NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|511333630|gb|EGF86618|]
View 

hypothetical protein HMPREF0433_01421 [Gemella sanguinis M325]

Protein Classification

YdbT family protein( domain architecture ID 706656)

YdbT family protein, similar to Bacillus subtilis UPF0699 transmembrane protein YdbT, may contain a Pleckstrin Homology (PH) domain

PubMed:  15493994
SCOP:  3000134

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YdbS super family cl43859
Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain ...
 12-98 2.99e-06

Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


The actual alignment was detected with superfamily member COG3402:

Pssm-ID: 442629 [Multi-domain]  Cd Length: 143  Bit Score: 43.27  E-value: 2.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511333630  12 LPSRAVQYLRIHYGIYTIFLLLPVIgkcVFDYFTDEINYKFLGLSILTIVVIYYIVAsIIPPLVIKNYSYEVDEMGVSKV 91
Cdd:COG3402    1 LSPRAVKVWRLRALIGALILLAVLA---VLALLLDFPPWLGWVLLALVVVLAVLSLV-LAPPLRYRRWRYEVREDDLYIR 76


                 ....*..
gi 511333630  92 GGILYKR 98
Cdd:COG3402   77 RGVLFRR 83
 
Name Accession Description Interval E-value
YdbS COG3402
Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain ...
 12-98 2.99e-06

Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442629 [Multi-domain]  Cd Length: 143  Bit Score: 43.27  E-value: 2.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511333630  12 LPSRAVQYLRIHYGIYTIFLLLPVIgkcVFDYFTDEINYKFLGLSILTIVVIYYIVAsIIPPLVIKNYSYEVDEMGVSKV 91
Cdd:COG3402    1 LSPRAVKVWRLRALIGALILLAVLA---VLALLLDFPPWLGWVLLALVVVLAVLSLV-LAPPLRYRRWRYEVREDDLYIR 76


                 ....*..
gi 511333630  92 GGILYKR 98
Cdd:COG3402   77 RGVLFRR 83
 
Name Accession Description Interval E-value
YdbS COG3402
Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain ...
 12-98 2.99e-06

Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442629 [Multi-domain]  Cd Length: 143  Bit Score: 43.27  E-value: 2.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511333630  12 LPSRAVQYLRIHYGIYTIFLLLPVIgkcVFDYFTDEINYKFLGLSILTIVVIYYIVAsIIPPLVIKNYSYEVDEMGVSKV 91
Cdd:COG3402    1 LSPRAVKVWRLRALIGALILLAVLA---VLALLLDFPPWLGWVLLALVVVLAVLSLV-LAPPLRYRRWRYEVREDDLYIR 76


                 ....*..
gi 511333630  92 GGILYKR 98
Cdd:COG3402   77 RGVLFRR 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH