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Conserved domains on  [gi|511347964|ref|YP_008080888|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Tarragoilus diuturnus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-340 2.72e-92

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 278.63  E-value: 2.72e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   1 MHNNPAKLLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHa 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  81 stdMTIFMNYNIFLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSlFMSMVILFSIV 160
Cdd:MTH00160  80 ---LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAI 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 161 IGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKFS 240
Cdd:MTH00160 156 IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFL 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 241 LFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFMLSYTEPKWIpKLQYKNIFIIQ 320
Cdd:MTH00160 236 LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWN-LKKKKNKFSLI 314

                        330       340
                 ....*....|....*....|
gi 511347964 321 TMTLSTISTLGLLMCTALFN 340
Cdd:MTH00160 315 LNFLSFISLFGLILSSLLFL 334
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-340 2.72e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 278.63  E-value: 2.72e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   1 MHNNPAKLLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHa 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  81 stdMTIFMNYNIFLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSlFMSMVILFSIV 160
Cdd:MTH00160  80 ---LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAI 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 161 IGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKFS 240
Cdd:MTH00160 156 IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFL 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 241 LFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFMLSYTEPKWIpKLQYKNIFIIQ 320
Cdd:MTH00160 236 LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWN-LKKKKNKFSLI 314

                        330       340
                 ....*....|....*....|
gi 511347964 321 TMTLSTISTLGLLMCTALFN 340
Cdd:MTH00160 315 LNFLSFISLFGLILSSLLFL 334
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-280 3.04e-31

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 119.34  E-value: 3.04e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   24 ASSWLAVWMGLEINLLSFIPLMT-NSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTIFMNYNIFLT------- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   96 ------LIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLIL-MTWQKVAPLMLL-------SYVIKMSLFMSMVILFSIVI 161
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  162 GSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGEN----LWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITM-----N 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDygglaK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 511347964  233 KFPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMV 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-299 2.20e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.22  E-value: 2.20e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   8 LLFSSTLisGTLISISASSWLAVWMGLEINLLSFIPL-MTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTI 86
Cdd:COG1007  107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  87 F----------MNYNIFLT----LIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLL---------SY 143
Cdd:COG1007  185 LagiaaalaagGANSPLLLlglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 144 VIKMSLFMSMVILFSIVIGSLGGLNQTSLRKLMAYSSINHLGWM----AAAMSMGENLWVLYFLVYSFlTSALIFLFnTF 219
Cdd:COG1007  265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLF-MNLGAFAV-IL 342

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 220 QMFHINQSMITMNKF-------PLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLR 292
Cdd:COG1007  343 LLSRKGGEAEEIEDLaglarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422


                 ....*..
gi 511347964 293 VGFSAFM 299
Cdd:COG1007  423 VVKAMYF 429
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-299 1.25e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 1.25e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   15 ISGTLISISASSWLAVWMGLEINLLSFIPLMTNS-NNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTIFMNYNIF 93
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKrKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   94 LT--------------LIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSLF--------- 150
Cdd:TIGR01770 192 LSngmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFgfseawqif 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  151 MSMVILFSIVIGSLGGLNQTSLRKLMAYSSINHLGW-MAAAMSMGENLW--VLYFLVYSFLTSALIFLFNTFQMFHINQS 227
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIkaVLFYIFIYALMSLGAFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 511347964  228 MITMNKF-------PLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFM 299
Cdd:TIGR01770 352 IEYISDFaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYF 430
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-340 2.72e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 278.63  E-value: 2.72e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   1 MHNNPAKLLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHa 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  81 stdMTIFMNYNIFLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSlFMSMVILFSIV 160
Cdd:MTH00160  80 ---LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAI 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 161 IGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKFS 240
Cdd:MTH00160 156 IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFL 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 241 LFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFMLSYTEPKWIpKLQYKNIFIIQ 320
Cdd:MTH00160 236 LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWN-LKKKKNKFSLI 314

                        330       340
                 ....*....|....*....|
gi 511347964 321 TMTLSTISTLGLLMCTALFN 340
Cdd:MTH00160 315 LNFLSFISLFGLILSSLLFL 334
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-338 2.94e-69

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 220.08  E-value: 2.94e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   6 AKLLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIIL---MHAST 82
Cdd:MTH00112   5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTnawNTGQW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  83 DMTIfMNYNIFLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLL---SYVIKMSLFMSMVILfSI 159
Cdd:MTH00112  85 DITQ-LTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLlmtSNSLNPTLLLTLAIL-ST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 160 VIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKF 239
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 240 SLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFML-----SYTEPKWIPKLQYK 314
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITlppntTNMMMKWRTKPKKN 322

                        330       340
                 ....*....|....*....|....
gi 511347964 315 NIfiiqTMTLSTISTLGLLMCTAL 338
Cdd:MTH00112 323 TL----TATLTTLSTLLLPLSPMI 342
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 3-296 5.27e-69

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 219.33  E-value: 5.27e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   3 NNPAKLLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSII--LMHA 80
Cdd:MTH00105   2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  81 STDMTIFMNYNIFLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLL---SYVIKMSLFMSMVILf 157
Cdd:MTH00105  82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTLAIL- 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 158 SIVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLL 237
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 511347964 238 KFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFS 296
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYS 299
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 8-333 4.13e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 204.27  E-value: 4.13e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   8 LLFSSTLisGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIIL---MHASTDM 84
Cdd:MTH00135   9 LLFSLGL--GTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawLTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  85 TiFMNYNIFLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIK-MSLFMSMVILFSIVIGS 163
Cdd:MTH00135  87 Q-QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPtNPTLLITLGLTSTLVGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 164 LGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKFSLFS 243
Cdd:MTH00135 166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 244 ILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGF------SAFMLSYTEPKWIPKLQyknif 317
Cdd:MTH00135 246 ILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYamtltiSPNTLNGTTPWRLPSTQ----- 320

                        330
                 ....*....|....*.
gi 511347964 318 IIQTMTLSTISTLGLL 333
Cdd:MTH00135 321 LTLPLAISTTATLMLL 336
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 12-292 1.50e-62

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 202.84  E-value: 1.50e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  12 STLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTD--MTIFMN 89
Cdd:MTH00070  11 SSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGewTIMNMQ 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  90 YNIFLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLL---SYVIKMSLFMSMVILfSIVIGSLGG 166
Cdd:MTH00070  91 TPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLiqiSHLLNSNLLIIMGLL-STLIGGWGG 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 167 LNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKFSLFSILL 246
Cdd:MTH00070 170 LNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLL 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 511347964 247 SLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLR 292
Cdd:MTH00070 250 SLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLR 295
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-340 1.92e-62

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 202.47  E-value: 1.92e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   8 LLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMH-ASTDMTI 86
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAwLSGSWSI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  87 FMNYNIFLTLIMST-LLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKmSLFMSMVIL---FSIVIG 162
Cdd:MTH00041  87 NGPLNTLSSIIITLaLALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISN-LLNSNILILcgiLSVLVG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 163 SLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKFSLF 242
Cdd:MTH00041 166 GWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFI 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 243 SILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFMLSYTEPKWI----PKLQYKNIFI 318
Cdd:MTH00041 246 LSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISlfswRNSGNITVYG 325

                        330       340
                 ....*....|....*....|..
gi 511347964 319 IQTMTLSTISTLGLLMCTALFN 340
Cdd:MTH00041 326 VILSILSSISILGLLLIPLFLS 347
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-303 1.97e-56

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 186.52  E-value: 1.97e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   5 PAKLLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDM 84
Cdd:MTH00011   6 PTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  85 TIfmnyNIFLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYV--IKMSLFMSMVILFSIVIG 162
Cdd:MTH00011  86 LK----NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 163 SLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKFSLF 242
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 511347964 243 SILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFMLSYT 303
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPT 302
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 8-301 5.37e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 185.94  E-value: 5.37e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   8 LLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDM--T 85
Cdd:MTH00200   7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQwgI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  86 IFMNYNIFLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKM--SLFMSMVILFSIVIGS 163
Cdd:MTH00200  87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPAlnSNILLLLGLLSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 164 LGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKFSLFS 243
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 511347964 244 ILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFMLS 301
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTL 304
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 6.93e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 182.39  E-value: 6.93e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   5 PAKLLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDM 84
Cdd:MTH00144   4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  85 TIFMnyniflTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSLFMSMVILFSI---VI 161
Cdd:MTH00144  84 WFSM------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaLV 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 162 GSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHInQSMITMNKFPLLKFSL 241
Cdd:MTH00144 158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSI 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 511347964 242 FSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFMLSY 302
Cdd:MTH00144 237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSS 297
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-334 2.54e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 170.24  E-value: 2.54e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   9 LFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTIFM 88
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  89 NYnifltLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSLFMSMVILFSIVIGSLGGLN 168
Cdd:MTH00197  82 VV-----LVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 169 QTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKFPLLKFSLFSILLSL 248
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 249 GGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFMLSytepKWIPKLQYKNIFIIQTMTLSTIS 328
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILS----NWMINFLMKINLLYSGLFILLMM 312


                 ....*.
gi 511347964 329 TLGLLM 334
Cdd:MTH00197 313 MLPLLM 318
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-280 3.04e-31

