|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
38-260 |
1.79e-63 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 200.34 E-value: 1.79e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 38 GAALIPPSKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLL 117
Cdd:COG1173 49 AARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 118 LMVVLGTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMN 197
Cdd:COG1173 129 LAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIA 208
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 511278481 198 RAILAEAALSYLGLG-DPLSKSWGMIITRAMDfpniYLTEFWkWWLVYPVIFMVLMVLSIAIIG 260
Cdd:COG1173 209 SAILAEAGLSFLGLGvQPPTPSWGTMLSEGRN----YLLTAP-WLALFPGLAIVLTVLAFNLLG 267
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
39-245 |
2.12e-35 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 128.40 E-value: 2.12e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 39 AALIPPSKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLL 118
Cdd:PRK09881 65 ARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 119 MVVLGTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNR 198
Cdd:PRK09881 145 TMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGS 224
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 511278481 199 AILAEAALSYLGLG-DPLSKSWGMIITRAMDfpniYLTEFWkWWLVYP 245
Cdd:PRK09881 225 AILMAATLGFIGLGaQQPSAEWGAMVANGRN----YVLDQW-WYCAFP 267
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
41-268 |
3.74e-33 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 121.72 E-value: 3.74e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 41 LIPPSKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLLMV 120
Cdd:TIGR02790 35 LLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 121 VLGTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNRAI 200
Cdd:TIGR02790 115 AIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVI 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 511278481 201 LAEAALSYLGLG-DPLSKSWGMIITRAMDFPNIYLTEfwkwwLVYPVIFMVLMVLSIAIIGQKIEGKIG 268
Cdd:TIGR02790 195 LHIAGLSFLGLGiQPPTPEWGAMLSEAKQYIWTQPLL-----MIYPGLAILISVMAFNLLGDALRDHLG 258
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
70-234 |
1.60e-10 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 58.83 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 70 TIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLLMVVLGTFLGPSLK--------NIIFSIVLVS 141
Cdd:cd06261 4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglgLPALILALLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 142 WIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNRAILAEAALSYLGLGDPLSKSWGM 221
Cdd:cd06261 84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163
|
170
....*....|...
gi 511278481 222 IITRAMDFPNIYL 234
Cdd:cd06261 164 LLIFAILFPGDLG 176
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
85-259 |
7.55e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 48.45 E-value: 7.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 85 GSIIGMVAG-YFGGIFDEILLGIIDFFISVPDLLLMVVLGTFLGPS----LKNIIFSIVLVSWIMPAKITRSQILRMKQE 159
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSilghGILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 160 NYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNRAILAEAALSYLGLGDPLSkSWGMIITRAMDFPNIYltefwk 239
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLG-LLLIEAILGYDYPEIQ------ 153
|
170 180
....*....|....*....|
gi 511278481 240 wwlvYPVIFMVLMVLSIAII 259
Cdd:pfam00528 154 ----GPVLAAALILLLLNLL 169
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
38-260 |
1.79e-63 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 200.34 E-value: 1.79e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 38 GAALIPPSKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLL 117
Cdd:COG1173 49 AARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 118 LMVVLGTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMN 197
Cdd:COG1173 129 LAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIA 208
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 511278481 198 RAILAEAALSYLGLG-DPLSKSWGMIITRAMDfpniYLTEFWkWWLVYPVIFMVLMVLSIAIIG 260
Cdd:COG1173 209 SAILAEAGLSFLGLGvQPPTPSWGTMLSEGRN----YLLTAP-WLALFPGLAIVLTVLAFNLLG 267
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
39-245 |
