHRYAGKggdALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLP----TEGRVLWDGTPTGDADPH 495
Cdd:PRK10418 1 MPQQIELRNIALQAAQP---LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVAPCALR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 496 AlwQHVALVPQD--YARWPLT-----VRENI-TLGQPSSrgDTAVREACEAAGADEVVDKLGagldtllarewLNGEELS 567
Cdd:PRK10418 78 G--RKIATIMQNprSAFNPLHtmhthARETClALGKPAD--DATLTAALEAVGLENAARVLK-----------LYPFEMS 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 568 GGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI--VLLVTHRITNVA-VADRIVVLDEGAVVQE 644
Cdd:PRK10418 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRAlgMLLVTHDMGVVArLADDVAVMSHGRIVEQ 222
|
250 260
....*....|....*....|
gi 512154901 645 GTYQELARQPG--LFRQLLS 662
Cdd:PRK10418 223 GDVETLFNAPKhaVTRSLVS 242
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
445-650 |
3.45e-23 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 98.89 E-value: 3.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 445 SLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG-----TPTGDADPHALWQHVALVPQdyarwpLTVRENI 519
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGqdhttTPPSRRPVSMLFQENNLFSH------LTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLG-QPSSRGDTAVREACEAAgADEVvdklgaGLDTLLARewLNGEeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLDP 598
Cdd:PRK10771 93 GLGlNPGLKLNAAQREKLHAI-ARQM------GIEDLLAR--LPGQ-LSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 599 RAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK10771 163 ALRQEMLTLVSQVCQERqlTLLMVSHSLEDAArIAPRSLVVADGRIAWDGPTDEL 217
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
424-646 |
3.56e-23 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 99.76 E-value: 3.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDA-------LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGD---AD 493
Cdd:PRK10419 4 LNVSGLSHHYAHGGLSGkhqhqtvLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlnrAQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 494 PHALWQHVALVPQDY--ARWP-LTVRENItlGQPsSRGDTAVREACEAAGADEVVDKLGAGlDTLLAREwlnGEELSGGQ 570
Cdd:PRK10419 84 RKAFRRDIQMVFQDSisAVNPrKTVREII--REP-LRHLLSLDKAERLARASEMLRAVDLD-DSVLDKR---PPQLSGGQ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 571 WQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR--DRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGT 646
Cdd:PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQqfGTACLFITHDLRLVErFCQRVMVMDNGQIVETQP 235
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
456-654 |
4.64e-23 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 100.65 E-value: 4.64e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 456 LVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVALVPQDYARWP-LTVRENITLG-----QPSSRGD 529
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL--RHINMVFQSYALFPhMTVEENVAFGlkmrkVPRAEIK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 530 TAVREACEAAGADEVVDKlgagldtllarewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLR 609
Cdd:TIGR01187 79 PRVLEALRLVQLEEFADR--------------KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELK 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 512154901 610 DLARDR--IVLLVTH-RITNVAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:TIGR01187 145 TIQEQLgiTFVFVTHdQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
424-654 |
5.66e-23 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 98.55 E-value: 5.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG------TPTGDADPHAL 497
Cdd:COG4161 3 IQLKNINCFYGSH--QALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGhqfdfsQKPSEKAIRLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 WQHVALVPQDYARWP-LTVRENIT------LGQPSSrgdtavrEACEAAgaDEVVDKLGagLDTLLAREWLNgeeLSGGQ 570
Cdd:COG4161 81 RQKVGMVFQQYNLWPhLTVMENLIeapckvLGLSKE-------QAREKA--MKLLARLR--LTDKADRFPLH---LSGGQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 571 WQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIV-LLVTHRItNVA--VADRIVVLDEGAVVQEGTy 647
Cdd:COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITqVIVTHEV-EFArkVASQVVYMEKGRIIEQGD- 224
|
....*..
gi 512154901 648 QELARQP 654
Cdd:COG4161 225 ASHFTQP 231
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
440-654 |
6.73e-23 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 100.19 E-value: 6.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALW---QHVALVPQD-YA----Rw 511
Cdd:COG4608 33 AVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRplrRRMQMVFQDpYAslnpR- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 512 pLTVRENI-------TLGQPSSRgDTAVREACEAAGadevvdklgagldtlLAREWLN--GEELSGGQWQRIALGRAFFR 582
Cdd:COG4608 112 -MTVGDIIaeplrihGLASKAER-RERVAELLELVG---------------LRPEHADryPHEFSGGQRQRIGIARALAL 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLaRDRI---VLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:COG4608 175 NPKLIVCDEPVSALDVSIQAQVLNLLEDL-QDELgltYLFISHDLSVVRhISDRVAVMYLGKIVEIAPRDELYARP 249
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
440-655 |
7.13e-23 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 99.77 E-value: 7.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTptgD--ADPHALWQHVALVPQDYARWP-LTVR 516
Cdd:TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGY---DvvREPRKVRRSIGIVPQYASVDEdLTGR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 517 ENITL-----GQPSSRGDTAVREACEAAGADEVVDKLGAGLdtllarewlngeelSGGQWQRIALGRAFFRQAGLLVLDE 591
Cdd:TIGR01188 85 ENLEMmgrlyGLPKDEAEERAEELLELFELGEAADRPVGTY--------------SGGMRRRLDIAASLIHQPDVLFLDE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 592 PTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQPG 655
Cdd:TIGR01188 151 PTTGLDPRTRRAIWDYIRALKEEGVtILLTTHYMEEAdKLCDRIAIIDHGRIIAEGTPEELKRRLG 216
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
441-645 |
7.58e-23 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 97.54 E-value: 7.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALwqhvaLVPQDYARWP-LTVRENI 519
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM-----VVFQNYSLLPwLTVRENI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLG-------QPSSRGDTAVREACEAAGADEVVDKLGAgldtllarewlngeELSGGQWQRIALGRAFFRQAGLLVLDEP 592
Cdd:TIGR01184 76 ALAvdrvlpdLSKSERRAIVEEHIALVGLTEAADKRPG--------------QLSGGMKQRVAIARALSIRPKVLLLDEP 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 593 TANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITN-VAVADRIVVLDEGAVVQEG 645
Cdd:TIGR01184 142 FGALDALTRGNLQEELMQIWEEHrvTVLMVTHDVDEaLLLSDRVVMLTNGPAANIG 197
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
429-654 |
9.72e-23 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 100.49 E-value: 9.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 429 VCHRYagkgGDAL--ANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVALVPQ 506
Cdd:PRK11000 9 VTKAY----GDVVisKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE--RGVGMVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 507 DYARWP-LTVRENITLGQPSSRGDTAVREAceaaGADEVVDKLGagLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAG 585
Cdd:PRK11000 83 SYALYPhLSVAENMSFGLKLAGAKKEEINQ----RVNQVAEVLQ--LAHLLDRK---PKALSGGQRQRVAIGRTLVAEPS 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 586 LLVLDEPTANLDP--RAEYRI-----FQRLRdlardRIVLLVTH-RITNVAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK11000 154 VFLLDEPLSNLDAalRVQMRIeisrlHKRLG-----RTMIYVTHdQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
418-650 |
1.03e-22 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 99.11 E-value: 1.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 418 PASPERIEIEAVCHRYagkgGDALA--NVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH 495
Cdd:PRK13537 2 PMSVAPIDFRNVEKRY----GDKLVvdGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 496 ALwQHVALVPQ-DYARWPLTVRENITL-----GQPSSRGDTAVREACEAAGADEVVD-KLGagldtllarewlngeELSG 568
Cdd:PRK13537 78 AR-QRVGVVPQfDNLDPDFTVRENLLVfgryfGLSAAAARALVPPLLEFAKLENKADaKVG---------------ELSG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 569 GQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGT 646
Cdd:PRK13537 142 GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLlARGKTILLTTHFMEEAErLCDRLCVIEEGRKIAEGA 221
|
....
gi 512154901 647 YQEL 650
Cdd:PRK13537 222 PHAL 225
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
441-638 |
1.48e-22 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 96.40 E-value: 1.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLP---TEGRVLWDGTPTGDADPHAlwQHVALVPQDYARWP-LTVR 516
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNGRRLTALPAEQ--RRIGILFQDDLLFPhLSVG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 517 ENITLGQPSSRGDTAVREACEAAGADevvdklgAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANL 596
Cdd:COG4136 95 ENLAFALPPTIGRAQRRARVEQALEE-------AGLAGFADRD---PATLSGGQRARVALLRALLAEPRALLLDEPFSKL 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 512154901 597 DP--RAEYR--IFQRLRDlaRDRIVLLVTHRITNVAVADRIVVLDE 638
Cdd:COG4136 165 DAalRAQFRefVFEQIRQ--RGIPALLVTHDEEDAPAAGRVLDLGN 208
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
415-650 |
1.70e-22 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 101.67 E-value: 1.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 415 TCRPASPERIEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADP 494
Cdd:PRK15439 3 TSDTTAPPLLCARSISKQYSGV--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 495 ---HALwqHVALVPQDYARWP-LTVRENITLGQPSSRGDTAVREA------CE-----AAGADEVVDKlgagldtllare 559
Cdd:PRK15439 81 akaHQL--GIYLVPQEPLLFPnLSVKENILFGLPKRQASMQKMKQllaalgCQldldsSAGSLEVADR------------ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 560 wlngeelsggqwQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNV-AVADRIVVLD 637
Cdd:PRK15439 147 ------------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELlAQGVGIVFISHKLPEIrQLADRISVMR 214
|
250
....*....|...
gi 512154901 638 EGAVVQEGTYQEL 650
Cdd:PRK15439 215 DGTIALSGKTADL 227
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
420-650 |
2.00e-22 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 99.13 E-value: 2.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 420 SPERIEIEAVCHRYAGKGgdALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgDADPHALWQ 499
Cdd:PRK13536 38 STVAIDLAGVSKSYGDKA--VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV-PARARLARA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 500 HVALVPQ-DYARWPLTVRENITL-----GQPSSRGDTAVREACEAAgadevvdKLGAGLDTLLArewlngeELSGGQWQR 573
Cdd:PRK13536 115 RIGVVPQfDNLDLEFTVRENLLVfgryfGMSTREIEAVIPSLLEFA-------RLESKADARVS-------DLSGGMKRR 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRD-LARDRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSlLARGKTILLTTHFMEEAErLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
422-636 |
2.15e-22 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 97.24 E-value: 2.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 422 ERIEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP-TG-DADPHAL 497
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQPqpALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPvTGpGADRGVV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 WQHVALVPqdyarWpLTVRENITLGQpSSRGdtaVREACEAAGADEVVDKLG-AGLDTllAREWlngeELSGGQWQRIAL 576
Cdd:COG4525 82 FQKDALLP-----W-LNVLDNVAFGL-RLRG---VPKAERRARAEELLALVGlADFAR--RRIW----QLSGGMRQRVGI 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRITN-VAVADRIVVL 636
Cdd:COG4525 146 ARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRtgKGVFLITHSVEEaLFLATRLVVM 208
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
424-646 |
3.12e-22 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 98.72 E-value: 3.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG---TPTGDADPHALW 498
Cdd:PRK11153 2 IELKNISKVFPQGGRTihALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGqdlTALSEKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 QHVALVPQDY----ARwplTVRENITLgqpssrgdtavreACEAAGADEvvDKLGAGLDTLLAREWLNGE------ELSG 568
Cdd:PRK11153 82 RQIGMIFQHFnllsSR---TVFDNVAL-------------PLELAGTPK--AEIKARVTELLELVGLSDKadrypaQLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 569 GQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:PRK11153 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELglTIVLITHEMDVVkRICDRVAVIDAGRLVEQG 223
|
.
gi 512154901 646 T 646
Cdd:PRK11153 224 T 224
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
441-654 |
3.41e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 96.52 E-value: 3.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKL---ACGLYLP--TEGRVLWDGTPTGDADPHALWQHVALVPQDYARWP-LT 514
Cdd:PRK14247 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVfnrLIELYPEarVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPnLS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 515 VRENITLGQPSSR-------GDTAVREACEAAGA-DEVVDKLGAgldtllarewlNGEELSGGQWQRIALGRAFFRQAGL 586
Cdd:PRK14247 99 IFENVALGLKLNRlvkskkeLQERVRWALEKAQLwDEVKDRLDA-----------PAGKLSGGQQQRLCIARALAFQPEV 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 587 LVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK14247 168 LLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAArISDYVAFLYKGQIVEWGPTREVFTNP 236
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
424-654 |
3.48e-22 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 98.87 E-value: 3.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVAL 503
Cdd:PRK09452 15 VELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN--RHVNT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITLG-----QPSSRGDTAVREACEAAGADEVVDKlgagldtllarewlNGEELSGGQWQRIALG 577
Cdd:PRK09452 91 VFQSYALFPhMTVFENVAFGlrmqkTPAAEITPRVMEALRMVQLEEFAQR--------------KPHQLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIV--LLVTH-RITNVAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGItfVFVTHdQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
441-639 |
4.32e-22 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 100.65 E-value: 4.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLwdgTPTGDadphalwqHVALVPQD-YArwPL-TVREN 518
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIA---RPAGA--------RVLFLPQRpYL--PLgTLREA 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 519 ITL-GQPSSRGDTAVREACEAAGADEVVDKLGAGLDtllareWlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLD 597
Cdd:COG4178 446 LLYpATAEAFSDAELREALEAVGLGHLAERLDEEAD------W--DQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALD 517
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 512154901 598 PRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEG 639
Cdd:COG4178 518 EENEAALYQLLREELPGTTVISVGHRSTLAAFHDRVLELTGD 559
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
426-641 |
5.19e-22 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 95.90 E-value: 5.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 426 IEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDA--DPHALWQHVAL 503
Cdd:PRK11247 15 LNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAreDTRLMFQDARL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPqdyarWPlTVRENITLGQpssRGD--TAVREACEAAG-ADEvvdklgagldtllAREWlnGEELSGGQWQRIALGRAF 580
Cdd:PRK11247 93 LP-----WK-KVIDNVGLGL---KGQwrDAALQALAAVGlADR-------------ANEW--PAALSGGQKQRVALARAL 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITN-VAVADRIVVLDEGAV 641
Cdd:PRK11247 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHgfTVLLVTHDVSEaVAMADRVLLIEEGKI 212
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
424-650 |
6.20e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 96.62 E-value: 6.20e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGG---DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRvlwdgTPTGDADPHA---- 496
Cdd:PRK13645 7 IILDNVSYTYAKKTPfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ-----TIVGDYAIPAnlkk 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 497 ------LWQHVALVPQ--DYARWPLTVRENITLGqPSSRGdtavreaceaAGADEVVDKLGAGLDTL-LAREWLNGE--E 565
Cdd:PRK13645 82 ikevkrLRKEIGLVFQfpEYQLFQETIEKDIAFG-PVNLG----------ENKQEAYKKVPELLKLVqLPEDYVKRSpfE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 566 LSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAE---YRIFQRLRDLARDRIVlLVTHRITNV-AVADRIVVLDEGAV 641
Cdd:PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEedfINLFERLNKEYKKRII-MVTHNMDQVlRIADEVIVMHEGKV 229
|
....*....
gi 512154901 642 VQEGTYQEL 650
Cdd:PRK13645 230 ISIGSPFEI 238
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
437-661 |
8.35e-22 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 96.08 E-value: 8.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGtptgdadphalwqHVALVPQDYARWPLTVR 516
Cdd:cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIK 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 517 ENITLGqpSSRGDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANL 596
Cdd:cd03291 116 ENIIFG--VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 597 DPRAEYRIFQR-LRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLL 661
Cdd:cd03291 191 DVFTEKEIFEScVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
441-654 |
8.39e-22 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 97.46 E-value: 8.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDAdpHALWQHVALVPQDYARWP-LTVRENI 519
Cdd:PRK10851 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL--HARDRKVGFVFQHYALFRhMTVFDNI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLG---QPSsrgdtavREACEAAGADEVVDKLgagLDTL----LAREWlnGEELSGGQWQRIALGRAFFRQAGLLVLDEP 592
Cdd:PRK10851 96 AFGltvLPR-------RERPNAAAIKAKVTQL---LEMVqlahLADRY--PAQLSGGQKQRVALARALAVEPQILLLDEP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 593 TANLDP--RAEYRifQRLRDLARDR--IVLLVTH-RITNVAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK10851 164 FGALDAqvRKELR--RWLRQLHEELkfTSVFVTHdQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
423-659 |
9.01e-22 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 100.87 E-value: 9.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGGDAL-ANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLY-------------------------- 475
Cdd:PTZ00265 1165 KIEIMDVNFRYISRPNVPIyKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYdlkndhhivfknehtndmtneqdyqg 1244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 476 ----------------------------LPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENITLG-QPSS 526
Cdd:PTZ00265 1245 deeqnvgmknvnefsltkeggsgedstvFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGkEDAT 1324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 527 RGDtaVREACEAAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQ 606
Cdd:PTZ00265 1325 RED--VKRACKFAAIDEFIESLPNKYDTNVGPY---GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 607 RLRDL--ARDRIVLLVTHRITNVAVADRIVVLDE----GAVVQ-EGTYQE-LARQPGLFRQ 659
Cdd:PTZ00265 1400 TIVDIkdKADKTIITIAHRIASIKRSDKIVVFNNpdrtGSFVQaHGTHEElLSVQDGVYKK 1460
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
441-661 |
9.84e-22 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 100.76 E-value: 9.84e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGtptgdadphalwqHVALVPQDYARWPLTVRENIT 520
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNII 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 521 LGQPSSRGD-TAVREACEAagaDEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPR 599
Cdd:TIGR01271 509 FGLSYDEYRyTSVIKACQL---EEDIALFPEKDKTVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 600 AEYRIFQR-LRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQEL-ARQPGLFRQLL 661
Cdd:TIGR01271 583 TEKEIFEScLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELqAKRPDFSSLLL 646
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
424-645 |
1.79e-21 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 93.20 E-value: 1.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRY--AGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgDADPHALWQHV 501
Cdd:cd03266 2 ITADALTKRFrdVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV-VKEPAEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYARWP-LTVRENItlgQPSSRGDTAVREACEAAgADEVVDKLgaGLDTLLAREwlnGEELSGGQWQRIALGRAF 580
Cdd:cd03266 81 GFVSDSTGLYDrLTARENL---EYFAGLYGLKGDELTAR-LEELADRL--GMEELLDRR---VGGFSTGMRQKVAIARAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLrALGKCILFSTHIMQEVeRLCDRVVVLHRGRVVYEG 218
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
424-650 |
1.86e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 95.28 E-value: 1.86e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYA------GKGgdaLANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG---TP-TGDAD 493
Cdd:PRK13641 3 IKFENVDYIYSpgtpmeKKG---LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGyhiTPeTGNKN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 494 PHALWQHVALVPQ--DYARWPLTVRENITLGqPSSRGDTAvREACEAAgaDEVVDKLGagLDTLLAREwlNGEELSGGQW 571
Cdd:PRK13641 80 LKKLRKKVSLVFQfpEAQLFENTVLKDVEFG-PKNFGFSE-DEAKEKA--LKWLKKVG--LSEDLISK--SPFELSGGQM 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 572 QRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQE 649
Cdd:PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAgHTVILVTHNMDDVAeYADDVLVLEHGKLIKHASPKE 231
|
.
gi 512154901 650 L 650
Cdd:PRK13641 232 I 232
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
424-657 |
1.91e-21 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 93.23 E-value: 1.91e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWqhvAL 503
Cdd:TIGR03740 1 LETKNLSKRF--GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIG---SL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 V--PQDYARwpLTVRENI-----TLGQPSSRgdtavreaceaagADEVVDKLGAGLDtllarEWLNGEELSGGQWQRIAL 576
Cdd:TIGR03740 76 IesPPLYEN--LTARENLkvhttLLGLPDSR-------------IDEVLNIVDLTNT-----GKKKAKQFSLGMKQRLGI 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPraeYRIfQRLRDLARD-----RIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQEL 650
Cdd:TIGR03740 136 AIALLNHPKLLILDEPTNGLDP---IGI-QELRELIRSfpeqgITVILSSHILSEVQqLADHIGIISEGVLGYQGKINKS 211
|
....*..
gi 512154901 651 ARQPGLF 657
Cdd:TIGR03740 212 ENLEKLF 218
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
424-654 |
6.60e-21 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 94.91 E-value: 6.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAlwQHVAL 503
Cdd:PRK11650 4 LKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD--RDIAM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWP-LTVRENITLG---QPSSRGDTAVREAcEAAGADEvvdklgagLDTLLAREwlnGEELSGGQWQRIALGRA 579
Cdd:PRK11650 81 VFQNYALYPhMSVRENMAYGlkiRGMPKAEIEERVA-EAARILE--------LEPLLDRK---PRELSGGQRQRVAMGRA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 580 FFRQAGLLVLDEPTANLDprAEYRIFQRL--RDLARdRI---VLLVTH-RITNVAVADRIVVLDEGAVVQEGTYQELARQ 653
Cdd:PRK11650 149 IVREPAVFLFDEPLSNLD--AKLRVQMRLeiQRLHR-RLkttSLYVTHdQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225
|
.
gi 512154901 654 P 654
Cdd:PRK11650 226 P 226
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
303-650 |
6.74e-21 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 98.12 E-value: 6.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 303 MAGFLSGRYRQTVARINREDRAAADKGARMSLAGAACGG--------LGSAIVW-AAVVGLLATGRIS--VGHAGTAVFA 371
Cdd:PLN03232 1096 LNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRwltirletLGGVMIWlTATFAVLRNGNAEnqAGFASTMGLL 1175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 372 LQ---TVGQSVRGLVSIGSRAM-------RTGLYMDDWTRFLDRaggFRMRRGTCRPASPERIEIEAVCHRYAGKGGDAL 441
Cdd:PLN03232 1176 LSytlNITTLLSGVLRQASKAEnslnsveRVGNYIDLPSEATAI---IENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVL 1252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 442 ANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENItl 521
Cdd:PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI-- 1330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 522 gQP-SSRGDTAVREACEAAGADEVVDKLGAGLDtllAREWLNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRA 600
Cdd:PLN03232 1331 -DPfSEHNDADLWEALERAHIKDVIDRNPFGLD---AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 512154901 601 EYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQEL 650
Cdd:PLN03232 1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQEL 1456
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
441-662 |
6.96e-21 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 92.56 E-value: 6.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLskLACGLYL--PTEGRVLWDG-----TPTGD-----ADPHALWQ---HVALVP 505
Cdd:COG4598 24 LKGVSLTARKGDVISIIGSSGSGKSTF--LRCINLLetPDSGEIRVGGeeirlKPDRDgelvpADRRQLQRirtRLGMVF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 506 QDYARWP-LTVRENIT------LGQPssrgdtavREACEAAgADEVVDKLGagldtLLAREWLNGEELSGGQWQRIALGR 578
Cdd:COG4598 102 QSFNLWShMTVLENVIeapvhvLGRP--------KAEAIER-AEALLAKVG-----LADKRDAYPAHLSGGQQQRAAIAR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 579 AFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRItNVA--VADRIVVLDEGAVVQEGTYQELARQP- 654
Cdd:COG4598 168 ALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEEgRTMLVVTHEM-GFArdVSSHVVFLHQGRIEEQGPPAEVFGNPk 246
|
....*....
gi 512154901 655 -GLFRQLLS 662
Cdd:COG4598 247 sERLRQFLS 255
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
424-639 |
8.05e-21 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 89.04 E-value: 8.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgdadphalwqhVAL 503
Cdd:cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVK-----------IGY 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQdyarwpltvrenitlgqpssrgdtavreaceaagadevvdklgagldtllarewlngeeLSGGQWQRIALGRAFFRQ 583
Cdd:cd03221 68 FEQ-----------------------------------------------------------LSGGEKMRLALAKLLLEN 88
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLarDRIVLLVTH-RITNVAVADRIVVLDEG 639
Cdd:cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHdRYFLDQVATKIIELEDG 143
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
430-622 |
8.98e-21 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 91.09 E-value: 8.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 430 CHRyagkGGDAL-ANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAlvPQDY 508
Cdd:PRK13539 10 CVR----GGRVLfSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG--HRNA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 509 ARWPLTVRENIT-----LGQpssrGDTAVREACEAAGADEVVDklgagldtllarewLNGEELSGGQWQRIALGRAFFRQ 583
Cdd:PRK13539 84 MKPALTVAENLEfwaafLGG----EELDIAAALEAVGLAPLAH--------------LPFGYLSAGQKRRVALARLLVSN 145
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 512154901 584 AGLLVLDEPTANLDPRAEyRIFQRL--RDLARDRIVLLVTH 622
Cdd:PRK13539 146 RPIWILDEPTAALDAAAV-ALFAELirAHLAQGGIVIAATH 185
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
441-656 |
1.22e-20 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 91.92 E-value: 1.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLskLAC--GLyLPTEGRVLWDGTPTGDADPHALWQHVA-LVPQDYARWPLTVRE 517
Cdd:PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTL--LARmaGL-LPGSGSIQFAGQPLEAWSAAELARHRAyLSQQQTPPFAMPVFQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 518 NITLGQPSSrgdtaVREACEAAGADEVVDKLgaGLDTLLARewlNGEELSGGQWQRIALGRAFFR-------QAGLLVLD 590
Cdd:PRK03695 89 YLTLHQPDK-----TRTEAVASALNEVAEAL--GLDDKLGR---SVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 591 EPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNVAV-ADRIVVLDEGAVVQEGTYQELARQPGL 656
Cdd:PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIaVVMSSHDLNHTLRhADRVWLLKQGKLLASGRRDEVLTPENL 226
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
440-642 |
2.06e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 91.30 E-value: 2.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP-TGDADpHALWQHVALVPQDyarwP------ 512
Cdd:COG1101 21 ALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDvTKLPE-YKRAKYIGRVFQD----Pmmgtap 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 513 -LTVRENITL----GQP---SSRGDTAVREACEaagadEVVDKLGAGL-DTLLAREWLngeeLSGGQWQRIALGRAFFRQ 583
Cdd:COG1101 96 sMTIEENLALayrrGKRrglRRGLTKKRRELFR-----ELLATLGLGLeNRLDTKVGL----LSGGQRQALSLLMATLTK 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRI-VLLVTHRITN-VAVADRIVVLDEGAVV 642
Cdd:COG1101 167 PKLLLLDEHTAALDPKTAALVLELTEKIvEENNLtTLMVTHNMEQaLDYGNRLIMMHEGRII 228
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
429-646 |
3.01e-20 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 90.26 E-value: 3.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 429 VCHRYA-GK-GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHA---------- 496
Cdd:PRK11629 11 LCKRYQeGSvQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAkaelrnqklg 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 497 -LWQHVALVPQdyarwpLTVRENITLgqPSSRGDTAVREACEAAgadevVDKLGA-GLDtllAREWLNGEELSGGQWQRI 574
Cdd:PRK11629 91 fIYQFHHLLPD------FTALENVAM--PLLIGKKKPAEINSRA-----LEMLAAvGLE---HRANHRPSELSGGERQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 575 ALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVAVADRIVVLDEGAVVQEGT 646
Cdd:PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQgtAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
440-639 |
3.95e-20 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 94.12 E-value: 3.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYlPT---EGRVLWDGTP--------TGDADPHALWQHVALVPQdy 508
Cdd:TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHgtwDGEIYWSGSPlkasnirdTERAGIVIIHQELTLVPE-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 509 arwpLTVRENITLGQ----PSSR-GDTAVREACEAAGADEVVDKLGAGLDTLlarewlngeELSGGQWQRIALGRAFFRQ 583
Cdd:TIGR02633 93 ----LSVAENIFLGNeitlPGGRmAYNAMYLRAKNLLRELQLDADNVTRPVG---------DYGGGQQQLVEIAKALNKQ 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIV-LLVTHRITNV-AVADRIVVLDEG 639
Cdd:TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVAcVYISHKLNEVkAVCDTICVIRDG 217
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
440-646 |
4.29e-20 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 89.94 E-value: 4.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP-TGDADPHALWQHVALVPQD---YARwpLTV 515
Cdd:PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDiTDWQTAKIMREAVAIVPEGrrvFSR--MTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENITLGqpssrGDTAVREACEaagadEVVDKLGAGLDTLLAREWLNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTAN 595
Cdd:PRK11614 98 EENLAMG-----GFFAERDQFQ-----ERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 512154901 596 LDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA--VADRIVVLDEGAVVQEGT 646
Cdd:PRK11614 168 LAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAlkLADRGYVLENGHVVLEDT 220
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
424-645 |
4.34e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 90.95 E-value: 4.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAgKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:PRK13647 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDY--ARWPLTVRENITLGqPSSRGdtavreaceaAGADEVVDKLGAGLDtlLAREWLNGEE----LSGGQWQRIALG 577
Cdd:PRK13647 84 VFQDPddQVFSSTVWDDVAFG-PVNMG----------LDKDEVERRVEEALK--AVRMWDFRDKppyhLSYGQKKRVAIA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNVAV-ADRIVVLDEGAVVQEG 645
Cdd:PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLhNQGKTVIVATHDVDLAAEwADQVIVLKEGRVLAEG 220
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
441-653 |
4.48e-20 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 90.13 E-value: 4.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGL--YLPTEGRVLWDGTPTGDADPH--AL------WQHVALVPQdyar 510
Cdd:COG0396 16 LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHpkYEVTSGSILLDGEDILELSPDerARagiflaFQYPVEIPG---- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 511 wpLTVRE------NITLGQPSSRGDtAVREACEAagADEVvdklgaGLDTLLAREWLNgEELSGGQWQRIALGRAFFRQA 584
Cdd:COG0396 92 --VSVSNflrtalNARRGEELSARE-FLKLLKEK--MKEL------GLDEDFLDRYVN-EGFSGGEKKRNEILQMLLLEP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 585 GLLVLDEPTANLDP---RAEYRIFQRLRDlaRDRIVLLVTH--RITNVAVADRIVVLDEGAVVQEGTYqELARQ 653
Cdd:COG0396 160 KLAILDETDSGLDIdalRIVAEGVNKLRS--PDRGILIITHyqRILDYIKPDFVHVLVDGRIVKSGGK-ELALE 230
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
440-645 |
6.66e-20 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 89.31 E-value: 6.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG-TPTGDADPHALWQHVALVPQDYARWPLTVREN 518
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGlVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDS 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 519 ITL-----GQPSSRGDTAVREACEAAgadevvdKLGAGLDTLLarewlngEELSGGQWQRIALGRAFFRQAGLLVLDEPT 593
Cdd:cd03267 116 FYLlaaiyDLPPARFKKRLDELSELL-------DLEELLDTPV-------RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 594 ANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:cd03267 182 IGLDVVAQENIRNFLKEYNRERgtTVLLTSHYMKDIeALARRVLVIDKGRLLYDG 236
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
424-650 |
6.98e-20 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 95.19 E-value: 6.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVAL 503
Cdd:PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGI 1317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENitLGQPSSRGDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQ 583
Cdd:PLN03130 1318 IPQAPVLFSGTVRFN--LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE---AGENFSVGQRQLLSLARALLRR 1392
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQEL 650
Cdd:PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENL 1459
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
440-645 |
7.04e-20 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 88.74 E-value: 7.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGdadPHALwqHVALVPQdyarwpLTVRENI 519
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS---LLGL--GGGFNPE------LTGRENI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 T-----LGQpsSRGDTAVREaceaagaDEVVD--KLGAGLDTLLarewlngEELSGGQWQRIALGRAFFRQAGLLVLDEP 592
Cdd:cd03220 106 YlngrlLGL--SRKEIDEKI-------DEIIEfsELGDFIDLPV-------KTYSSGMKARLAFAIATALEPDILLIDEV 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 593 TANLDP----RAEYRIFQRLRDlarDRIVLLVTHRITNV-AVADRIVVLDEGAVVQEG 645
Cdd:cd03220 170 LAVGDAafqeKCQRRLRELLKQ---GKTVILVSHDPSSIkRLCDRALVLEKGKIRFDG 224
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
424-654 |
9.93e-20 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 88.75 E-value: 9.93e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQH-VA 502
Cdd:cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLgIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQD---YARwpLTVRENITLGQPSSRGDTAVREaceaAGADEVVDKLgaGLDTLLARewlNGEELSGGQWQRIALGRA 579
Cdd:cd03218 79 YLPQEasiFRK--LTVEENILAVLEIRGLSKKERE----EKLEELLEEF--HITHLRKS---KASSLSGGERRRVEIARA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 580 FFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVT-HritNV----AVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITdH---NVretlSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
440-631 |
1.21e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 89.07 E-value: 1.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLskLAC----GLYLPT---EGRVLWDGTP--TGDADPHALWQHVALVPQDYAR 510
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTI--LRCfnrlNDLIPGfrvEGKVTFHGKNlyAPDVDPVEVRRRIGMVFQKPNP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 511 WPLTVRENITLGqPSSRG-----DTAVREAC-EAAGADEVVDKLgagldtllaREwlNGEELSGGQWQRIALGRAFFRQA 584
Cdd:PRK14243 103 FPKSIYDNIAYG-ARINGykgdmDELVERSLrQAALWDEVKDKL---------KQ--SGLSLSGGQQQRLCIARAIAVQP 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 512154901 585 GLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA-VAD 631
Cdd:PRK14243 171 EVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAArVSD 218
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
440-646 |
1.30e-19 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 88.60 E-value: 1.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPT-----GdadphalwqhVALVPQdyarwpLT 514
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGRVSallelG----------AGFHPE------LT 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 515 VRENI-----TLGQpsSRGDTAVREaceaagaDEVVD--KLGAGLDTLLARewlngeeLSGGQWQRIALGRAFFRQAGLL 587
Cdd:COG1134 105 GRENIylngrLLGL--SRKEIDEKF-------DEIVEfaELGDFIDQPVKT-------YSSGMRARLAFAVATAVDPDIL 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 588 VLDEPTANLDPRaeyriFQ-----RLRDLARD-RIVLLVTHRITNVA-VADRIVVLDEGAVVQEGT 646
Cdd:COG1134 169 LVDEVLAVGDAA-----FQkkclaRIRELRESgRTVIFVSHSMGAVRrLCDRAIWLEKGRLVMDGD 229
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
435-640 |
1.36e-19 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 87.77 E-value: 1.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 435 GKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgDADPHALWQHVALVPQDYAR---W 511
Cdd:cd03290 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNE-SEPSFEATRSRNRYSVAYAAqkpW 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 512 PL--TVRENITLGQPSSRGD-TAVREACEAagaDEVVDKLGAGLDTLLAREWLNgeeLSGGQWQRIALGRAFFRQAGLLV 588
Cdd:cd03290 90 LLnaTVEENITFGSPFNKQRyKAVTDACSL---QPDIDLLPFGDQTEIGERGIN---LSGGQRQRICVARALYQNTNIVF 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 589 LDEPTANLDPRAEYRIFQR--LRDLARD-RIVLLVTHRITNVAVADRIVVLDEGA 640
Cdd:cd03290 164 LDDPFSALDIHLSDHLMQEgiLKFLQDDkRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
411-679 |
1.55e-19 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 93.86 E-value: 1.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 411 MRRGTCRPASPERIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTptg 490
Cdd:TIGR00957 624 IERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS--- 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 491 dadphalwqhVALVPQDYARWPLTVRENITLGQP-SSRGDTAVREACeAAGADevVDKLGAGLDTLLAREWLNgeeLSGG 569
Cdd:TIGR00957 701 ----------VAYVPQQAWIQNDSLRENILFGKAlNEKYYQQVLEAC-ALLPD--LEILPSGDRTEIGEKGVN---LSGG 764
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 570 QWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRL---RDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGT 646
Cdd:TIGR00957 765 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVigpEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGS 844
|
250 260 270
....*....|....*....|....*....|....