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 119.34  E-value: 3.04e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   24 ASSWLAVWMGLEINLLSFIPLMT-NSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTIFMNYNIFLT------- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   96 ------LIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLIL-MTWQKVAPLMLL-------SYVIKMSLFMSMVILFSIVI 161
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  162 GSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGEN----LWVLYFLVYSFLTSALIFLFNTFQMFHINQSMITM-----N 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDygglaK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 511347964  233 KFPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMV 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-299 2.20e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.22  E-value: 2.20e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   8 LLFSSTLisGTLISISASSWLAVWMGLEINLLSFIPL-MTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTI 86
Cdd:COG1007  107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  87 F----------MNYNIFLT----LIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLL---------SY 143
Cdd:COG1007  185 LagiaaalaagGANSPLLLlglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 144 VIKMSLFMSMVILFSIVIGSLGGLNQTSLRKLMAYSSINHLGWM----AAAMSMGENLWVLYFLVYSFlTSALIFLFnTF 219
Cdd:COG1007  265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLF-MNLGAFAV-IL 342

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 220 QMFHINQSMITMNKF-------PLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLR 292
Cdd:COG1007  343 LLSRKGGEAEEIEDLaglarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422


                 ....*..
gi 511347964 293 VGFSAFM 299
Cdd:COG1007  423 VVKAMYF 429
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 17-293 6.73e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 117.05  E-value: 6.73e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  17 GTLISISASSWLAVWMGLEINLLS-FIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTIFMNYNIFLT 95
Cdd:MTH00196   5 GILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYINLVLN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  96 ---------------LIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSLFMSMVILFSIV 160
Cdd:MTH00196  85 sgqsfssvsvpigylLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 161 IGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFL-------TSALIFLFNTFQMFHINQSMITMNK 233
Cdd:MTH00196 165 VGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIyiimsicVFSIILALNVYKNLIIEFSGLSRRL 244

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 511347964 234 fPLLKFSLFSILLSLGGLPPFLGFLPKWLVIqLMAELNHSYMITIM-VMMTLITLFYYLRV 293
Cdd:MTH00196 245 -PILAITLALTFLSIAGIPPLVGFLGKWLIL-LSGVVYQYYLIFLLaVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
17-293 1.24e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 112.61  E-value: 1.24e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  17 GTLISISASSWLAVWMGLEI-NLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTIF-------- 87
Cdd:PRK05777 115 GMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFagiakala 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  88 --MNYNIFLT----LIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVA---PLMLLSYVIKMSLFMSMVILF- 157
Cdd:PRK05777 195 dgSGNSLLLLfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVAFGGLSEDWQQVLa 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 158 -----SIVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWV----LYFLVYSFLTSALiFLFNTFqMFHINQSM 228
Cdd:PRK05777 275 iiaiaSMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsavlFYLLAYLFMTLGA-FGVISL-LRRKGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 511347964 229 ITMNKF-------PLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRV 293
Cdd:PRK05777 353 ESISDFaglskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 17-293 6.25e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 110.49  E-value: 6.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  17 GTLISISASSWLAVWMGLEINLLS-FIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTIFMNYNIFLT 95
Cdd:MTH00199 109 GSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILT 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  96 ------LIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSLFMSMVILFSIVIGSLGGLNQ 169
Cdd:MTH00199 189 gdvgkiLITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALNQ 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 170 TSLRKLMAYSSINHLGWMAAAMSMGEN----LWVLYFLVYSFLT--SALIFLFNTFQMFHINQSMITMNKFPLLKFSLFS 243
Cdd:MTH00199 269 TKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSicSFSIILSLKLTKGLIVEVSGLSRKNPVIALTLAL 348

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 511347964 244 ILLSLGGLPPFLGFLPKWLVIqLMAELNHSYMITIM-VMMTLITLFYYLRV 293
Cdd:MTH00199 349 TFLSIAGIPPLAGFLSKWLIL-LSGVSSGYYLICIIaVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-299 1.25e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 1.25e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   15 ISGTLISISASSWLAVWMGLEINLLSFIPLMTNS-NNKMSTEASLKYFLVQALASAILLFSIILMHASTDMTIFMNYNIF 93
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKrKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   94 LT--------------LIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSLF--------- 150
Cdd:TIGR01770 192 LSngmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFgfseawqif 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  151 MSMVILFSIVIGSLGGLNQTSLRKLMAYSSINHLGW-MAAAMSMGENLW--VLYFLVYSFLTSALIFLFNTFQMFHINQS 227
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIkaVLFYIFIYALMSLGAFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 511347964  228 MITMNKF-------PLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFM 299
Cdd:TIGR01770 352 IEYISDFaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYF 430
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 17-293 2.30e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 91.84  E-value: 2.30e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  17 GTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMST---------EASLKYFLVQALASAILLFSIILMHASTDMTIF 87
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEGM 279