2.12e-35 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 128.40 E-value: 2.12e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 39 AALIPPSKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLL 118
Cdd:PRK09881 65 ARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 119 MVVLGTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNR 198
Cdd:PRK09881 145 TMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGS 224
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 511278481 199 AILAEAALSYLGLG-DPLSKSWGMIITRAMDfpniYLTEFWkWWLVYP 245
Cdd:PRK09881 225 AILMAATLGFIGLGaQQPSAEWGAMVANGRN----YVLDQW-WYCAFP 267
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
41-268 |
3.74e-33 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 121.72 E-value: 3.74e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 41 LIPPSKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLLMV 120
Cdd:TIGR02790 35 LLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 121 VLGTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNRAI 200
Cdd:TIGR02790 115 AIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVI 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 511278481 201 LAEAALSYLGLG-DPLSKSWGMIITRAMDFPNIYLTEfwkwwLVYPVIFMVLMVLSIAIIGQKIEGKIG 268
Cdd:TIGR02790 195 LHIAGLSFLGLGiQPPTPEWGAMLSEAKQYIWTQPLL-----MIYPGLAILISVMAFNLLGDALRDHLG 258
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
38-260 |
9.95e-29 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 110.14 E-value: 9.95e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 38 GAALIPPSKEHWFGTDDLGIDIFSEICYGAKSTI--ILSCSSALFAAvgGSIIGMVAGYFGGIFDEILLGIIDFFISVPD 115
Cdd:PRK10417 37 PSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLgsVMACLLLVLAL--GLVIGGSAGLLGGRVDQATMRVADMFMTFPT 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 116 LLLMVVLGTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKL 195
Cdd:PRK10417 115 SILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLD 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 511278481 196 MNRAILAEAALSYLGLG-DPLSKSWGMIITRAMDFpniylteFWK--WWLVYPVIFMVLMVLSIAIIG 260
Cdd:PRK10417 195 IGHMMLHVAGLSFLGLGvTAPTAEWGVMINDARQY-------IWTqpLLMFWPGLALFISVMAFNLLG 255
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
39-260 |
1.28e-26 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 105.25 E-value: 1.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 39 AALIPP------SKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFIS 112
Cdd:PRK10913 64 ALLAPPvwqeggSWAHILGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 113 VPDLLLMVVLGTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSV 192
Cdd:PRK10913 144 LPSLLLALVLVAIFGPSIVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQA 223
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 193 IKLMNRAILAEAALSYLGLG-DPLSKSWGMIITRAMDFPNIyltefwKWWLV-YPVIFMVLMVLSIAIIG 260
Cdd:PRK10913 224 SLGFSNAILDMAALGFLGMGaQPPTPEWGTMLSDVLQFAQS------AWWVVtFPGLAILLTVLAFNLMG 287
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
48-260 |
1.70e-25 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 102.22 E-value: 1.70e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 48 HWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLLMVVLGTFLG 127
Cdd:PRK15406 82 HYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFG 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 128 PSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNRAILAEAALS 207
Cdd:PRK15406 162 QNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLS 241
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 511278481 208 YLGLG--DPLSkSWGMIITRAMDFpniylTEFWKWWLVYPVIFMVLMVLSIAIIG 260
Cdd:PRK15406 242 FLGLGtqEPLS-SWGALLSDGANS-----MEVSPWLLLFPAGFLVVTLFCFNFIG 290
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
44-226 |
7.18e-24 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 97.88 E-value: 7.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 44 PSKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLLMVVLG 123
Cdd:PRK15082 76 PSLQHWFGVDSLGRDIFSRILVGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVV 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 124 TFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNRAILAE 203
Cdd:PRK15082 156 AILGSGMANVIIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITA 235
|
170 180
....*....|....*....|....