gi 512154901 647 YQELARQPGLFRQLL-SYQVTSDADDEKQPGPGL 679
Cdd:TIGR00957 845 YQELLQRDGAFAEFLrTYAPDEQQGHLEDSWTAL 878
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
441-656 |
2.00e-19 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 88.69 E-value: 2.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDY-ARWPLTVRENI 519
Cdd:PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLpAAEGMTVRELV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLGQPSSRGDTAVREACEAAGADEVVDKLGAgldTLLAREWLngEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPR 599
Cdd:PRK10575 107 AIGRYPWHGALGRFGAADREKVEEAISLVGL---KPLAHRLV--DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 600 AEYRIFQRLRDLARDR--IVLLVTHRItNVAV--ADRIVVLDEGAVVQEGTYQELARQPGL 656
Cdd:PRK10575 182 HQVDVLALVHRLSQERglTVIAVLHDI-NMAAryCDYLVALRGGEMIAQGTPAELMRGETL 241
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
426-653 |
2.13e-19 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 92.05 E-value: 2.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 426 IEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVlwdgTPTGDAdphalwqHVALVP 505
Cdd:COG0488 1 LENLSKSFGGR--PLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEV----SIPKGL-------RIGYLP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 506 QDYARWP-LTVRENITLGQPSSRGDTAVREACEAAGADEvvDKLGAGLDTLLAR-----EW---------LNG------- 563
Cdd:COG0488 68 QEPPLDDdLTVLDTVLDGDAELRALEAELEELEAKLAEP--DEDLERLAELQEEfealgGWeaearaeeiLSGlgfpeed 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 564 -----EELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDprAEYRIFqrLRDLARDR--IVLLVTH-R--ITNvaVADRI 633
Cdd:COG0488 146 ldrpvSELSGGWRRRVALARALLSEPDLLLLDEPTNHLD--LESIEW--LEEFLKNYpgTVLVVSHdRyfLDR--VATRI 219
|
250 260
....*....|....*....|...
gi 512154901 634 VVLDEGAVVQ-EGTYQ--ELARQ 653
Cdd:COG0488 220 LELDRGKLTLyPGNYSayLEQRA 242
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
419-661 |
2.55e-19 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 88.12 E-value: 2.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 419 ASPERIEIEAVCHRYAGKGgdALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAL- 497
Cdd:PRK11300 1 MSQPLLSVSGLMMRFGGLL--AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 498 -------WQHVALVPQdyarwpLTVRENITLGQ---------------PSSRgdTAVREACEAAGadEVVDKLgaGLDTL 555
Cdd:PRK11300 79 rmgvvrtFQHVRLFRE------MTVIENLLVAQhqqlktglfsgllktPAFR--RAESEALDRAA--TWLERV--GLLEH 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 556 LAREWLNgeeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRaEYRIFQRLRDLARDRI---VLLVTHRITNV-AVAD 631
Cdd:PRK11300 147 ANRQAGN---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPK-ETKELDELIAELRNEHnvtVLLIEHDMKLVmGISD 222
|
250 260 270
....*....|....*....|....*....|
gi 512154901 632 RIVVLDEGAVVQEGTYQELARQPGLFRQLL 661
Cdd:PRK11300 223 RIYVVNQGTPLANGTPEEIRNNPDVIKAYL 252
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
441-644 |
2.61e-19 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 87.53 E-value: 2.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALW----QHVALVPQDYARWP-LTV 515
Cdd:PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAklraKHVGFVFQSFMLIPtLNA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENITLgqPSS-RGDtavREACEAAGADEVVDKLGAG--LDTLLArewlngeELSGGQWQRIALGRAFFRQAGLLVLDEP 592
Cdd:PRK10584 106 LENVEL--PALlRGE---SSRQSRNGAKALLEQLGLGkrLDHLPA-------QLSGGEQQRVALARAFNGRPDVLFADEP 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 512154901 593 TANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVAVADRIVVLDEGAVVQE 644
Cdd:PRK10584 174 TGNLDRQTGDKIADLLFSLNREHgtTLILVTHDLQLAARCDRRLRLVNGQLQEE 227
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
441-648 |
4.05e-19 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 86.69 E-value: 4.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLTVRENIT 520
Cdd:PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 521 LgqPSS-RGDTavreaceaagADEvvDKLGAGLDTL-LAREWLNG--EELSGGQWQRIALGRAFFRQAGLLVLDEPTANL 596
Cdd:PRK10247 103 F--PWQiRNQQ----------PDP--AIFLDDLERFaLPDTILTKniAELSGGEKQRISLIRNLQFMPKVLLLDEITSAL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 597 DPRAEYRIFQRLRDLARDR--IVLLVTHRITNVAVADRIVVLD-EGAVVQEGTYQ 648
Cdd:PRK10247 169 DESNKHNVNEIIHRYVREQniAVLWVTHDKDEINHADKVITLQpHAGEMQEARYE 223
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
423-662 |
4.99e-19 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 87.60 E-value: 4.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLyLPTEGRVLWDGTpTGDADPHALWQHV- 501
Cdd:cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGDIQIDGV-SWNSVPLQKWRKAf 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYARWPLTVRENIT-LGQPSsrgDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAF 580
Cdd:cd03289 80 GVIPQKVFIFSGTFRKNLDpYGKWS---DEEIWKVAEEVGLKSVIEQFPGQLDFVLVD---GGCVLSHGHKQLMCLARSV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQL 660
Cdd:cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA 233
|
..
gi 512154901 661 LS 662
Cdd:cd03289 234 IS 235
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
440-650 |
5.23e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 87.87 E-value: 5.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRV----LWDGTPTGDADPHALWQHVALVPQ--DYARWPL 513
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVtvgdIVVSSTSKQKEIKPVRKKVGVVFQfpESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 514 TVRENITLGqPSSRGDTavREACEAAGAdEVVDKLGagldtlLAREWLNGE--ELSGGQWQRIALGRAFFRQAGLLVLDE 591
Cdd:PRK13643 101 TVLKDVAFG-PQNFGIP--KEKAEKIAA-EKLEMVG------LADEFWEKSpfELSGGQMRRVAIAGILAMEPEVLVLDE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 592 PTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNVA-VADRIVVLDEGAVVQEGT----YQEL 650
Cdd:PRK13643 171 PTAGLDPKARIEMMQLFESIHQSgQTVVLVTHLMDDVAdYADYVYLLEKGHIISCGTpsdvFQEV 235
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
441-672 |
5.31e-19 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 91.96 E-value: 5.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTE-GRVLWDGTptgdadphalwqhVALVPQDYARWPLTVRENI 519
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAEtSSVVIRGS-------------VAYVPQVSWIFNATVRENI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLG---QPSSRGdtavrEACEAAGADEVVDkLGAGLDTLLAREwlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANL 596
Cdd:PLN03232 700 LFGsdfESERYW-----RAIDVTALQHDLD-LLPGRDLTEIGE--RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 597 DPRAEYRIFQR-LRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLSYQVTSDADDE 672
Cdd:PLN03232 772 DAHVAHQVFDScMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQE 848
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
417-662 |
6.46e-19 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 90.36 E-value: 6.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 417 RPASPERIEIEAVchryagkGGDALAN-VSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADP- 494
Cdd:PRK11288 251 RPLGEVRLRLDGL-------KGPGLREpISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPr 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 495 HALWQHVALVPQDYAR---WPL-TVRENITLG--QPSSRGDTAVREACEAAGADEVVDKLG---AGLDTLLArewlngeE 565
Cdd:PRK11288 324 DAIRAGIMLCPEDRKAegiIPVhSVADNINISarRHHLRAGCLINNRWEAENADRFIRSLNiktPSREQLIM-------N 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 566 LSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLA-RDRIVLLVTHRITNV-AVADRIVVLDEGAVVq 643
Cdd:PRK11288 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAaQGVAVLFVSSDLPEVlGVADRIVVMREGRIA- 475
|
250
....*....|....*....
gi 512154901 644 egtyQELARQPGLFRQLLS 662
Cdd:PRK11288 476 ----GELAREQATERQALS 490
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
424-649 |
6.52e-19 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 90.51 E-value: 6.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWdGTPTgdadphalwqHVAL 503
Cdd:COG0488 316 LELEGLSKSYGDK--TLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV----------KIGY 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYA--RWPLTVRENITLGQPSSRgDTAVREACEAAG--ADEVVDKLGAgldtllarewlngeeLSGGQWQRIALGRA 579
Cdd:COG0488 383 FDQHQEelDPDKTVLDELRDGAPGGT-EQEVRGYLGRFLfsGDDAFKPVGV---------------LSGGEKARLALAKL 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 580 FFRQAGLLVLDEPTANLDPR---------AEYrifqrlrdlarDRIVLLVTH------RitnvaVADRIVVLDEGAVVQ- 643
Cdd:COG0488 447 LLSPPNVLLLDEPTNHLDIEtlealeealDDF-----------PGTVLLVSHdryfldR-----VATRILEFEDGGVREy 510
|
....*.
gi 512154901 644 EGTYQE 649
Cdd:COG0488 511 PGGYDD 516
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
440-650 |
8.66e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 87.98 E-value: 8.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVlW--------DGTPTGDADPHA---------LWQHVA 502
Cdd:PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI-QvgdiyigdKKNNHELITNPYskkiknfkeLRRRVS 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQ--DYARWPLTVRENITLGqPSSRGDTAVREACEAAgadEVVDKLGAGlDTLLARewlNGEELSGGQWQRIALGRAF 580
Cdd:PRK13631 120 MVFQfpEYQLFKDTIEKDIMFG-PVALGVKKSEAKKLAK---FYLNKMGLD-DSYLER---SPFGLSGGQKRRVAIAGIL 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 581 FRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK13631 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAkANNKTVFVITHTMEHVlEVADEVIVMDKGKILKTGTPYEI 263
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
440-662 |
1.90e-18 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 88.99 E-value: 1.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTlSKLACGLYLPTEGRVLWDGTPTGDADPHALW---QHVALVPQD--YARWP-L 513
Cdd:PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKST-TGLALLRLINSQGEIWFDGQPLHNLNRRQLLpvrHRIQVVFQDpnSSLNPrL 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 514 TVRENITLG----QPSSRGdtAVREACEAAGADEVvdklgaGLDTLLAREWlnGEELSGGQWQRIALGRAFFRQAGLLVL 589
Cdd:PRK15134 380 NVLQIIEEGlrvhQPTLSA--AQREQQVIAVMEEV------GLDPETRHRY--PAEFSGGQRQRIAIARALILKPSLIIL 449
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 590 DEPTANLDPRAEYRIFQRLRDLARDRIV--LLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQPG--LFRQLLS 662
Cdd:PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLayLFISHDLHVVrALCHQVIVLRQGEVVEQGDCERVFAAPQqeYTRQLLA 527
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
440-654 |
2.94e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 84.83 E-value: 2.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLA--CGLYLP---TEGRVLWDG----TPTgdADPHALWQHVALVPQDYAR 510
Cdd:PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLNPevtITGSIVYNGhniySPR--TDTVDLRKEIGMVFQQPNP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 511 WPLTVRENITLG------QPSSRGDTAVREACEAAGA-DEVVDKLGaglDTLLArewlngeeLSGGQWQRIALGRAFFRQ 583
Cdd:PRK14239 98 FPMSIYENVVYGlrlkgiKDKQVLDEAVEKSLKGASIwDEVKDRLH---DSALG--------LSGGQQQRVCIARVLATS 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK14239 167 PKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASrISDRTGFFLDGDLIEYNDTKQMFMNP 238
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
422-639 |
3.38e-18 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 88.49 E-value: 3.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 422 ERIEIEAVCHRYaGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHV 501
Cdd:PRK10522 321 QTLELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPQDYarWPLTVreniTLGQPSsrgdtavrEACEAAGADEVVDKLGAGLDTLLAREWLNGEELSGGQWQRIALGRAFF 581
Cdd:PRK10522 400 SAVFTDF--HLFDQ----LLGPEG--------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALA 465
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 582 RQAGLLVLDEPTANLDPRAEyRIF-QRLRDLARD--RIVLLVTHRITNVAVADRIVVLDEG 639
Cdd:PRK10522 466 EERDILLLDEWAADQDPHFR-REFyQVLLPLLQEmgKTIFAISHDDHYFIHADRLLEMRNG 525
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
440-653 |
3.98e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 85.22 E-value: 3.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG----TPTGDADPHALWQHVALVPQ--DYARWPL 513
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDititHKTKDKYIRPVRKRIGMVFQfpESQLFED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 514 TVRENITLGQPSSRGDtaVREAceAAGADEVVDKLGAGLDTLLAREWlngeELSGGQWQRIALGRAFFRQAGLLVLDEPT 593
Cdd:PRK13646 102 TVEREIIFGPKNFKMN--LDEV--KNYAHRLLMDLGFSRDVMSQSPF----QMSGGQMRKIAIVSILAMNPDIIVLDEPT 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 594 ANLDPRAEYRIFQRLRDLARD--RIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQ 653
Cdd:PRK13646 174 AGLDPQSKRQVMRLLKSLQTDenKTIILVSHDMNEVArYADEVIVMKEGSIVSQTSPKELFKD 236
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
436-622 |
4.38e-18 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 82.93 E-value: 4.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 436 KGGDAL-ANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWPLT 514
Cdd:cd03231 10 RDGRALfSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 515 VRENITLGQPSSrGDTAVREACEAAGadevvdklgagldtLLAREWLNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTA 594
Cdd:cd03231 90 VLENLRFWHADH-SDEQVEEALARVG--------------LNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154
|
170 180
....*....|....*....|....*....
gi 512154901 595 NLDPRAEYRIFQRLRD-LARDRIVLLVTH 622
Cdd:cd03231 155 ALDKAGVARFAEAMAGhCARGGMVVLTTH 183
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
441-661 |
4.68e-18 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 89.03 E-value: 4.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTE-GRVLWDGTptgdadphalwqhVALVPQDYARWPLTVRENI 519
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSdASVVIRGT-------------VAYVPQVSWIFNATVRDNI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLGQP--SSRGDTAVReaceAAGADEVVDKLGAGLDTLLAREWLNgeeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLD 597
Cdd:PLN03130 700 LFGSPfdPERYERAID----VTALQHDLDLLPGGDLTEIGERGVN---ISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 598 PRAEYRIFQR-LRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLL 661
Cdd:PLN03130 773 AHVGRQVFDKcIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLM 837
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
440-643 |
6.55e-18 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 87.15 E-value: 6.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYlPT---EGRVLWDGTPTGDADPHA--------LWQHVALVPQdy 508
Cdd:NF040905 16 ALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVY-PHgsyEGEILFDGEVCRFKDIRDsealgiviIHQELALIPY-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 509 arwpLTVRENITLG-QPSSRG-----DTAVReaceaagADEVVDKLgaGL----DTLLArewlngeELSGGQWQRIALGR 578
Cdd:NF040905 93 ----LSIAENIFLGnERAKRGvidwnETNRR-------ARELLAKV--GLdespDTLVT-------DIGVGKQQLVEIAK 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 579 AFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIV-LLVTHRITNVA-VADRIVVLDEGAVVQ 643
Cdd:NF040905 153 ALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITsIIISHKLNEIRrVADSITVLRDGRTIE 219
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
441-645 |
7.80e-18 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 82.21 E-value: 7.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTL-SKLACGL-YLPTEGRVLWDGTPTgdaDPHALWQHVALVPQDYARWP-LTVRE 517
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLlNALAGRRtGLGVSGEVLINGRPL---DKRSFRKIIGYVPQDDILHPtLTVRE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 518 NITLgqpssrgdtavreaceAAGadevvdklgagldtllarewLNGeeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLD 597
Cdd:cd03213 102 TLMF----------------AAK--------------------LRG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 512154901 598 PRAEYRIFQRLRDLARD-RIVLLVTHRITN--VAVADRIVVLDEGAVVQEG 645
Cdd:cd03213 144 SSSALQVMSLLRRLADTgRTIICSIHQPSSeiFELFDKLLLLSQGRVIYFG 194
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
440-653 |
8.73e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 87.17 E-value: 8.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVL------W-DGTPTGDADPHALWQHVALVPQDYARWP 512
Cdd:TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNvrvgdeWvDMTKPGPDGRGRAKRYIGILHQEYDLYP 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 513 -LTVRENIT----LGQPSsrgDTAVREAceaagadeVVDKLGAGLDTLLAREWLNG--EELSGGQWQRIALGRAFFRQAG 585
Cdd:TIGR03269 379 hRTVLDNLTeaigLELPD---ELARMKA--------VITLKMVGFDEEKAEEILDKypDELSEGERHRVALAQVLIKEPR 447
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 586 LLVLDEPTANLDPRAEYRIFQRLRDlARDRI---VLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQ 653
Cdd:TIGR03269 448 IVILDEPTGTMDPITKVDVTHSILK-AREEMeqtFIIVSHDMDFVlDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
441-650 |
8.96e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 84.01 E-value: 8.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQ--DYARWPLTVREN 518
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQnpDNQFVGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 519 ITLGQ-----PSSRGDTAVREACEAAGADEVVDKLGAgldtllarewlngeELSGGQWQRIALGRAFFRQAGLLVLDEPT 593
Cdd:PRK13650 103 VAFGLenkgiPHEEMKERVNEALELVGMQDFKEREPA--------------RLSGGQKQRVAIAGAVAMRPKIIILDEAT 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 594 ANLDPRAEYRIFQRLRDLaRDR---IVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK13650 169 SMLDPEGRLELIKTIKGI-RDDyqmTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
437-645 |
1.07e-17 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 83.78 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALwqhVALVPQ----DYArWP 512
Cdd:PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL---VAYVPQseevDWS-FP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 513 LTVRENITLGQPSSRGdtAVREAceAAGADEVVDKLGAGLDTLLAREWLNGEeLSGGQWQRIALGRAFFRQAGLLVLDEP 592
Cdd:PRK15056 95 VLVEDVVMMGRYGHMG--WLRRA--KKRDRQIVTAALARVDMVEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEP 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 593 TANLDPRAEYRIFQRLRDLaRD--RIVLLVTHRITNVAVADRIVVLDEGAVVQEG 645
Cdd:PRK15056 170 FTGVDVKTEARIISLLREL-RDegKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
421-636 |
1.56e-17 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 86.40 E-value: 1.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 421 PERIEIEAVcHRYaGKGGDALANVSlTLRRGEVTALVGYNGSGKSTLSKLACGLYLP----TEGRVLWD-------GTpt 489
Cdd:PRK13409 72 PEELEEEPV-HRY-GVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPnlgdYEEEPSWDevlkrfrGT-- 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 490 gdadphALWQH----------VALVPQ--DYARWPL--TVREnitlgqpssrgdtAVREACEAAGADEVVDKLGagLDTL 555
Cdd:PRK13409 147 ------ELQNYfkklyngeikVVHKPQyvDLIPKVFkgKVRE-------------LLKKVDERGKLDEVVERLG--LENI 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 556 LAREWlngEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDpraeyrIFQRL------RDLARDRIVLLVTHRITNV-A 628
Cdd:PRK13409 206 LDRDI---SELSGGELQRVAIAAALLRDADFYFFDEPTSYLD------IRQRLnvarliRELAEGKYVLVVEHDLAVLdY 276
|
....*...
gi 512154901 629 VADRIVVL 636
Cdd:PRK13409 277 LADNVHIA 284
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
424-650 |
1.62e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 83.22 E-value: 1.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGG-DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVA 502
Cdd:PRK13642 5 LEVENLVFKYEKESDvNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQ--DYARWPLTVRENITLGQPSsrgdtavreacEAAGADEVVDKLGAGLDTLLAREWLNGE--ELSGGQWQRIALGR 578
Cdd:PRK13642 85 MVFQnpDNQFVGATVEDDVAFGMEN-----------QGIPREEMIKRVDEALLAVNMLDFKTREpaRLSGGQKQRVAVAG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 579 AFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLaRDR---IVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK13642 154 IIALRPEIIILDESTSMLDPTGRQEIMRVIHEI-KEKyqlTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
440-682 |
1.66e-17 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 85.08 E-value: 1.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQ----HVALVPQDYARWP-LT 514
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREvrrkKIAMVFQSFALMPhMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 515 VRENITLGQpssrgdtavreacEAAG--ADEVVDKLGAGLDTLLAREWLNG--EELSGGQWQRIALGRAFFRQAGLLVLD 590
Cdd:PRK10070 123 VLDNTAFGM-------------ELAGinAEERREKALDALRQVGLENYAHSypDELSGGMRQRVGLARALAINPDILLMD 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 591 EPTANLDPRAEYRIFQRLRDL--ARDRIVLLVTHRITN-VAVADRIVVLDEGAVVQEGTYQELARQPG------LFRQLL 661
Cdd:PRK10070 190 EAFSALDPLIRTEMQDELVKLqaKHQRTIVFISHDLDEaMRIGDRIAIMQNGEVVQVGTPDEILNNPAndyvrtFFRGVD 269
|
250 260
....*....|....*....|.
gi 512154901 662 SYQVTSDADDEKQPGPGLRRR 682
Cdd:PRK10070 270 ISQVFSAKDIARRTPNGLIRK 290
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
424-650 |
1.72e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 86.01 E-value: 1.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGL--YLPTEGRVL----------WDGTPTGD 491
Cdd:TIGR03269 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIyhvalcekcgYVERPSKV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 492 ADPHALWQHvALVPQDYARWPL--------------------------TVRENI--TLGQPSSRGDTAVREACEAAgaDE 543
Cdd:TIGR03269 79 GEPCPVCGG-TLEPEEVDFWNLsdklrrrirkriaimlqrtfalygddTVLDNVleALEEIGYEGKEAVGRAVDLI--EM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 544 VvdKLGAGLdTLLAREwlngeeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR-IVLLVTH 622
Cdd:TIGR03269 156 V--QLSHRI-THIARD------LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASgISMVLTS 226
|
250 260 270
....*....|....*....|....*....|
gi 512154901 623 RITNVA--VADRIVVLDEGAVVQEGTYQEL 650
Cdd:TIGR03269 227 HWPEVIedLSDKAIWLENGEIKEEGTPDEV 256
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
441-654 |
1.97e-17 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 87.14 E-value: 1.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDgtptgdadphalwQHVALVPQDYARWPLTVRENIT 520
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNIL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 521 LGQPSSRGDTAVREACEAAGADevVDKLGAGLDTLLAREWLNgeeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRA 600
Cdd:PTZ00243 743 FFDEEDAARLADAVRVSQLEAD--LAQLGGGLETEIGEKGVN---LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 601 EYRIFQ-----RLRDLARdrivLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PTZ00243 818 GERVVEecflgALAGKTR----VLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS 872
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
441-656 |
2.81e-17 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 82.36 E-value: 2.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH--ALWQHVALVPQDyarwPltvREN 518
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGllALRQQVATVFQD----P---EQQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 519 ITLGQPSSrgDTAVREACEAAGADEVVDKLGAGLDTLLAREWLNG--EELSGGQWQRIALGRAFFRQAGLLVLDEPTANL 596
Cdd:PRK13638 90 IFYTDIDS--DIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQpiQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 597 DPRAEYRIFQRLRDL-ARDRIVLLVTHRITNV-AVADRIVVLDEGAVVQEG------TYQELARQPGL 656
Cdd:PRK13638 168 DPAGRTQMIAIIRRIvAQGNHVIISSHDIDLIyEISDAVYVLRQGQILTHGapgevfACTEAMEQAGL 235
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
443-636 |
2.84e-17 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 86.62 E-value: 2.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDgtptgdaDPHAL-------WQ-HVALVPQDYARWPLT 514
Cdd:PTZ00265 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN-------DSHNLkdinlkwWRsKIGVVSQDPLLFSNS 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 515 VRENITLGQPS-----------------SRGDTAVREACEAAGA---------------------------DEVVD---- 546
Cdd:PTZ00265 476 IKNNIKYSLYSlkdlealsnyynedgndSQENKNKRNSCRAKCAgdlndmsnttdsneliemrknyqtikdSEVVDvskk 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 547 --------KLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLA--RDRI 616
Cdd:PTZ00265 556 vlihdfvsALPDKYETLVGS---NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKgnENRI 632
|
250 260
....*....|....*....|
gi 512154901 617 VLLVTHRITNVAVADRIVVL 636
Cdd:PTZ00265 633 TIIIAHRLSTIRYANTIFVL 652
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
421-640 |
3.47e-17 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 81.33 E-value: 3.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 421 PERIEIEAVC-----HRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVL--WDGTPT--GD 491
Cdd:COG4778 2 TTLLEVENLSktftlHLQGGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILvrHDGGWVdlAQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 492 ADPHALwqhvalvpqdyarwpLTVRENiTLGQPS---------SRGDTaVREACEAAGADEVVDKLGAGldTLLARewLN 562
Cdd:COG4778 82 ASPREI---------------LALRRR-TIGYVSqflrviprvSALDV-VAEPLLERGVDREEARARAR--ELLAR--LN 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 563 -GEEL--------SGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNV-AVAD 631
Cdd:COG4778 141 lPERLwdlppatfSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAkARGTAIIGIFHDEEVReAVAD 220
|
....*....
gi 512154901 632 RIVVLDEGA 640
Cdd:COG4778 221 RVVDVTPFS 229
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
432-662 |
7.69e-17 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 85.35 E-value: 7.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 432 RYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLyLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARW 511
Cdd:TIGR01271 1226 KYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIF 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 512 PLTVRENItlgQPSSR-GDTAVREACEAAGADEVVDKLGAGLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLD 590
Cdd:TIGR01271 1305 SGTFRKNL---DPYEQwSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD---GGYVLSNGHKQLMCLARSILSKAKILLLD 1378
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 591 EPTANLDPrAEYRIFQR-LRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQELARQPGLFRQLLS 662
Cdd:TIGR01271 1379 EPSAHLDP-VTLQIIRKtLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMS 1450
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
420-660 |
8.16e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 82.06 E-value: 8.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 420 SPERIEIEAVchryagkggdalANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGtptgdadphalwq 499
Cdd:COG4586 29 RREYREVEAV------------DDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLG------------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 500 hvaLVPQ----DYAR-------------WPLTVRENITL-----GQPSSRGDTAVreaceaagaDEVVDKLgaGLDTLL- 556
Cdd:COG4586 84 ---YVPFkrrkEFARrigvvfgqrsqlwWDLPAIDSFRLlkaiyRIPDAEYKKRL---------DELVELL--DLGELLd 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 557 --ARewlngeELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNV-AVAD 631
Cdd:COG4586 150 tpVR------QLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERgtTILLTSHDMDDIeALCD 223
|
250 260
....*....|....*....|....*....
gi 512154901 632 RIVVLDEGAVVQEGTYQELARQPGLFRQL 660
Cdd:COG4586 224 RVIVIDHGRIIYDGSLEELKERFGPYKTI 252
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
424-639 |
9.12e-17 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 79.92 E-value: 9.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGkGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG---TPTGDADPHALWQH 500
Cdd:PRK10908 2 IRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGhdiTRLKNREVPFLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 501 VALVPQD-YARWPLTVRENItlgqpssrgdtAVREACEAAGADEVVDKLGAGLDT--LLAREWLNGEELSGGQWQRIALG 577
Cdd:PRK10908 81 IGMIFQDhHLLMDRTVYDNV-----------AIPLIIAGASGDDIRRRVSAALDKvgLLDKAKNFPIQLSGGEQQRVGIA 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 578 RAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNVAVAD-RIVVLDEG 639
Cdd:PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVtVLMATHDIGLISRRSyRMLTLSDG 213
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
434-646 |
9.80e-17 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 81.03 E-value: 9.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 434 AGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSK-LA---CGLYLP----TEGRVLWDGTPTGDADPHALWQHVALVP 505
Cdd:PRK13547 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKaLAgdlTGGGAPrgarVTGDVTLNGEPLAAIDAPRLARLRAVLP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 506 QDYAR-WPLTVRENITLGQ-PSSR--GDTAVREACEAAGADEVvdklgAGLDTLLAREWLNgeeLSGGQWQRIALGRAF- 580
Cdd:PRK13547 90 QAAQPaFAFSAREIVLLGRyPHARraGALTHRDGEIAWQALAL-----AGATALVGRDVTT---LSGGELARVQFARVLa 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 581 --------FRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RI-VLLVTHRItNVAV--ADRIVVLDEGAVVQEGT 646
Cdd:PRK13547 162 qlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDwNLgVLAIVHDP-NLAArhADRIAMLADGAIVAHGA 238
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
443-622 |
1.04e-16 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 79.08 E-value: 1.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP--TGDADPHA--LW-QHVALVPQDyarwpLTVRE 517
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPirRQRDEYHQdlLYlGHQPGIKTE-----LTALE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 518 NITLGQPSSR--GDTAVREACEAAGadevvdklgagldtLLAREWLNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTAN 595
Cdd:PRK13538 94 NLRFYQRLHGpgDDEALWEALAQVG--------------LAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159
|
170 180
....*....|....*....|....*...
gi 512154901 596 LDPRAEYRIFQRLRD-LARDRIVLLVTH 622
Cdd:PRK13538 160 IDKQGVARLEALLAQhAEQGGMVILTTH 187
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
440-653 |
2.00e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 82.52 E-value: 2.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH--------ALWQHVALVPQdyarw 511
Cdd:PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKlaaqlgigIIYQELSVIDE----- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 512 pLTVRENITLGQPSSR---GDTAVREACEAAGADEVVDKLG--AGLDTLLArewlngeELSGGQWQRIALGRAFFRQAGL 586
Cdd:PRK09700 95 -LTVLENLYIGRHLTKkvcGVNIIDWREMRVRAAMMLLRVGlkVDLDEKVA-------NLSISHKQMLEIAKTLMLDAKV 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 587 LVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQ 653
Cdd:PRK09700 167 IIMDEPTSSLTNKEVDYLFLIMNQLRKEgTAIVYISHKLAEIrRICDRYTVMKDGSSVCSGMVSDVSND 235
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
440-650 |
2.26e-16 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 79.67 E-value: 2.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLY----------------LPTEGRVLWDgTPTGDADPHALWQHVAL 503
Cdd:PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdksagshiellgrtVQREGRLARD-IRKSRANTGYIFQQFNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQdyarwpLTVRENITLGqpsSRGDTAVREAC-------EAAGADEVVDKLGAgldTLLAREWLNgeELSGGQWQRIAL 576
Cdd:PRK09984 98 VNR------LSVLENVLIG---ALGSTPFWRTCfswftreQKQRALQALTRVGM---VHFAHQRVS--TLSGGQQQRVAI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR-DRIVLLVTHRITNVAV--ADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK09984 164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDINQnDGITVVVTLHQVDYALryCERIVALRQGHVFYDGSSQQF 240
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
440-651 |
3.18e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 80.13 E-value: 3.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLW------DGTPTGDADPH------------------ 495
Cdd:PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWifkdekNKKKTKEKEKVleklviqktrfkkikkik 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 496 ALWQHVALVPQdYARWPL---TVRENITLGqPSSRGdTAVREACE-AAGADEVVdklgaGLD-TLLARewlNGEELSGGQ 570
Cdd:PRK13651 102 EIRRRVGVVFQ-FAEYQLfeqTIEKDIIFG-PVSMG-VSKEEAKKrAAKYIELV-----GLDeSYLQR---SPFELSGGQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 571 WQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVLDEGAVVQEG-TY 647
Cdd:PRK13651 171 KRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQgKTIILVTHDLDNVlEWTKRTIFFKDGKIIKDGdTY 250
|
....
gi 512154901 648 QELA 651
Cdd:PRK13651 251 DILS 254
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
443-641 |
5.79e-16 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 81.02 E-value: 5.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPT-EGRVLWDGTPTGDADP-HALWQHVALVPQDYARW----PLTVR 516
Cdd:TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRNPaQAIRAGIAMVPEDRKRHgivpILGVG 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 517 ENITLgqpSSRGDTAVREACEAAGADEVVDKLGAGLDTLLAREWLNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANL 596
Cdd:TIGR02633 358 KNITL---SVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 512154901 597 DPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAV 641
Cdd:TIGR02633 435 DVGAKYEIYKLINQLAQEGVaIIVVSSELAEVlGLSDRVLVIGEGKL 481
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
441-653 |
6.98e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 76.80 E-value: 6.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGL--YLPTEGRVLWDGTPTGDADPHalwqhvalvpqdyarwpLTVREN 518
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPE-----------------ERARLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 519 ITLGQPSSrgdtavreaceaagadevVDKLGAGLDTLLaREwLNgEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDP 598
Cdd:cd03217 79 IFLAFQYP------------------PEIPGVKNADFL-RY-VN-EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 599 ---RAEYRIFQRLRDlaRDRIVLLVTH--RITNVAVADRIVVLDEGAVVQEGTyQELARQ 653
Cdd:cd03217 138 dalRLVAEVINKLRE--EGKSVLIITHyqRLLDYIKPDRVHVLYDGRIVKSGD-KELALE 194
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
438-649 |
8.23e-16 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 79.53 E-value: 8.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 438 GDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDAD------PHAlwQHVALVPQDyAR- 510
Cdd:PRK11144 11 GDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEkgiclpPEK--RRIGYVFQD-ARl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 511 WP-LTVRENITLGQPSSRgdtavreaceAAGADEVVDKLGagLDTLLAREWLNgeeLSGGQWQRIALGRAFFRQAGLLVL 589
Cdd:PRK11144 88 FPhYKVRGNLRYGMAKSM----------VAQFDKIVALLG--IEPLLDRYPGS---LSGGEKQRVAIGRALLTAPELLLM 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 590 DEPTANLD-PRAEyRIFQRLRDLARD-RI-VLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQE 649
Cdd:PRK11144 153 DEPLASLDlPRKR-ELLPYLERLAREiNIpILYVSHSLDEIlRLADRVVVLEQGKVKAFGPLEE 215
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
424-639 |
8.64e-16 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 77.82 E-value: 8.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGD--ADPHALWQHV 501
Cdd:PRK11248 2 LQISHLYADYGGK--PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGpgAERGVVFQNE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 502 ALVPqdyarWpLTVRENITLGQPSSRGDTAVREAcEAAGADEVVDKLGAGldtlLAREWlngeELSGGQWQRIALGRAFF 581
Cdd:PRK11248 80 GLLP-----W-RNVQDNVAFGLQLAGVEKMQRLE-IAHQMLKKVGLEGAE----KRYIW----QLSGGQRQRVGIARALA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 582 RQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRITN-VAVADRIVVLDEG 639
Cdd:PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQEtgKQVLLITHDIEEaVFMATELVLLSPG 205
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
441-654 |
8.80e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 77.57 E-value: 8.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLY-LPTEGRVLWDGTPTG------DADPHALWQHVALVPQDYARWP- 512
Cdd:PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLeLNEEARVEGEVRLFGrniyspDVDPIEVRREVGMVFQYPNPFPh 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 513 LTVRENITLG-------QPSSRGDTAVREACE-AAGADEVVDKLGAgldtllarewlNGEELSGGQWQRIALGRAFFRQA 584
Cdd:PRK14267 100 LTIYDNVAIGvklnglvKSKKELDERVEWALKkAALWDEVKDRLND-----------YPSNLSGGQRQRLVIARALAMKP 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 585 GLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK14267 169 KILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAArVSDYVAFLYLGKLIEVGPTRKVFENP 239
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
437-650 |
1.13e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 80.43 E-value: 1.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHA--------LWQHVALVPQdy 508
Cdd:PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSsqeagigiIHQELNLIPQ-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 509 arwpLTVRENITLGqpssrgdtavREACEAAGAdevVD--KLGAGLDTLLARewLNGE--------ELSGGQWQRIALGR 578
Cdd:PRK10762 94 ----LTIAENIFLG----------REFVNRFGR---IDwkKMYAEADKLLAR--LNLRfssdklvgELSIGEQQMVEIAK 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 579 AFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDL-ARDRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELkSQGRGIVYISHRLKEIfEICDDVTVFRDGQFIAEREVADL 228
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
440-654 |
1.54e-15 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 78.21 E-value: 1.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG---TPTGDADPHALWQHVALVPQDyarwPL-TV 515
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGkdlLGMKDDEWRAVRSDIQMIFQD----PLaSL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENITLG----------QPS-SRGDtaVREACEAagadeVVDKLGAgLDTLLAREwlnGEELSGGQWQRIALGRAFFRQA 584
Cdd:PRK15079 112 NPRMTIGeiiaeplrtyHPKlSRQE--VKDRVKA-----MMLKVGL-LPNLINRY---PHEFSGGQCQRIGIARALILEP 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 585 GLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLV--THRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK15079 181 KLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIfiAHDLAVVKhISDRVLVMYLGHAVELGTYDEVYHNP 253
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
421-636 |
2.50e-15 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 79.44 E-value: 2.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 421 PERIEIEAVcHRYaGKGGDALANVSlTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVL----WD-------GTPT 489
Cdd:COG1245 72 PEELEEDPV-HRY-GENGFRLYGLP-VPKKGKVTGILGPNGIGKSTALKILSGELKPNLGDYDeepsWDevlkrfrGTEL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 490 GD-----AD--------PhalwQHVALVPQdyaRWPLTVREniTLGQPSSRGDtavreaceaagADEVVDKLGagLDTLL 556
Cdd:COG1245 149 QDyfkklANgeikvahkP----QYVDLIPK---VFKGTVRE--LLEKVDERGK-----------LDELAEKLG--LENIL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 557 AREWlngEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDpraeyrIFQRL------RDLAR-DRIVLLVTHRITNV-A 628
Cdd:COG1245 207 DRDI---SELSGGELQRVAIAAALLRDADFYFFDEPSSYLD------IYQRLnvarliRELAEeGKYVLVVEHDLAILdY 277
|
....*...
gi 512154901 629 VADRIVVL 636
Cdd:COG1245 278 LADYVHIL 285
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
417-661 |
3.40e-15 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 79.82 E-value: 3.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 417 RPASPERIEIEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKL------ACGlylpteGRVLWDGTPTG 490
Cdd:PTZ00243 1302 HPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTfmrmveVCG------GEIRVNGREIG 1375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 491 DADPHALWQHVALVPQDYARWPLTVRENItlgQPSSRGDTA-VREACEAAGADEVVDKLGAGLDtllAREWLNGEELSGG 569
Cdd:PTZ00243 1376 AYGLRELRRQFSMIPQDPVLFDGTVRQNV---DPFLEASSAeVWAALELVGLRERVASESEGID---SRVLEGGSNYSVG 1449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 570 QWQRIALGRAFF-RQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQ 648
Cdd:PTZ00243 1450 QRQLMCMARALLkKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPR 1529
|
250
....*....|....
gi 512154901 649 ELARQP-GLFRQLL 661
Cdd:PTZ00243 1530 ELVMNRqSIFHSMV 1543
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
437-646 |
5.36e-15 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 79.29 E-value: 5.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgDADPHALWQHVALVPQDYARWP-LTV 515
Cdd:TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGMCPQHNILFHhLTV 1020
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENITL-GQPSSRGDTAVREACEAAGADevvdklgAGLDTLLAREwlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTA 594
Cdd:TIGR01257 1021 AEHILFyAQLKGRSWEEAQLEMEAMLED-------TGLHHKRNEE---AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTS 1090
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 512154901 595 NLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAV-ADRIVVLDEGAVVQEGT 646
Cdd:TIGR01257 1091 GVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLlGDRIAIISQGRLYCSGT 1143
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
423-654 |
5.39e-15 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 75.07 E-value: 5.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 423 RIEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGtptgdadphalwqhva 502
Cdd:COG1137 3 TLEAENLVKSYGKR--TVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDG---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 lvpQDYARWP---------------------LTVRENItlgqpssrgdTAVREACE--AAGADEVVDKLgagLDTL---- 555
Cdd:COG1137 65 ---EDITHLPmhkrarlgigylpqeasifrkLTVEDNI----------LAVLELRKlsKKEREERLEEL---LEEFgith 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 556 LAREwlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIfQRL-RDLARDRIVLLVT-HritNV----AV 629
Cdd:COG1137 129 LRKS--KAYSLSGGERRRVEIARALATNPKFILLDEPFAGVDPIAVADI-QKIiRHLKERGIGVLITdH---NVretlGI 202
|
250 260
....*....|....*....|....*
gi 512154901 630 ADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:COG1137 203 CDRAYIISEGKVLAEGTPEEILNNP 227
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
443-649 |
6.27e-15 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 78.05 E-value: 6.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYlP--TEGRVLWDGTPTGDADP-HALWQHVALVPQDYARW---P-LTV 515
Cdd:PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PgrWEGEIFIDGKPVKIRNPqQAIAQGIAMVPEDRKRDgivPvMGV 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENITLG--QPSSRGdTAVREACEAAGADEVVDKL---GAGLDTLLARewlngeeLSGGQWQRIALGRAFFRQAGLLVLD 590
Cdd:PRK13549 359 GKNITLAalDRFTGG-SRIDDAAELKTILESIQRLkvkTASPELAIAR-------LSGGNQQKAVLAKCLLLNPKILILD 430
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 591 EPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEGAV----VQEGTYQE 649
Cdd:PRK13549 431 EPTRGIDVGAKYEIYKLINQLVQQGVaIIVISSELPEVlGLSDRVLVMHEGKLkgdlINHNLTQE 495
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
441-622 |
7.29e-15 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 74.77 E-value: 7.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLwdgtptgdaDPHALwqHVALVPQDY---ARWPLTVRE 517
Cdd:PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---------RNGKL--RIGYVPQKLyldTTLPLTVNR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 518 NITLGQPSSRGDtavreaceaagadevvdkLGAGLDTLLAREWLNG--EELSGGQWQRIALGRAFFRQAGLLVLDEPTAN 595
Cdd:PRK09544 89 FLRLRPGTKKED------------------ILPALKRVQAGHLIDApmQKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150
|
170 180
....*....|....*....|....*....
gi 512154901 596 LDPRAEYRIFQRLRDLAR--DRIVLLVTH 622
Cdd:PRK09544 151 VDVNGQVALYDLIDQLRRelDCAVLMVSH 179
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
441-637 |
1.23e-14 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 72.19 E-value: 1.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVlwdGTPTGDadphalwqHVALVPQdyarwpltvrenit 520
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI---GMPEGE--------DLLFLPQ-------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 521 lgQPssrgdtavreaceaagadevvdKLGAG-LDTLLAREWlnGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPR 599
Cdd:cd03223 72 --RP----------------------YLPLGtLREQLIYPW--DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125
|
170 180 190
....*....|....*....|....*....|....*....
gi 512154901 600 AEYRIFQRLRD-LArdrIVLLVTHRITNVAVADRIVVLD 637
Cdd:cd03223 126 SEDRLYQLLKElGI---TVISVGHRPSLWKFHDRVLDLD 161
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
447-637 |
1.25e-14 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 77.13 E-value: 1.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 447 TLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTptgdadphalwqhVALVPQ----DYarwPLTVRENITLG 522
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLK-------------ISYKPQyispDY---DGTVEEFLRSA 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 523 QPSSRGDTAVREaceaagadEVVDKLGagLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDprAEY 602
Cdd:COG1245 426 NTDDFGSSYYKT--------EIIKPLG--LEKLLDK---NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD--VEQ 490
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 512154901 603 RI-----FQRLRDlARDRIVLLVTHRITNVA-VADRIVVLD 637
Cdd:COG1245 491 RLavakaIRRFAE-NRGKTAMVVDHDIYLIDyISDRLMVFE 530
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
447-637 |
1.61e-14 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 73.60 E-value: 1.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 447 TLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGtptgdadphalwQHVALVPQDY-ARWPLTVRENITlgqps 525
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL------------DTVSYKPQYIkADYEGTVRDLLS----- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 526 srgdTAVREACEAAG-ADEVVDKLGagLDTLLAREWLngeELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRI 604
Cdd:cd03237 84 ----SITKDFYTHPYfKTEIAKPLQ--IEQILDREVP---ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 512154901 605 FQRLRDLA--RDRIVLLVTHRITNVA-VADRIVVLD 637
Cdd:cd03237 155 SKVIRRFAenNEKTAFVVEHDIIMIDyLADRLIVFE 190
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
441-631 |
1.94e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 72.68 E-value: 1.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgDADPHALWQHVALVPQDYARWP-LTVRENI 519
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI-KKDLCTYQKQLCFVGHRSGINPyLTLRENC 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLGQPSSRGDTAVREACEAAGADEVVDkLGAGLdtllarewlngeeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPR 599
Cdd:PRK13540 96 LYDIHFSPGAVGITELCRLFSLEHLID-YPCGL-------------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL 161
|
170 180 190
....*....|....*....|....*....|...
gi 512154901 600 AEYRIFQRLRD-LARDRIVLLVTHRITNVAVAD 631
Cdd:PRK13540 162 SLLTIITKIQEhRAKGGAVLLTSHQDLPLNKAD 194
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
440-654 |
2.62e-14 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 74.62 E-value: 2.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHA---LWQHVALVPQD-YARwpLTV 515
Cdd:PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAqklLRQKIQIVFQNpYGS--LNP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENI--TLGQPSSRgDTAVREACEAAGADEVVDKLGagldtllarewLNGEE-------LSGGQWQRIALGRAFFRQAGL 586
Cdd:PRK11308 108 RKKVgqILEEPLLI-NTSLSAAERREKALAMMAKVG-----------LRPEHydryphmFSGGQRQRIAIARALMLDPDV 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 587 LVLDEPTANLDPRAEYRIFQRLRDLARDRIV--LLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK11308 176 VVADEPVSALDVSVQAQVLNLMMDLQQELGLsyVFISHDLSVVEhIADEVMVMYLGRCVEKGTKEQIFNNP 246
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
447-637 |
3.64e-14 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 75.62 E-value: 3.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 447 TLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTptgdadphalwqhVALVPQ----DYarwPLTVRENitLG 522
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK-------------ISYKPQyikpDY---DGTVEDL--LR 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 523 QPSSRGDTAVREAceaagadEVVDKLGagLDTLLARewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDprAEY 602
Cdd:PRK13409 423 SITDDLGSSYYKS-------EIIKPLQ--LERLLDK---NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD--VEQ 488
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 512154901 603 RI-----FQRLRDlARDRIVLLVTHRITNVA-VADRIVVLD 637
Cdd:PRK13409 489 RLavakaIRRIAE-EREATALVVDHDIYMIDyISDRLMVFE 528
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
424-654 |
3.96e-14 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 75.49 E-value: 3.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYAGKGGD--ALANVSLTLRRGEVTALVGYNGSGKS--TLSKLacGLyLP-----TEGRVLWDGTPTGDADP 494
Cdd:COG4172 7 LSVEDLSVAFGQGGGTveAVKGVSFDIAAGETLALVGESGSGKSvtALSIL--RL-LPdpaahPSGSILFDGQDLLGLSE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 495 HALWQ----HVALVPQDyarwPLT-----------VRENITLGQPSSRGD--TAVREACEAAGADEVVDKLGAgldtlla 557
Cdd:COG4172 84 RELRRirgnRIAMIFQE----PMTslnplhtigkqIAEVLRLHRGLSGAAarARALELLERVGIPDPERRLDA------- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 558 rewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIV 634
Cdd:COG4172 153 ----YPHQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELgmALLLITHDLGVVRrFADRVA 228
|
250 260
....*....|....*....|
gi 512154901 635 VLDEGAVVQEGTYQELARQP 654
Cdd:COG4172 229 VMRQGEIVEQGPTAELFAAP 248
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
431-645 |
4.16e-14 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 72.65 E-value: 4.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 431 HRYAGkgGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHAL------------W 498
Cdd:PRK11701 14 KLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALseaerrrllrteW 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 499 QHVALVPQDYARWPLTVRENI-----TLGQpssRGDTAVREAceaagadevvdklgagldtllAREWLNGEEL------- 566
Cdd:PRK11701 92 GFVHQHPRDGLRMQVSAGGNIgerlmAVGA---RHYGDIRAT---------------------AGDWLERVEIdaaridd 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 567 -----SGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITnVA--VADRIVVLD 637
Cdd:PRK11701 148 lpttfSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELglAVVIVTHDLA-VArlLAHRLLVMK 226
|
....*...