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  88 MNYNIFLTL----------------IMSTLLLKMGAAPFHFWFPGTMEGL-SWYNCLILMTWQKVAPLMLLSYVIKMSLF 150
Cdd:MTH00198 280 LGTILSATLettnielrqgslgylfITVAILFKLAAAPFHMWTPDVYEGApTPTTALIAIIPKFTVYILLTSLVITSKLL 359

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 151 MSMVILfSIVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMG-----ENLW--VLYFLVYSFLTSALIFLFNTFQMFH 223
Cdd:MTH00198 360 LSVAII-SLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWtyAVTYLVSALASFTVICTLEEFGTRT 438

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 224 INQS------------------MITMNKFPLLKFSLFSILLSLGGLPPFLGFLPKWLV------IQLMAELNHSYMITIM 279
Cdd:MTH00198 439 PTSRqrdgsfgnynlvrrlvdlTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIlvgsikIAFSSSLSIYYLVALF 518

                        330
                 ....*....|....*
gi 511347964 280 -VMMTLITLFYYLRV 293
Cdd:MTH00198 519 aIICTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 31-297 5.56e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 87.12  E-value: 5.56e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  31 WMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHAST---DMTIFMNY---------NIFLTLIM 98
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATgtlNMADLAARlaeldpgllLAAFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  99 STLLLKMGAAPFHFWFP---------------GTMEGLSWYncLILMTWQKVAPLMLLSYVikmSLFMSMVILFSIVIGS 163
Cdd:COG0651  213 VGFGIKAALFPLHFWLPdaypaapspvsallsGLLTKVGVY--AILRVLTLLFGADPALFL---GTLLLVLGLLTMLVGA 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 164 LGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENL---WVLYFLVYSFLTSALIFL--------FNTFQMFHINQSMITMn 232
Cdd:COG0651  288 LGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNHALAKALLFLaagaieraTGTRDLDKLGGLGKRM- 366

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 511347964 233 kfPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSA 297
Cdd:COG0651  367 --PLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-328 7.31e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 81.08  E-value: 7.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  34 LEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHAST---DMTIFMN-------YNIFLTLIMSTLLL 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTgtlNMADLAGalaenptVVTAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 104 KMGAAPFHFWFPGTMEGLSWY-NCLILMTWQKVAPLML---LSYVIKMSLFMSMVI--------LFSIVIGSLGGLNQTS 171
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVvTALLSGLVTKVAVYALiriYFTVFGGDFRFALGLgwllavlaLLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 172 LRKLMAYSSINHLGWMAAAMSMGENLWV----LYFLVYSFLTSALIFLFNTFQMFHINQSMITMNKF----PLLKFSLFS 243
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALaaglLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLgrrmPLTAAAFAV 374

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 244 ILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAFMLSYTEPKWIPKLQYKNIFIIQTMT 323
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAPKQEAPLGMLAPSLA 454


                 ....*
gi 511347964 324 LSTIS 328
Cdd:PRK08375 455 LALLS 459
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
53-293 3.68e-14

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 73.16  E-value: 3.68e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  53 STEASLKYFLVQALASAILLFSIILMHA----STDMTIFMNY---------NIFLTLIMSTLLLKMGAAPFHFWFPGTME 119
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSSLLYGlsggSTQLSAIALAlitspslglALALVFVIAGIAFKISAVPFHQWTPDVYE 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 120 GLSWYNCLILMTWQKVAPLMLLSYVIKMS----------LFMSMVILfSIVIGSLGGLNQTSLRKLMAYSSINHLGW--- 186
Cdd:PRK02504 239 GSPTPVVAFLSVGSKAAGFALAIRLLVTAfpsfdeqwklLFTALAIL-SMVLGNVVALAQTSMKRMLAYSSIGQAGFvmi 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 187 -MAAAMSMGENLWVLYFLVYSFLT---SALIFLFN----TFQmfhINQSMITMNKFPLLKFSLFSILLSLGGLPPFLGFL 258
Cdd:PRK02504 318 gLVAGTEAGYASMVFYLLAYLFMNlgaFACVILFSlrtgTDQ---ISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 511347964 259 PKwLVIQLMAELNHSYMITIMVMMT-LITLFYYLRV 293
Cdd:PRK02504 395 GK-IYLFWAGWQAGLYLLVLVGLVTsVISIYYYIRV 429
ndhB CHL00049
NADH dehydrogenase subunit 2
 53-293 5.68e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.57  E-value: 5.68e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  53 STEASLKYFLVQALASAILLFSIILMHA----------------STDMTIFMNYNIFLTLIMSTLLLKMGAAPFHFWFPG 116
Cdd:CHL00049 160 SNEATMKYLLMGGASSSILVYGFSWLYGlsggeielqeivngliNTQMYNSPGISIALIFITVGIGFKLSLAPFHQWTPD 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 117 TMEGLSWYNCLILMTWQKVAPLMLLSYVIKMS---------LFMSMVILFSIVIGSLGGLNQTSLRKLMAYSSINHLGWM 187
Cdd:CHL00049 240 VYEGSPTPVVAFLSVTSKVAASALATRIFDIPfyfssnewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYV 319