gi 512154901 638 EGAVVQEG 645
Cdd:PRK11701 227 QGRVVESG 234
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
441-654 |
4.28e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 72.77 E-value: 4.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLY------LPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARWP-L 513
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIeiydskIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPhL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 514 TVRENITL-----GQPSSRGDTAVREAC--EAAGADEVVDKLGAgldtllarewlNGEELSGGQWQRIALGRAFFRQAGL 586
Cdd:PRK14246 106 SIYDNIAYplkshGIKEKREIKKIVEEClrKVGLWKEVYDRLNS-----------PASQLSGGQQQRLTIARALALKPKV 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 587 LVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVArVADYVAFLYNGELVEWGSSNEIFTSP 243
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
439-654 |
4.48e-14 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 72.90 E-value: 4.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 439 DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDYARwPLTVREN 518
Cdd:PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPST-SLNPRQR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 519 I--TLGQPsSRGDTAVREACEAAGADEVVDKLGagldtlLAREWLN--GEELSGGQWQRIALGRAFFRQAGLLVLDEPTA 594
Cdd:PRK15112 106 IsqILDFP-LRLNTDLEPEQREKQIIETLRQVG------LLPDHASyyPHMLAPGQKQRLGLARALILRPKVIIADEALA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 595 NLDPRAEYRIFQRLRDLARDRIV--LLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK15112 179 SLDMSMRSQLINLMLELQEKQGIsyIYVTQHLGMMKhISDQVLVMHQGEVVERGSTADVLASP 241
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
439-649 |
4.96e-14 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 75.53 E-value: 4.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 439 DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQ----HVALVPQDYARWP-L 513
Cdd:PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQlrreHFGFIFQRYHLLShL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 514 TVRENITLGQPSSRGDTAVREaceaAGADEVVDKLGAGldtllAREWLNGEELSGGQWQRIALGRAFFRQAGLLVLDEPT 593
Cdd:PRK10535 102 TAAQNVEVPAVYAGLERKQRL----LRAQELLQRLGLE-----DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 594 ANLDPRAEYRIFQRLRDLaRDR--IVLLVTHRITNVAVADRIVVLDEGAVVQEGTYQE 649
Cdd:PRK10535 173 GALDSHSGEEVMAILHQL-RDRghTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQE 229
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
439-654 |
9.37e-14 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 71.92 E-value: 9.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 439 DALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG---TPTGDADPH----------ALWQHVALVP 505
Cdd:PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGqtiNLVRDKDGQlkvadknqlrLLRTRLTMVF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 506 QDYARWP-LTVRENItLGQPSSRGDTAVREACEAAgaDEVVDKLGagLDTLLAREWlnGEELSGGQWQRIALGRAFFRQA 584
Cdd:PRK10619 99 QHFNLWShMTVLENV-MEAPIQVLGLSKQEARERA--VKYLAKVG--IDERAQGKY--PVHLSGGQQQRVSIARALAMEP 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 585 GLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK10619 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARhVSSHVIFLHQGKIEEEGAPEQLFGNP 243
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
437-639 |
1.18e-13 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 74.00 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTG-DADPHALWQHVALVPQDYAR-WPLT 514
Cdd:PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDfKSSKEALENGISMVHQELNLvLQRS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 515 VRENITLGQPSSRG-----DTAVREaceaagADEVVDKLGAGLDtllAREwlNGEELSGGQWQRIALGRAFFRQAGLLVL 589
Cdd:PRK10982 90 VMDNMWLGRYPTKGmfvdqDKMYRD------TKAIFDELDIDID---PRA--KVATLSVSQMQMIEIAKAFSYNAKIVIM 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 512154901 590 DEPTANLDPRAEYRIFQRLRDLaRDR--IVLLVTHRITNV-AVADRIVVLDEG 639
Cdd:PRK10982 159 DEPTSSLTEKEVNHLFTIIRKL-KERgcGIVYISHKMEEIfQLCDEITILRDG 210
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
431-631 |
2.92e-13 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 70.09 E-value: 2.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 431 HRYagkGGDALANVSL-TLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVL----WD-------GTP---------T 489
Cdd:cd03236 8 HRY---GPNSFKLHRLpVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDdppdWDeildefrGSElqnyftkllE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 490 GDADPHALWQHVALVPQdyarwplTVRENItlGQPSSRGDtavreacEAAGADEVVDKLGagLDTLLARewlNGEELSGG 569
Cdd:cd03236 85 GDVKVIVKPQYVDLIPK-------AVKGKV--GELLKKKD-------ERGKLDELVDQLE--LRHVLDR---NIDQLSGG 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512154901 570 QWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHritNVAVAD 631
Cdd:cd03236 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDdNYVLVVEH---DLAVLD 203
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
417-655 |
7.46e-13 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 72.08 E-value: 7.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 417 RPASPERIEIEAvchryagKG-----GD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPT 489
Cdd:NF033858 258 PADDDDEPAIEA-------RGltmrfGDftAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 490 gDADPHALWQHVALVPQD---YARwpLTVRENITL-----GQPSSRGDTAVREACEAAGADEVVDKLgagldtllarewl 561
Cdd:NF033858 331 -DAGDIATRRRVGYMSQAfslYGE--LTVRQNLELharlfHLPAAEIAARVAEMLERFDLADVADAL------------- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 562 nGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR-DRIVLLV-THRITNVAVADRIVVLDEG 639
Cdd:NF033858 395 -PDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSReDGVTIFIsTHFMNEAERCDRISLMHAG 473
|
250
....*....|....*.
gi 512154901 640 AVVQEGTYQELARQPG 655
Cdd:NF033858 474 RVLASDTPAALVAARG 489
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
433-654 |
1.24e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 68.58 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 433 YAGKggDALANVSLTLRRGEVTALVGYNGSGKSTL--------SKLACGLYlptEGRVLWDGTPTGD-ADPHALWQHVAL 503
Cdd:PRK14271 31 FAGK--TVLDQVSMGFPARAVTSLMGPTGSGKTTFlrtlnrmnDKVSGYRY---SGDVLLGGRSIFNyRDVLEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARWPLTVRENITLG--------QPSSRGDTAVReACEAAGADEVVDKLGaglDTLLarewlngeELSGGQWQRIA 575
Cdd:PRK14271 106 LFQRPNPFPMSIMDNVLAGvrahklvpRKEFRGVAQAR-LTEVGLWDAVKDRLS---DSPF--------RLSGGQQQLLC 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 576 LGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAArISDRAALFFDGRLVEEGPTEQLFSSP 253
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
441-644 |
1.36e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 67.68 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYL--PTEGRVlwdgtptgDADPHALWQHVALVpqdyarwpltvrEN 518
Cdd:COG2401 46 LRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgtPVAGCV--------DVPDNQFGREASLI------------DA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 519 ItlgqpSSRGDT-AVREACEAAGADEVVdklgagldtLLAREWlngEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLD 597
Cdd:COG2401 106 I-----GRKGDFkDAVELLNAVGLSDAV---------LWLRRF---KELSTGQKFRFRLALLLAERPKLLVIDEFCSHLD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 512154901 598 PRAEYRIFQRLRDLARDRIV--LLVTHR--ITNVAVADRIVVLDEGAVVQE 644
Cdd:COG2401 169 RQTAKRVARNLQKLARRAGItlVVATHHydVIDDLQPDLLIFVGYGGVPEE 219
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
441-628 |
1.50e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 68.14 E-value: 1.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLY-----LPTEGRVLWDGTPTGD--ADPHALWQHVALVPQDYARWPL 513
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNeleseVRVEGRVEFFNQNIYErrVNLNRLRRQVSMVHPKPNLFPM 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 514 TVRENITLG------QPSSRGDTAVREACEAAGA-DEVVDKLGAgldtllarewlNGEELSGGQWQRIALGRAFFRQAGL 586
Cdd:PRK14258 103 SVYDNVAYGvkivgwRPKLEIDDIVESALKDADLwDEIKHKIHK-----------SALDLSGGQQQRLCIARALAVKPKV 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 512154901 587 LVLDEPTANLDPRAEYRI---FQRLRdLARDRIVLLVTHRITNVA 628
Cdd:PRK14258 172 LLMDEPCFGLDPIASMKVeslIQSLR-LRSELTMVIVSHNLHQVS 215
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
443-650 |
1.68e-12 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 68.09 E-value: 1.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALWQHVALVPQDyARWP--LTVRENIT 520
Cdd:PRK10253 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQN-ATTPgdITVQELVA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 521 LG----QP-----SSRGDTAVREACEAAGADEVVDKlgaGLDTLlarewlngeelSGGQWQRIALGRAFFRQAGLLVLDE 591
Cdd:PRK10253 104 RGryphQPlftrwRKEDEEAVTKAMQATGITHLADQ---SVDTL-----------SGGQRQRAWIAMVLAQETAIMLLDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 512154901 592 PTANLDPRAEYRIFQRLRDLARDRIVLL--VTHRITNVA-VADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK10253 170 PTTWLDISHQIDLLELLSELNREKGYTLaaVLHDLNQACrYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
434-650 |
1.96e-12 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 67.61 E-value: 1.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 434 AGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDgtptgDADPHALWQH------VALVPQD 507
Cdd:PRK10895 12 AYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID-----DEDISLLPLHararrgIGYLPQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 508 YARWP-----------LTVRENITLGQPSSRGDtavrEACEAAGADEVVDKLgagldtllarewlnGEELSGGQWQRIAL 576
Cdd:PRK10895 87 ASIFRrlsvydnlmavLQIRDDLSAEQREDRAN----ELMEEFHIEHLRDSM--------------GQSLSGGERRRVEI 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEY---RIFQRLRDLARDriVLLVTHRI-TNVAVADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIdikRIIEHLRDSGLG--VLITDHNVrETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
441-660 |
7.80e-12 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 68.54 E-value: 7.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTL-SKLACglYLPT----EGRVLWDGTPTGDADPHALwqhVALVPQDYARWP-LT 514
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLmNALAF--RSPKgvkgSGSVLLNGMPIDAKEMRAI---SAYVQQDDLFIPtLT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 515 VRENITLgQPSSRGDTAVREACEAAGADEVVDKLGAG--LDTLLAREWLNgEELSGGQWQRIALGRAFFRQAGLLVLDEP 592
Cdd:TIGR00955 116 VREHLMF-QAHLRMPRRVTKKEKRERVDEVLQALGLRkcANTRIGVPGRV-KGLSGGERKRLAFASELLTDPPLLFCDEP 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 593 TANLDPRAEYRIFQRLRDLA-RDRIVLLVTHRITN--VAVADRIVVLDEGAVVQEGTYQELARqpgLFRQL 660
Cdd:TIGR00955 194 TSGLDSFMAYSVVQVLKGLAqKGKTIICTIHQPSSelFELFDKIILMAEGRVAYLGSPDQAVP---FFSDL 261
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
438-639 |
8.88e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 68.11 E-value: 8.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 438 GDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH-ALWQHVALVPQDYAR----WP 512
Cdd:PRK10762 265 GPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQdGLANGIVYISEDRKRdglvLG 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 513 LTVRENITLgqpssrgdTAVREACEAAG----ADE---VVDKLGAGLDTLLAREWLNGeELSGGQWQRIALGRAFFRQAG 585
Cdd:PRK10762 345 MSVKENMSL--------TALRYFSRAGGslkhADEqqaVSDFIRLFNIKTPSMEQAIG-LLSGGNQQKVAIARGLMTRPK 415
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 586 LLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEG 639
Cdd:PRK10762 416 VLILDEPTRGVDVGAKKEIYQLINQFKAEGLsIILVSSEMPEVlGMSDRILVMHEG 471
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
440-654 |
8.97e-12 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 66.85 E-value: 8.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLP----TEGRVLWDGTPTGDADPHA----LWQHVALVPQDyarw 511
Cdd:COG4170 22 AVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDnwhvTADRFRWNGIDLLKLSPRErrkiIGREIAMIFQE---- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 512 PLTVRE-NITLGQ------PSS--RGDTAVREACEAAGADEVVDKLGAGLDTLLAREWLNgeELSGGQWQRIALGRAFFR 582
Cdd:COG4170 98 PSSCLDpSAKIGDqlieaiPSWtfKGKWWQRFKWRKKRAIELLHRVGIKDHKDIMNSYPH--ELTEGECQKVMIAMAIAN 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:COG4170 176 QPRLLIADEPTNAMESTTQAQIFRLLARLNQLQgtSILLISHDLESISqWADTITVLYCGQTVESGPTEQILKSP 250
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
433-671 |
6.22e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 66.19 E-value: 6.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 433 YAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTP--TGDADPHalwQHVALVPQ-DYA 509
Cdd:TIGR01257 1947 YSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSilTNISDVH---QNMGYCPQfDAI 2023
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 510 RWPLTVRENITL-----GQPSSRGDTAVREACEAAGADEVVDKLGAgldtllarewlngeELSGGQWQRIALGRAFFRQA 584
Cdd:TIGR01257 2024 DDLLTGREHLYLyarlrGVPAEEIEKVANWSIQSLGLSLYADRLAG--------------TYSGGNKRKLSTAIALIGCP 2089
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 585 GLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQPGlFRQLLS 662
Cdd:TIGR01257 2090 PLVLLDEPTTGMDPQARRMLWNTIVSIIREgRAVVLTSHSMEECeALCTRLAIMVKGAFQCLGTIQHLKSKFG-DGYIVT 2168
|
....*....
gi 512154901 663 YQVTSDADD 671
Cdd:TIGR01257 2169 MKIKSPKDD 2177
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
442-654 |
6.72e-11 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 63.25 E-value: 6.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 442 ANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHALW----------QHVALVPQ----D 507
Cdd:PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYtvrkrmsmlfQSGALFTDmnvfD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 508 YARWPLtvRENITLGQPSSRgdTAVREACEAAGadevvdklgagldtLLAREWLNGEELSGGQWQRIALGRAFFRQAGLL 587
Cdd:PRK11831 104 NVAYPL--REHTQLPAPLLH--STVMMKLEAVG--------------LRGAAKLMPSELSGGMARRAALARAIALEPDLI 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 588 VLDEPTANLDPRAEYRIFQRLRDL--ARDRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK11831 166 MFDEPFVGQDPITMGVLVKLISELnsALGVTCVVVSHDVPEVlSIADHAYIVADKKIVAHGSAQALQANP 235
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
411-644 |
9.18e-11 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 64.81 E-value: 9.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 411 MRRGTCRPASPERIEIEAVCHRYAGKggdaLANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG---T 487
Cdd:PRK09700 253 MKENVSNLAHETVFEVRNVTSRDRKK----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGkdiS 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 488 PTGDADphALWQHVALVPQ---DYARWP-LTVRENITLGQPSSRGDTA-----VREACEAAGADEVVDKLGAGLDTLLAr 558
Cdd:PRK09700 329 PRSPLD--AVKKGMAYITEsrrDNGFFPnFSIAQNMAISRSLKDGGYKgamglFHEVDEQRTAENQRELLALKCHSVNQ- 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 559 ewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVL 636
Cdd:PRK09700 406 ---NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDgKVILMVSSELPEIiTVCDRIAVF 482
|
....*...
gi 512154901 637 DEGAVVQE 644
Cdd:PRK09700 483 CEGRLTQI 490
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
439-654 |
1.42e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 64.49 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 439 DALANVSLTLRRGEVTALVGYNGSGKSTL------------SKLACG-LYLPTEGRVLWDGTPTGDAD-PHALWQHVALV 504
Cdd:PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTalalmrlleqagGLVQCDkMLLRRRSRQVIELSEQSAAQmRHVRGADMAMI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 505 PQDyarwPLT-----------VRENITLGQPSSRgDTAVREACEAAGADEVVDKlgaglDTLLAREwlnGEELSGGQWQR 573
Cdd:PRK10261 110 FQE----PMTslnpvftvgeqIAESIRLHQGASR-EEAMVEAKRMLDQVRIPEA-----QTILSRY---PHQLSGGMRQR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRI--VLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQEL 650
Cdd:PRK10261 177 VMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSmgVIFITHDMGVVAeIADRVLVMYQGEAVETGSVEQI 256
|
....
gi 512154901 651 ARQP 654
Cdd:PRK10261 257 FHAP 260
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
443-677 |
4.44e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 62.80 E-value: 4.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKStLSKLACGLYLPT------EGRVLWDGTPTGDADPHALWQ----HVALVPQD--YAR 510
Cdd:PRK15134 27 DVSLQIEAGETLALVGESGSGKS-VTALSILRLLPSppvvypSGDIRFHGESLLHASEQTLRGvrgnKIAMIFQEpmVSL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 511 WPLTVRENiTLGQPSSRGDTAVREACEAagadEVVDKLG-AGLDTllAREWLNG--EELSGGQWQRIALGRAFFRQAGLL 587
Cdd:PRK15134 106 NPLHTLEK-QLYEVLSLHRGMRREAARG----EILNCLDrVGIRQ--AAKRLTDypHQLSGGERQRVMIAMALLTRPELL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 588 VLDEPTANLDPRAEYRIFQRLRDLAR--DRIVLLVTHRITNV-AVADRIVVLDEGAVVQEGTYQEL--ARQPGLFRQLLs 662
Cdd:PRK15134 179 IADEPTTALDVSVQAQILQLLRELQQelNMGLLFITHNLSIVrKLADRVAVMQNGRCVEQNRAATLfsAPTHPYTQKLL- 257
|
250
....*....|....*
gi 512154901 663 yqvtsDADDEKQPGP 677
Cdd:PRK15134 258 -----NSEPSGDPVP 267
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
451-645 |
6.59e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 62.20 E-value: 6.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 451 GEVTALVGYNGSGKSTLSKLACGLYLPT--EGRVLW-DGTPTgdadpHALWQHVALVPQDYARWP-LTVRENIT----LG 522
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILAnNRKPT-----KQILKRTGFVTQDDILYPhLTVRETLVfcslLR 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 523 QPSSrgdtaVREACEAAGADEVVDKLGAGL--DTLLAREWLNGeeLSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRA 600
Cdd:PLN03211 169 LPKS-----LTKQEKILVAESVISELGLTKceNTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 512154901 601 EYRIFQRLRDLA-RDRIVLLVTHRITN--VAVADRIVVLDEGAVVQEG 645
Cdd:PLN03211 242 AYRLVLTLGSLAqKGKTIVTSMHQPSSrvYQMFDSVLVLSEGRCLFFG 289
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
425-597 |
8.01e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 61.89 E-value: 8.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 425 EIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWdGTPTGDA--DPHalwqHVA 502
Cdd:PRK11147 321 EMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAyfDQH----RAE 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 503 LVPQDyarwplTVRENITLGqpssrgdtavREACEAAGADEVVdkLGAGLDTLLA--REWLNGEELSGGQWQRIALGRAF 580
Cdd:PRK11147 394 LDPEK------TVMDNLAEG----------KQEVMVNGRPRHV--LGYLQDFLFHpkRAMTPVKALSGGERNRLLLARLF 455
|
170
....*....|....*..
gi 512154901 581 FRQAGLLVLDEPTANLD 597
Cdd:PRK11147 456 LKPSNLLILDEPTNDLD 472
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
445-660 |
8.88e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 61.57 E-value: 8.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 445 SLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTptgdaDPHAL------------WQH-----VALVPQD 507
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFS-----HITRLsfeqlqklvsdeWQRnntdmLSPGEDD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 508 YARwplTVRENITLGqpssrgdTAVREACEaagadevvdKLGA--GLDTLLAREWlngEELSGGQWQRIALGRAFFRQAG 585
Cdd:PRK10938 98 TGR---TTAEIIQDE-------VKDPARCE---------QLAQqfGITALLDRRF---KYLSTGETRKTLLCQALMSEPD 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 586 LLVLDEPTANLDPRAEYRIFQRLRDLARDRIVL-LVTHRITNV-AVADRIVVLDEGAVVQEGTYQELARQpGLFRQL 660
Cdd:PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQSGITLvLVLNRFDEIpDFVQFAGVLADCTLAETGEREEILQQ-ALVAQL 231
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
440-654 |
1.13e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 60.53 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLyLPTEGRVLWDGTPTGDADPHALWQ---------HVALVPQDyar 510
Cdd:PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL-IDYPGRVMAEKLEFNGQDLQRISEkerrnlvgaEVAMIFQD--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 511 wPLT-----------VRENITLGQPSSRgdtavreaceAAGADEVVDKLG-AGLDTLLAREWLNGEELSGGQWQRIALGR 578
Cdd:PRK11022 98 -PMTslnpcytvgfqIMEAIKVHQGGNK----------KTRRQRAIDLLNqVGIPDPASRLDVYPHQLSGGMSQRVMIAM 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 579 AFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLAR--DRIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK11022 167 AIACRPKLLIADEPTTALDVTIQAQIIELLLELQQkeNMALVLITHDLALVAeAAHKIIVMYAGQVVETGKAHDIFRAP 245
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
431-642 |
1.36e-09 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 58.43 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 431 HRYAGKGGDA---LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGL---YLPTEGRVLWDGTPtGDADPHALWQHVALV 504
Cdd:cd03233 10 SFTTGKGRSKipiLKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRtegNVSVEGDIHYNGIP-YKEFAEKYPGEIIYV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 505 PQDYARWP-LTVRENItlgqpssrgDTAVReaCEaagADEVVDKlgagldtllarewlngeeLSGGQWQRIALGRAFFRQ 583
Cdd:cd03233 89 SEEDVHFPtLTVRETL---------DFALR--CK---GNEFVRG------------------ISGGERKRVSIAEALVSR 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 584 AGLLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVT-----HRITNvaVADRIVVLDEGAVV 642
Cdd:cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVlKTTTFVSlyqasDEIYD--LFDKVLVLYEGRQI 199
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
441-660 |
2.97e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 59.95 E-value: 2.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLylptegrvlwDGTPTGDADPhALWQHVALVPQDYARWP-LTVRENI 519
Cdd:TIGR03719 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV----------DKDFNGEARP-QPGIKVGYLPQEPQLDPtKTVRENV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLGQPSSRGD-------------------------TAVREACEAAGADEVVDKLGAGLDTLLAREW-LNGEELSGGQWQR 573
Cdd:TIGR03719 90 EEGVAEIKDAldrfneisakyaepdadfdklaaeqAELQEIIDAADAWDLDSQLEIAMDALRCPPWdADVTKLSGGERRR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLArdRIVLLVTH-RITNVAVADRIVVLDEG-AVVQEGTY---- 647
Cdd:TIGR03719 170 VALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQEYP--GTVVAVTHdRYFLDNVAGWILELDRGrGIPWEGNYsswl 247
|
250 260
....*....|....*....|....*
gi 512154901 648 ------------QELARQPGLFRQL 660
Cdd:TIGR03719 248 eqkqkrleqeekEESARQKTLKREL 272
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
443-644 |
3.33e-09 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 59.80 E-value: 3.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 443 NVSLTLRRGEVTALVGYNGSGKStlsKLACGLY-----LPTEGRVLWDGTP-----TGDADPHALwqhvALVPQDYARWP 512
Cdd:NF040905 278 DVSLNVRRGEIVGIAGLMGAGRT---ELAMSVFgrsygRNISGTVFKDGKEvdvstVSDAIDAGL----AYVTEDRKGYG 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 513 L----TVRENIT---LGQPSSRGdtAVREACEAAGADEVVDKLGAGLDTLLAREwlngEELSGGQWQRIALGRAFFRQAG 585
Cdd:NF040905 351 LnlidDIKRNITlanLGKVSRRG--VIDENEEIKVAEEYRKKMNIKTPSVFQKV----GNLSGGNQQKVVLSKWLFTDPD 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 586 LLVLDEPTANLDPRAEYRIFQRLRDLARD-RIVLLVTHRITNV-AVADRIVVLDEGAVVQE 644
Cdd:NF040905 425 VLILDEPTRGIDVGAKYEIYTIINELAAEgKGVIVISSELPELlGMCDRIYVMNEGRITGE 485
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
411-655 |
3.86e-09 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 58.98 E-value: 3.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 411 MRRGTCRPASPERIEIEAVCHRYAGKggDALANVSLTLRRGEVTALVGYNGSGKSTlSKLACGLYLPTEGRVLWDgTPTG 490
Cdd:NF000106 1 MTRKTISNGARNAVEVRGLVKHFGEV--KAVDGVDLDVREGTVLGVLGP*GAA**R-GALPAHV*GPDAGRRPWR-F*TW 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 491 DADPHALWQHVAL--VPQDYARWPLTVRENI-TLGQPS--SRGDTAVReaceaagADEVVDKLgagldTLLAREWLNGEE 565
Cdd:NF000106 77 CANRRALRRTIG*hrPVR*GRRESFSGRENLyMIGR*LdlSRKDARAR-------ADELLERF-----SLTEAAGRAAAK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 566 LSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVA--VADRIVVLDEGAVVQ 643
Cdd:NF000106 145 YSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAeqLAHELTVIDRGRVIA 224
|
250
....*....|..
gi 512154901 644 EGTYQELARQPG 655
Cdd:NF000106 225 DGKVDELKTKVG 236
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
438-648 |
5.07e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 59.58 E-value: 5.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 438 GDA--LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGtptgD-------ADP-------------- 494
Cdd:PRK11147 14 SDAplLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ----DlivarlqQDPprnvegtvydfvae 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 495 ------------HALWQHVALVPQDyarwpltvrENIT-LGQpssrgdtaVREACEAAGA-------DEVVDKLGAGLDT 554
Cdd:PRK11147 90 gieeqaeylkryHDISHLVETDPSE---------KNLNeLAK--------LQEQLDHHNLwqlenriNEVLAQLGLDPDA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 555 LLArewlngeELSGGqWQR-IALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLaRDRIVLLVTHR--ITNVAVad 631
Cdd:PRK11147 153 ALS-------SLSGG-WLRkAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-QGSIIFISHDRsfIRNMAT-- 221
|
250
....*....|....*...
gi 512154901 632 RIVVLDEGAVVQ-EGTYQ 648
Cdd:PRK11147 222 RIVDLDRGKLVSyPGNYD 239
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
424-655 |
1.01e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 58.60 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagkgGD--ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLylptegRVLWDGTPT---GD-ADPH-- 495
Cdd:NF033858 2 ARLEGVSHRY----GKtvALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGA------RKIQQGRVEvlgGDmADARhr 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 496 -ALWQHVALVPQDYAR--WP-LTVRENI----TL-GQpssrgDTAVREAceaagadEVVDKLGA-GLDTLLAREwlnGEE 565
Cdd:NF033858 72 rAVCPRIAYMPQGLGKnlYPtLSVFENLdffgRLfGQ-----DAAERRR-------RIDELLRAtGLAPFADRP---AGK 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 566 LSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPraeyrifqrlrdLAR-------DRI--------VLlvthritnVAVA 630
Cdd:NF033858 137 LSGGMKQKLGLCCALIHDPDLLILDEPTTGVDP------------LSRrqfweliDRIraerpgmsVL--------VATA 196
|
250 260 270
....*....|....*....|....*....|...
gi 512154901 631 --------DRIVVLDEGAVVQEGTYQELARQPG 655
Cdd:NF033858 197 ymeeaerfDWLVAMDAGRVLATGTPAELLARTG 229
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
543-654 |
1.42e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 58.10 E-value: 1.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 543 EVVDKLG----AGLDTL-LARewlNGEELSGGQWQRIALGRaffrQAG------LLVLDEPTANLDPRAEYRIFQ---RL 608
Cdd:TIGR00630 464 EIRERLGflidVGLDYLsLSR---AAGTLSGGEAQRIRLAT----QIGsgltgvLYVLDEPSIGLHQRDNRRLINtlkRL 536
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 512154901 609 RDLArdRIVLLVTHRITNVAVADRIVVLDEGA------VVQEGTYQELARQP 654
Cdd:TIGR00630 537 RDLG--NTLIVVEHDEDTIRAADYVIDIGPGAgehggeVVASGTPEEILANP 586
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
441-494 |
2.26e-08 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 55.42 E-value: 2.26e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACG--LYLPTEGRVLWDGTPTGDADP 494
Cdd:CHL00131 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGESILDLEP 78
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
566-641 |
3.03e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 56.66 E-value: 3.03e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512154901 566 LSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLA-RDRIVLLVTHRITN-VAVADRIVVLDEGAV 641
Cdd:PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAkKDKGIIIISSEMPElLGITDRILVMSNGLV 469
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
427-637 |
4.67e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 53.34 E-value: 4.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 427 EAVCHRYagkgGDALANVSL-TLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTptgdadphalwqHVALVP 505
Cdd:cd03222 4 PDCVKRY----GVFFLLVELgVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 506 QDYarwpltvrenitlgqpssrgdtavreaceaagadevvdklgagldtllarewlngeELSGGQWQRIALGRAFFRQAG 585
Cdd:cd03222 68 QYI--------------------------------------------------------DLSGGELQRVAIAAALLRNAT 91
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 586 LLVLDEPTANLDPR---AEYRIFQRLRDLARdRIVLLVTHRITNVA-VADRIVVLD 637
Cdd:cd03222 92 FYLFDEPSAYLDIEqrlNAARAIRRLSEEGK-KTALVVEHDLAVLDyLSDRIHVFE 146
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
438-639 |
5.69e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 55.83 E-value: 5.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 438 GDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPHA-LWQHVALVPQD------YAR 510
Cdd:PRK15439 276 GEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQrLARGLVYLPEDrqssglYLD 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 511 WPLtvRENI---TLGQPSsrgdTAVREACEAAgadeVVDKLGAGLDTLLAREWLNGEELSGGQWQRIALGRAFFRQAGLL 587
Cdd:PRK15439 356 APL--AWNVcalTHNRRG----FWIKPARENA----VLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 512154901 588 VLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTHRITNV-AVADRIVVLDEG 639
Cdd:PRK15439 426 IVDEPTRGVDVSARNDIYQLIRSIAAQNVaVLFISSDLEEIeQMADRVLVMHQG 479
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
440-654 |
8.48e-08 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 54.42 E-value: 8.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLyLPTEGRVLWDGTPTGDADphalwqHVALVPQDYARwplTVRENI 519
Cdd:PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV-TKDNWRVTADRMRFDDID------LLRLSPRERRK---LVGHNV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TL--GQPSSRGDTAVREACEAAG---------------------ADEVVDKLGAGLDTLLAREWlnGEELSGGQWQRIAL 576
Cdd:PRK15093 92 SMifQEPQSCLDPSERVGRQLMQnipgwtykgrwwqrfgwrkrrAIELLHRVGIKDHKDAMRSF--PYELTEGECQKVMI 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDR--IVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQ 653
Cdd:PRK15093 170 AIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNntTILLISHDLQMLSqWADKINVLYCGQTVETAPSKELVTT 249
|
.