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 188 -----AAAMSMGENLWVLYFLVYSFL---TSALIFLFN----TFQmfhINQSMITMNKFPLLKFSLFSILLSLGGLPPFL 255
Cdd:CHL00049 320 iigiiVGDSNDGYASMITYMLFYIFMnlgTFACIVLFGlrtgTDN---IRDYAGLYTKDPFLALSLALCLLSLGGIPPLA 396

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 511347964 256 GFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRV 293
Cdd:CHL00049 397 GFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-299 1.46e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.96  E-value: 1.46e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  34 LEINLLSFIPLMTNSNNK-MSTEASLKYFLVQALASAILLFSIILMHASTDmTIFMNY-------------NIFLTLIMS 99
Cdd:PRK08376 150 LEIMSIASYALVAFRNDTwEAIEAGIKYMFVGSLASSMVLLGIALLYGQYG-TLNMAYlavkmsenptvvaKIALALFIA 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 100 TLLLKMGAAPFHFWFP-GTMEGLSWYNCLILMTwqKVAPLMLLSYV--------IKMSLFMSMVILF---SIVIGSLGGL 167
Cdd:PRK08376 229 GLAMKSGAVPVHMWLPdAYPAAPSSISAMLLVI--KQAGLYALARVlfsiygpaINLATVGWVIIILgclTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 168 NQTSLRKLMAYSSINHLGWMAAAMSMGENLW---------------VLYFLVYSFLTSALIFL-----FNTFQMFHINQS 227
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFLtagavIYETGTRNLNEL 386

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 511347964 228 MITMNKFPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNhSYMITIMVMMTLITLFYYLRVGFSAFM 299
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTAFF 457
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-298 2.01e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 58.44  E-value: 2.01e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  34 LEINLLSFIPL-MTNSNNKMSTEASLKYFLVQALASAILLFSIILMHAS------TDM-----------------TIFMN 89
Cdd:PRK12667 142 LEVLSISAYGLvAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATfgtlnmADLsakirglsfpltgglagNPPLA 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  90 YNIFLTLIMSTLLLKMGAAPFHFWFP---------------GTMEGLSWYNcLILMTWQKVAPLMLLSYVIKMSLFMSMV 154
Cdd:PRK12667 222 LGVALALALWAFTIKAAIFPNHFWLPdahpaapspvsamlsGLVVNVGAYA-IIRFLYTIFGISPSLIDFRAALSPILII 300

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 155 I-LFSIVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYS----------FLTS-ALIFLFNTFQMF 222
Cdd:PRK12667 301 LgAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksllFLASgVFIHAAGTRDID 380

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 511347964 223 HINQSMitmNKFPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAF 298
Cdd:PRK12667 381 ELAGLG---RKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLF 453
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
159-298 9.03e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 50.33  E-value: 9.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 159 IVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWV---LYFLVYSF-LTSALIFLFNTFQMFHINQSMITMN-- 232
Cdd:PRK12663 283 MVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngaIFYLVHDMvVKTALFLIAGSLVRLTGYRSLQYLGgl 362

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 511347964 233 --KFPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAF 298
Cdd:PRK12663 363 yrKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAY 430
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-318 1.10e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 50.20  E-value: 1.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   3 NNPAKLLFSSTLISGTLISISASSWLAVWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLF-SIILMHAS 81
Cdd:PRK06589 114 SSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpAVILIYTK 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  82 TDMTIFMNYNIF-------LTLIMSTLLLKMGAAPFHFWFPGTM-----------------EGLSWYNCLILMTWQkvap 137
Cdd:PRK06589 194 TGNLDFVSGGLFsknqsiiLLLMFIYGIAKTAIFPVHSWLPAAMvahypvsallhavivvkTGLFCIYKILLYIFG---- 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 138 LMLLSYVIKMSLFMSMVILFSIVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENL----WVLYFLVYSFLTSALI 213
Cdd:PRK06589 270 LSYLQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKalgaAILHLVSHSFAKICLF 349

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 214 FLFNTFQMF----HINQSMITMNKFPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIM----VMMTLI 285
Cdd:PRK06589 350 YSMGSIYSLkkedQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVmlvvIASSIL 429

                        330       340       350
                 ....*....|....*....|....*....|...
gi 511347964 286 TLFYYLRVGFSAFMLSYTEPKWIPKLQYKNIFI 318
Cdd:PRK06589 430 SALYLLKILSSIYKPSLSENSFITKSLPYLMQI 462
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
35-306 4.88e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 48.10  E-value: 4.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  35 EINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHAST------DMTIFMNYNIF-------LTLIMSTL 101
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTgtlnitDIHNALLVNPTspviyggLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 102 LLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKM-------SLFMSMVILFSI---VIGSLGGLNQTS 171
Cdd:PRK06277 210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLfgglsyfPSAQGVLIALSVlamVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 172 LRKLMAYSSINHLGWMAAAMSMGENLWV---LYFLVYSFLTSALIFLfntfqMFHINQSMITMNK-------FPLLKFSL 241
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagIFHAINHVIYKSALFL-----GAGIVSYRTKTSNlrklgglLPVMPVVA 364

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 511347964 242 FSILLS---LGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRvgfsAFMLSYTEPK 306
Cdd:PRK06277 365 FMVLCAklaISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMK----AFYLIYLKPK 428
PRK12650 PRK12650
DUF4040 family protein;
109-298 5.05e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.12  E-value: 5.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 109 PFHFWFPGTMEG---LSWYNCLILMTWQKVAPLM----LLSYVIKMSLFMSMVILFSIVIGSLGGLNQTSLRKLMAYSSI 181
Cdd:PRK12650 226 PFHFWLPEAMAAitpVSAFLHAAAVVKAGIYLLLrfspVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTV 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 182 NHLGWMAAAMSMGENL----WVLYFLVYSFLTSALIFLF-------NTFQMFHINQSMITMnkfPLLKFSLFSILLSLGG 250
Cdd:PRK12650 306 SQLGWIVATIGVGTPFaltaAVVHTLAHALFKSSLFMLIgvvdhqaGTRDIRRLGSLWRRM---PFTFVSVTIAALSMAA 382

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 511347964 251 LPPFLGFLPKWLVIQLMAE--LNHSYMITIMVMMTLITLF---YYLRVGFSAF 298
Cdd:PRK12650 383 VPPLFGFVSKEGMLTAFLEapGGNAGVVLLLVGAALGAVFtfaYSARLVLGAF 435
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 93-298 6.02e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.84  E-value: 6.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  93 FLTLImsTLLLKMGAA------PFHFWFPGTMEGLSWYNCLI-----------LMTwqKVAPLMLLSYVIkmSLFMSMVI 155
Cdd:COG1009  209 LLTLI--LLLLLLGAFgksaqfPLHFWLPDAMEGPTPVSALLhaatmvkagvyLLA--RLSPLFALSPVW--LTVVAIIG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 156 LFSIVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFL--------FNTFQMFHINQS 227
Cdd:COG1009  283 AITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLgagsvihaTGTRDIRKMGGL 362

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 511347964 228 MITMnkfPLLkFSLFSI-LLSLGGLPPFLGFLPKWLVIQLMAELNH-SYMITIMVMMT-LITLFYYLRVGFSAF 298
Cdd:COG1009  363 RKKM---PIT-AITFLIgALSLAGIPPFAGFFSKEAILEAALEAGGlGPLLLAVALLGaFLTAFYSFRLFFLVF 432
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-265 2.32e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.14  E-value: 2.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   3 NNPAKLLFSSTLISGTLISISASSWLAVWMGLEINLLSFIpLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHAST 82
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  83 DMTIFMNYN-------------IFLTLIMSTLLLKMGAAPFHFWFPGTME------------GLSWYNCLILMTWQKVAP 137
Cdd:PRK08668 175 GTFDFADISqglindtstgfalIVFLFLLAFGVAKAGIFPLHVWAPDAYSeapqsfsavlsgQLSKLGAYGFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 138 LMLLSY----VIKMSLFMSMVILF---SIVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWV---LYFLVYSF 207
Cdd:PRK08668 255 GTKLFSefgtYRGVPLFNYILAWLgniSIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFaggLFHVFNHA 334

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 511347964 208 LTSALIFLFNTFQMFHINQSMIT-----MNKFPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQ 265
Cdd:PRK08668 335 LFKGLFFLIFAAVIYRTGTTKISemgglIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFE 397
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 56-194 5.84e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 44.69  E-value: 5.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  56 ASLKYFLVQALASAILLFSIILM-----HASTDMTIFMNYNI---FLTLIMSTLLL----KMGAAPFHFWFP-------- 115
Cdd:COG1008  162 AAIKFFLYTLAGSLLMLVAILALyflagALTFDIAELAAAPLpltAQLLLFLAFFIafavKVPMFPFHTWLPdahveapt 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 116 -------GTMEGLSWYNCLILM------TWQKVAPLML-LSyvikmslfmsmviLFSIVIGSLGGLNQTSLRKLMAYSSI 181
Cdd:COG1008  242 agsvllaGVLLKMGGYGLLRFAlplfpeASAYFAPLLAaLG-------------VIGIIYGALVALAQTDLKRLIAYSSV 308

                        170
                 ....*....|...
gi 511347964 182 NHLGWMAAAMSMG 194
Cdd:COG1008  309 SHMGFVLLGIFAL 321
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 34-292 5.88e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 44.76  E-value: 5.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  34 LEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHASTDmTIFMNY-------------NIFLTLIMST 100
Cdd:PRK08377 137 MEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATG-TLNMAHiaqlagtidptvaQVGLALLIFG 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 101 LLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKM-------SLFMSMVI---LFSIVIGSLGGLNQT 170
Cdd:PRK08377 216 LAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLmqnangwSSVLKLVIimaTLTVFFAELSALRQK 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 171 SLRKLMAYSSINHLGWMAAAMSMGENLWV---LYFLVYSFLTSALIFLFNTFQMFHINQSMITM-----NKFPLLKFSLF 242
Cdd:PRK08377 296 NVKRMIAYSSIGQVGMIALALALGTQAGVdagVFHMINHAIVKALLFLAVGYVGITLGGTEIEKfeglgKRMPLTALALT 375

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 511347964 243 SILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLR 292
Cdd:PRK08377 376 IGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFR 425
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 93-288 7.59e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 43.71  E-value: 7.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  93 FLTLIMSTLLLKMGAAPFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLsyVIKMSLFMSMVILFSIVIGSLGGLNQTSL 172
Cdd:MTH00091  59 FGYFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL--LQFFSKNFFFLLLFGLLICFFQMFLLKSY 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 173 RKLMAYSSINHLGWMaaamsmgenlwvLYFLVYSFLTSALIFLFNTFQMFHInqsMITMNKFPLLKFSLFSILLSLGGLP 252
Cdd:MTH00091 137 KNLLILSSTESFNWL------------ILSFFFSFFNVFFLFFYYFLLMLFL---IPKFNNVNKLNFVSWETLLVFMNLP 201

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 511347964 253 PFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLF 288
Cdd:MTH00091 202 FSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLS 237
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 156-298 2.85e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 42.63  E-value: 2.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 156 LFSIVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENLWV---LYFLVYSFLTSALIFLFNTFQMF-----HINQS 227
Cdd:PRK07691 283 LLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMigaIYYLIHDMIVKAALFLLIGIMIKitgttDLKKM 362

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 511347964 228 MITMNKFPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRVGFSAF 298
Cdd:PRK07691 363 GGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGF 433
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 110-299 6.14e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 41.60  E-value: 6.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 110 FHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLsyvIKMSLFMSMVILFSIVIGSLG----------GLNQTSLRKLMAYS 179
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLL---IRSSPLFEQAPLALIIVTIVGsltvffaatvGLVQNDLKKVIAYS 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 180 SINHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLFNTFQMFHIN--QSMITMN---KFPLLKFSLFSI-LLSLGGLPP 253
Cdd:MTH00020 306 TCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSdeQDMRKMGgliSFLPLTYIFFLIgSLSLMGFPY 385

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 511347964 254 FLGFLPKWLVIQLMAELNH-SYMITIMVMMTLITLFYYLRVGFSAFM 299
Cdd:MTH00020 386 LTGFYSKDLILELAFGQYYlIFAYWLGCFSALLTAFYSIRLIYLTFL 432
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 40-263 7.65e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.44  E-value: 7.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  40 SFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHA---STDMTIFMNYNIFLT---LIMSTLLLKMGAA----- 108
Cdd:PRK12647 131 SFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNvtgTYSLSELLASGDVIRehpLYLAILLLVLGGAftksa 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 109 --PFHFWFPGTMEG---LSWYNCLILMTWQKVAPLMLLSYVI-KMSLFMSMVILF---SIVIGSLGGLNQTSLRKLMAYS 179
Cdd:PRK12647 211 qfPFHFWLPNAMEAptpVSAYLHSATMVKAGIYLLARLNPVLgGTPLWQTILPLFgglTMLTGALLAVRQTDLKLILAYS 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 180 SINHLGWMAAAMSMGENL----WVLYFLVYSFLTSALIFLFNTF----------QMFHINQSMitmnkfPLLKFSLFSIL 245
Cdd:PRK12647 291 TVSALGTLVMLLGLGSELaikaAVLFLVAHSLYKGALFMVAGIIdhetgtrditKLGGLRRAM------PITAAAALLAA 364