gi 512154901 654 P 654
Cdd:PRK15093 250 P 250
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
439-649 |
1.10e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 55.50 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 439 DALANVSLTLRRGEVTALVGYNGSGKSTLSK-LACGLY---LPTEGRVLWDGTPTGDADPHaLWQHVALVPQDYARWP-L 513
Cdd:TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKtIASNTDgfhIGVEGVITYDGITPEEIKKH-YRGDVVYNAETDVHFPhL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 514 TVREN----ITLGQPSSRGDTAVREACEAAGADEVVDKLGAGL--DTLLAREWLNGeeLSGGQWQRIALGRAFFRQAGLL 587
Cdd:TIGR00956 154 TVGETldfaARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHtrNTKVGNDFVRG--VSGGERKRVSIAEASLGGAKIQ 231
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512154901 588 VLDEPTANLDPRAEYRIFQRLRDLAR--DRIVLLVTHRITNVA--VADRIVVLDEGAVVQEGTYQE 649
Cdd:TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANilDTTPLVAIYQCSQDAyeLFDKVIVLYEGYQIYFGPADK 297
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
438-623 |
1.15e-07 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 55.14 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 438 GDALAN-VSLTLRRGEVTALVGYNGSGKSTLSKLACGLYlPTEGrvlwdGTPTGDADphalwQHVALVPQDYARWPLTVR 516
Cdd:TIGR00954 464 GDVLIEsLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYG-----GRLTKPAK-----GKLFYVPQRPYMTLGTLR 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 517 ENITLgqPSSRGDTAVREACEAAgADEVVDKLGagLDTLLARE--------WLngEELSGGQWQRIALGRAFFRQAGLLV 588
Cdd:TIGR00954 533 DQIIY--PDSSEDMKRRGLSDKD-LEQILDNVQ--LTHILEREggwsavqdWM--DVLSGGEKQRIAMARLFYHKPQFAI 605
|
170 180 190
....*....|....*....|....*....|....*.
gi 512154901 589 LDEPTANLDPRAEYRIFQRLRDLardRIVLL-VTHR 623
Cdd:TIGR00954 606 LDECTSAVSVDVEGYMYRLCREF---GITLFsVSHR 638
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
422-486 |
1.16e-07 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 53.67 E-value: 1.16e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 422 ERIEiEAVCHRYAGKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDG 486
Cdd:PRK13546 22 ERMK-DALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
440-482 |
1.23e-07 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 54.90 E-value: 1.23e-07
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRV 482
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
440-654 |
5.35e-07 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 52.03 E-value: 5.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLyLPTEGRV----LWDGTPTGDADPHAL----WQHVALVPQD---- 507
Cdd:PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-LAANGRIggsaTFNGREILNLPEKELnklrAEQISMIFQDpmts 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 508 ---YARWPLTVRENITLGQPSSRgdtavREACEaagadEVVDKLGAgLDTLLAREWLN--GEELSGGQWQRIALGRAFFR 582
Cdd:PRK09473 110 lnpYMRVGEQLMEVLMLHKGMSK-----AEAFE-----ESVRMLDA-VKMPEARKRMKmyPHEFSGGMRQRVMIAMALLC 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512154901 583 QAGLLVLDEPTANLDPRAEYRIFQRLRDLARD--RIVLLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK09473 179 RPKLLIADEPTTALDVTVQAQIMTLLNELKREfnTAIIMITHDLGVVAgICDKVLVMYAGRTMEYGNARDVFYQP 253
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
441-639 |
5.67e-07 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 50.32 E-value: 5.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTL-SKLA----CGLylpTEGRVLWDGTPTGDAdphaLWQHVALVPQDYARWP-LT 514
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLlDVLAgrktAGV---ITGEILINGRPLDKN----FQRSTGYVEQQDVHSPnLT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 515 VREnitlgqpssrgdtavreaceaagadevvdklgagldTLLAREWLNGeeLSGGQWQRIALGRAFFRQAGLLVLDEPTA 594
Cdd:cd03232 96 VRE------------------------------------ALRFSALLRG--LSVEQRKRLTIGVELAAKPSILFLDEPTS 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 512154901 595 NLDPRAEYRIFQRLRDLARD-RIVLLVTHR--ITNVAVADRIVVLDEG 639
Cdd:cd03232 138 GLDSQAAYNIVRFLKKLADSgQAILCTIHQpsASIFEKFDRLLLLKRG 185
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
450-622 |
1.10e-06 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 49.91 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 450 RGEVTALVGYNGSGKSTLskLACGLYLPTegrvlWDGTPTGDADPHAlwqhvalvpqdyarwPLTVRENITLGQ-----P 524
Cdd:cd03240 21 FSPLTLIVGQNGAGKTTI--IEALKYALT-----GELPPNSKGGAHD---------------PKLIREGEVRAQvklafE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 525 SSRGD--TAVREAceaAGADEVVDKLGAGLDTLLAREwlnGEELSGGQWQ------RIALGRAFFRQAGLLVLDEPTANL 596
Cdd:cd03240 79 NANGKkyTITRSL---AILENVIFCHQGESNWPLLDM---RGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNL 152
|
170 180 190
....*....|....*....|....*....|..
gi 512154901 597 DpraEYRIFQRLRDLARDRI------VLLVTH 622
Cdd:cd03240 153 D---EENIEESLAEIIEERKsqknfqLIVITH 181
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
440-654 |
1.60e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 51.39 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGT---PTGDADPHALWQHVALVPQD-YARwpLTV 515
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQridTLSPGKLQALRRDIQFIFQDpYAS--LDP 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENI--TLGQPssrgdTAVREACEAAGADEVVDKLGAGLDTLLAREWLNGEELSGGQWQRIALGRAFFRQAGLLVLDEPT 593
Cdd:PRK10261 417 RQTVgdSIMEP-----LRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 594 ANLDPRAEYRIFQRLRDLARDRIV--LLVTHRITNVA-VADRIVVLDEGAVVQEGTYQELARQP 654
Cdd:PRK10261 492 SALDVSIRGQIINLLLDLQRDFGIayLFISHDMAVVErISHRVAVMYLGQIVEIGPRRAVFENP 555
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
424-597 |
2.15e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 50.66 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 424 IEIEAVCHRYagKGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWdgtpTGDADphalwqhVAL 503
Cdd:PRK15064 320 LEVENLTKGF--DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW----SENAN-------IGY 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 504 VPQDYARW---PLTVRENITLGQPSSRGDTAVREAceaagadevvdklgagldtlLAREWLNGEE-------LSGGQWQR 573
Cdd:PRK15064 387 YAQDHAYDfenDLTLFDWMSQWRQEGDDEQAVRGT--------------------LGRLLFSQDDikksvkvLSGGEKGR 446
|
170 180
....*....|....*....|....
gi 512154901 574 IALGRAFFRQAGLLVLDEPTANLD 597
Cdd:PRK15064 447 MLFGKLMMQKPNVLVMDEPTNHMD 470
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
551-646 |
3.21e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 48.79 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 551 GLDTL-LAREwlnGEELSGGQWQRIALGRaffrQAG------LLVLDEPTANLDPRAEYRI---FQRLRDLarDRIVLLV 620
Cdd:cd03270 125 GLGYLtLSRS---APTLSGGEAQRIRLAT----QIGsgltgvLYVLDEPSIGLHPRDNDRLietLKRLRDL--GNTVLVV 195
|
90 100
....*....|....*....|....*.
gi 512154901 621 THRITNVAVADRIVVLDEGAVVQEGT 646
Cdd:cd03270 196 EHDEDTIRAADHVIDIGPGAGVHGGE 221
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
450-637 |
4.68e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.98 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 450 RGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVlwdgtptgdadphalwqhVALVPQDYARWPLTVRENITLGQpssrgd 529
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV------------------IYIDGEDILEEVLDQLLLIIVGG------ 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 530 tavreaceaagadevvdklgagldtllarewlNGEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLR 609
Cdd:smart00382 57 --------------------------------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEE 104
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 512154901 610 DLA-------RDRIVLLVTHRITN------VAVADRIVVLD 637
Cdd:smart00382 105 LRLllllkseKNLTVILTTNDEKDlgpallRRRFDRRIVLL 145
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
543-678 |
6.20e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 49.83 E-value: 6.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 543 EVVDKLGAGLDTL--LAREWLNGEE----LSGGQWQRIALGRAFFRQ-AGLL-VLDEPTANLDPRAEYR---IFQRLRDl 611
Cdd:PRK00635 448 EVLQGLKSRLSILidLGLPYLTPERalatLSGGEQERTALAKHLGAElIGITyILDEPSIGLHPQDTHKlinVIKKLRD- 526
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 612 aRDRIVLLVTHRITNVAVADRIVVLDEGA------VVQEGTYQE-LARQPGLFRQLLSYQVTSDADDEKQPGPG 678
Cdd:PRK00635 527 -QGNTVLLVEHDEQMISLADRIIDIGPGAgifggeVLFNGSPREfLAKSDSLTAKYLRQELTIPIPEKRTNSLG 599
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
451-598 |
7.44e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 47.54 E-value: 7.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 451 GEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTGDADPH---ALWQHVALVPQDyarwpLTVRENITLgqpssR 527
Cdd:PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSrfmAYLGHLPGLKAD-----LSTLENLHF-----L 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 512154901 528 GDTAVREACEAAGADEVVDKLGAGLDTLLarewlngEELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDP 598
Cdd:PRK13543 107 CGLHGRRAKQMPGSALAIVGLAGYEDTLV-------RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
566-634 |
1.25e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.81 E-value: 1.25e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 512154901 566 LSGGQWQRIA----LGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLA-RDRIVLLVTHRITNVAVADRIV 634
Cdd:cd03227 78 LSGGEKELSAlaliLALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLvKGAQVIVITHLPELAELADKLI 151
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
440-640 |
1.89e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 45.78 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 440 ALANVSLTLRRGEVTALVGYNGSGKSTLskLACGLYLPTEGRvLWDGTPTgdadphalwqhvalvpqdYARWPLtvrenI 519
Cdd:cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTL--VNEGLYASGKAR-LISFLPK------------------FSRNKL-----I 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 520 TLGQPSSrgdtavreaceaagadevVDKLGAGLDTLlarewlnGEE---LSGGQWQRIALGRAFFRQAG--LLVLDEPTA 594
Cdd:cd03238 64 FIDQLQF------------------LIDVGLGYLTL-------GQKlstLSGGELQRVKLASELFSEPPgtLFILDEPST 118
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 512154901 595 NLDPRAEYRIFQRLRDLaRDR--IVLLVTHRITNVAVADRIVVLDEGA 640
Cdd:cd03238 119 GLHQQDINQLLEVIKGL-IDLgnTVILIEHNLDVLSSADWIIDFGPGS 165
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
558-622 |
3.01e-05 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 46.61 E-value: 3.01e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512154901 558 REWLNGEELSGGQWQRIALGRAFFRQA---GLLVLDEPTANLDPRAEYRIFQRLRDLARDRI-VLLVTH 622
Cdd:pfam13304 229 GGELPAFELSDGTKRLLALLAALLSALpkgGLLLIDEPESGLHPKLLRRLLELLKELSRNGAqLILTTH 297
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
437-652 |
6.51e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 46.39 E-value: 6.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 437 GGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLA-----------CGLyLPTEGRVLWDGTP------TGDADPHALWQ 499
Cdd:PLN03073 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMamhaidgipknCQI-LHVEQEVVGDDTTalqcvlNTDIERTQLLE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 500 HVALVPQDYArwplTVRENITLGQPSSRGDTAVR---------------EACEAAGADEVVDKLGAGLDTLLAREWLNGE 564
Cdd:PLN03073 268 EEAQLVAQQR----ELEFETETGKGKGANKDGVDkdavsqrleeiykrlELIDAYTAEARAASILAGLSFTPEMQVKATK 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 565 ELSGGQWQRIALGRAFFRQAGLLVLDEPTANLDPRAEYRIFQRLRDLARDRIVLLVTHRITNVAVADRIVVLDEGAVVQE 644
Cdd:PLN03073 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYK 423
|
....*...
gi 512154901 645 GTYQELAR 652
Cdd:PLN03073 424 GDYDTFER 431
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
436-653 |
7.84e-05 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 44.78 E-value: 7.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 436 KGGDALANVSLTLRRGEVTALVGYNGSGKSTLSKLACGL--YLPTEGRVLWDGTPTGDADPH--------ALWQHVALVP 505
Cdd:PRK09580 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELSPEdragegifMAFQYPVEIP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 506 QDYARWPLTVRENitlgqpssrgdtAVREACEAAGAD---------EVVDKLGAGLDtLLAREWLNGeeLSGGQWQRIAL 576
Cdd:PRK09580 92 GVSNQFFLQTALN------------AVRSYRGQEPLDrfdfqdlmeEKIALLKMPED-LLTRSVNVG--FSGGEKKRNDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 577 GRAFFRQAGLLVLDEPTANLDPRAEYRIFQ---RLRDLARDRIVllVTH--RITNVAVADRIVVLDEGAVVQEGTYQeLA 651
Cdd:PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADgvnSLRDGKRSFII--VTHyqRILDYIKPDYVHVLYQGRIVKSGDFT-LV 233
|
..
gi 512154901 652 RQ 653
Cdd:PRK09580 234 KQ 235
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
441-601 |
7.99e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 45.88 E-value: 7.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 441 LANVSLTLRRGEVTALVGYNGSGKSTLSKLACGLYLPTEGRVLWDGTPTgdadphalwqhVALVPQDyarwP-----LTV 515
Cdd:PRK11819 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIK-----------VGYLPQE----PqldpeKTV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 516 RENITLG-------------------QPSSRGD------TAVREACEAAGADEVVDKLGAGLDTLLAREW-LNGEELSGG 569
Cdd:PRK11819 88 RENVEEGvaevkaaldrfneiyaayaEPDADFDalaaeqGELQEIIDAADAWDLDSQLEIAMDALRCPPWdAKVTKLSGG 167
|
170 180 190
....*....|....*....|....*....|..
gi 512154901 570 QWQRIALGRAFFRQAGLLVLDEPTANLDprAE 601
Cdd:PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLD--AE 197
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
565-646 |
1.17e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 44.53 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 565 ELSGGQWQRIALGRAFFRQA---GLLVLDEPTANL---DPRAEYRIFQRLRDLARDriVLLVTHRITNVAVADRIVVLDE 638
Cdd:cd03271 169 TLSGGEAQRIKLAKELSKRStgkTLYILDEPTTGLhfhDVKKLLEVLQRLVDKGNT--VVVIEHNLDVIKCADWIIDLGP 246
|
90
....*....|....
gi 512154901 639 ------GAVVQEGT 646
Cdd:cd03271 247 eggdggGQVVASGT 260
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
566-651 |
1.77e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 45.00 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 566 LSGGQWQRIALGRAFFRQAG---LLVLDEPTANL---DPRAEYRIFQRLRDLARDriVLLVTHRITNVAVADRIVVLDE- 638
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKRSTgrtLYILDEPTTGLhfdDIKKLLEVLQRLVDKGNT--VVVIEHNLDVIKTADYIIDLGPe 907
|
90
....*....|....*...
gi 512154901 639 -----GAVVQEGTYQELA 651
Cdd:TIGR00630 908 ggdggGTVVASGTPEEVA 925
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
551-654 |
3.20e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 44.25 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 551 GLDTL-LARewlNGEELSGGQWQRI----ALGraffrqAGLL----VLDEPTANLDPRAEYRIFQRLRDLaRDR--IVLL 619
Cdd:COG0178 473 GLDYLtLDR---SAGTLSGGEAQRIrlatQIG------SGLVgvlyVLDEPSIGLHQRDNDRLIETLKRL-RDLgnTVIV 542
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 512154901 620 VTH-----RitnvaVADRIVVLDEGA------VVQEGTYQELARQP 654
Cdd:COG0178 543 VEHdedtiR-----AADYIIDIGPGAgehggeVVAQGTPEEILKNP 583
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
543-654 |
5.83e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 43.14 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 543 EVVDKLG----AGLDTL-LARewlNGEELSGGQWQRIALGraffRQAG------LLVLDEPTANLDPRAEYRIFQ---RL 608
Cdd:PRK00349 465 EIRERLKflvdVGLDYLtLSR---SAGTLSGGEAQRIRLA----TQIGsgltgvLYVLDEPSIGLHQRDNDRLIEtlkHL 537
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 512154901 609 RDLARDRIVllVTHRITNVAVADRIVVLDEGA------VVQEGTYQELARQP 654
Cdd:PRK00349 538 RDLGNTLIV--VEHDEDTIRAADYIVDIGPGAgvhggeVVASGTPEEIMKNP 587
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
564-623 |
8.98e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 8.98e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 512154901 564 EELSGGQW-Q-----RIALGRAFFRQAGLLVLDEPTANLDP-RAEyRIFQRLRDLARDRIVLLVTHR 623
Cdd:COG4717 557 EELSRGTReQlylalRLALAELLAGEPLPLILDDAFVNFDDeRLR-AALELLAELAKGRQVIYFTCH 622
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
562-622 |
1.99e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512154901 562 NGEE-----LSGGQwqRIALGRAFfRQA---------GLLVLDEPTANLDprAEYR-----IFQR-LRDLARdriVLLVT 621
Cdd:PRK03918 780 QGKErpltfLSGGE--RIALGLAF-RLAlslylagniPLLILDEPTPFLD--EERRrklvdIMERyLRKIPQ---VIIVS 851
|
.
gi 512154901 622 H 622
Cdd:PRK03918 852 H 852
|
|
| |