                        250
                 ....*....|....*...
gi 511347964 246 LSLGGLPPFLGFLPKWLV 263
Cdd:PRK12647 365 LSMAGLPPLFGFLAKELI 382
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-293 1.44e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.10  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  30 VWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMHAST-------------DMTIFMNYNIFLTL 96
Cdd:PRK12662 135 IYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITgtlnmgdmfliiqDLPTNRAIQIGVLF 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  97 IMSTLLLKMGAAPFHFW---------------FPGTMEGLSWYncLILMTWQKVAPLMLLSYVIKMSLFMSMVILFSIVI 161
Cdd:PRK12662 215 IMVGLFIKAALFPFHKWliqayseapsfisvfFSGTSTKVMIY--LIIRIVYDVFKANFVFTTLPFNNVFMILAALAIVF 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 162 GSLGGLNQTSLRKLMAYSSINHLGWMAAAMSM----GENLWVLYFLVYSFLTSALIFLFNT----FQMFHINQSMITMNK 233
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLntyyGLAAAVAYIVNHSIVKSALFMVSGSisyhFGTTKLEDCLNLWKS 372

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 234 FPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQLMAELNHSYMITIMVMMTLITLFYYLRV 293
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
109-298 2.61e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.62  E-value: 2.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 109 PFHFWFPGTMEGLSWYNCLILMTWQKVAPLMLLSYVIKMSLFMSMVILFSIVIGS----LGG---LNQTSLRKLMAYSSI 181
Cdd:PRK07376 245 PLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEQFPAVMTVIAWTGAitafLGAsiaLTQNDIKKGLAYSTI 324

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 182 NHLGWMAAAMSMGENLWVLYFLVYSFLTSALIFLfNTFQMFH-----------INQSMITM----NKFPLLKFSLFSILL 246
Cdd:PRK07376 325 SQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFL-GSGSVIHgmeevvghdpvLAQDMRLMgglrKYMPITAITFLIGCL 403

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 511347964 247 SLGGLPPFLGFLPKWLViqLMAELNHSYMITIMVMMTL-ITLFYYLRVGFSAF 298
Cdd:PRK07376 404 AISGIPPFAGFWSKDEI--LGAAFEANPALWFVGFLTAgMTAFYMFRMYFLTF 454
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 56-215 4.18e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 38.77  E-value: 4.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964   56 ASLKYFLVQALASAILLFSIILMHASTDMTIfmNYNIFLTLIMSTLL-------------LKMGAAPFHFWFPGTMEGLS 122
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGGTF--DLLELLNLPLPFGVqtwlflaffiafaVKVPLFPLHTWLPDAHVEAP 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  123 WYNCLILM-TWQKVAPLMLLSYVIKM----SLFMSMVI----LFSIVIGSLGGLNQTSLRKLMAYSSINHLGWM----AA 189
Cdd:TIGR01972 235 TAGSVILAgVLLKMGTYGFLRFNLPLfpdaSLYFAPVLaalgVIAIIYGALIALAQTDIKRLIAYSSISHMGFVllgiFS 314

                         170       180
                  ....*....|....*....|....*.
gi 511347964  190 AMSMGENLWVLYFLVYSFLTSALIFL 215
Cdd:TIGR01972 315 FNELGISGAVFQMISHGLITAALFLL 340
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 30-265 8.12e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 37.99  E-value: 8.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964  30 VWMGLEINLLSFIPLMTNSNNKMSTEASLKYFLVQALASAILLFSIILMH-ASTDMTIFMNYNIFLTLIM-------STL 101
Cdd:PRK06458 133 MWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTILVYaNAATVMGDGEMAILWTELLkhaslldPTL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 102 LL------------KMGAAPFHFWFPGT-MEGLSWYNCLILMTWQKVAPLMLLSYVIKMS----------LFMSMVILfS 158
Cdd:PRK06458 213 MKlafvflligfgtKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVALYAVLRYYILIDaaigsdfpgrLLLIFGLL-S 291

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511347964 159 IVIGSLGGLNQTSLRKLMAYSSINHLGWMAAAMSMGENL----WVLYFLVYSFLTSALIF-------LFNTFQMFHINQS 227
Cdd:PRK06458 292 VLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLgifaALLHMLNHSLTKSAIFFasgnvlqKYGTRDINVIRGL 371

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 511347964 228 MITMnkfPLLKFSLFSILLSLGGLPPFLGFLPKWLVIQ 265
Cdd:PRK06458 372 LKVS---PLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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