gi 511278481 204 AALSYLGLG-DPLSKSWGMIITRA 226
Cdd:PRK15082 236 ASLSFLGLGaQPPTPEWGAMLNEA 259
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
43-260 |
7.44e-21 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 90.21 E-value: 7.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 43 PPSKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLLMVVL 122
Cdd:COG4239 116 PPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYLLIIL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 123 GTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHfwkqffsII---MMSVIK----L 195
Cdd:COG4239 196 SSIFQPSFWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRH-------ILpnaMVATLTflpfI 268
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 511278481 196 MNRAILAEAALSYLGLGDPL-SKSWGMIITRAMDfpNIYltefwKWWLVYPVIF-MVLMVLSIAIIG 260
Cdd:COG4239 269 LSGAITTLTSLDFLGFGLPPgSPSLGELLAQGKN--NLQ-----APWLGLSAFVvLALMLSLLVFIG 328
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
43-263 |
1.32e-18 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 83.88 E-value: 1.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 43 PPSKEHWFGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLLMVVL 122
Cdd:PRK15021 116 PPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 123 GTFLGPSLKNIIFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNRAILA 202
Cdd:PRK15021 196 SSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITT 275
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 511278481 203 EAALSYLGLGDPL-SKSWGMIITRAMDfpniyltEFWKWWLVYPVIFMVLMVLSIAI-IGQKI 263
Cdd:PRK15021 276 LTSLDFLGFGLPLgSPSLGELLLQGKN-------NLQAPWLGITAFLSVAILLSLLIfIGEAV 331
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
38-263 |
2.73e-18 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 82.44 E-value: 2.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 38 GAALIPPSKEHW------FGTDDLGIDIFSEICYGAKSTIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFI 111
Cdd:PRK15111 60 GYQLLPPSWSRYgevsffLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 112 SVPDLLLMVVLGTFLGPSLKNIIFSIVLVswIMPaKITRSQILRMKQE---NYIKIAKIYGAGFIHLFLWHFWKQFFSII 188
Cdd:PRK15111 140 SIPSLLLAIIVVAFAGPSLSHAMFAVWLA--LLP-RMVRSIYSAVHDElekEYVIAARLDGASTLNILWYAVLPNITAGL 216
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 511278481 189 MMSVIKLMNRAILAEAALSYLGLGDPL-SKSWGMIITRAMDFpnIYLTefwKWWLVYPVIFMVLMVLSIAIIGQKI 263
Cdd:PRK15111 217 VTEITRALSMAILDIAALGFLDLGAQLpSPEWGAMLGDSLEL--IYVA---PWTVMLPGAAIMLSVLLVNLLGDGI 287
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
70-234 |
1.60e-10 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 58.83 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 70 TIILSCSSALFAAVGGSIIGMVAGYFGGIFDEILLGIIDFFISVPDLLLMVVLGTFLGPSLK--------NIIFSIVLVS 141
Cdd:cd06261 4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglgLPALILALLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 142 WIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNRAILAEAALSYLGLGDPLSKSWGM 221
Cdd:cd06261 84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163
|
170
....*....|...
gi 511278481 222 IITRAMDFPNIYL 234
Cdd:cd06261 164 LLIFAILFPGDLG 176
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
85-259 |
7.55e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 48.45 E-value: 7.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 85 GSIIGMVAG-YFGGIFDEILLGIIDFFISVPDLLLMVVLGTFLGPS----LKNIIFSIVLVSWIMPAKITRSQILRMKQE 159
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSilghGILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 160 NYIKIAKIYGAGFIHLFLWHFWKQFFSIIMMSVIKLMNRAILAEAALSYLGLGDPLSkSWGMIITRAMDFPNIYltefwk 239
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLG-LLLIEAILGYDYPEIQ------ 153
|
170 180
....*....|....*....|
gi 511278481 240 wwlvYPVIFMVLMVLSIAII 259
Cdd:pfam00528 154 ----GPVLAAALILLLLNLL 169
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
70-212 |
3.82e-06 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 47.37 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 70 TIILSCSSALFAAVGGSIIGMVAGYF-GGIFDEILLGIIDFFISVPD----LLLMVVLGTFLG---------------PS 129
Cdd:COG0601 98 TLELALLALLLALLIGIPLGILAALRrGSWLDRLITVLALLGISIPSfwlgLLLILLFAVKLGwlpvsgrvspwedflDA 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511278481 130 LKNII---FSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWK----QFFSIIMMSVIKLMNRAILA 202
Cdd:COG0601 178 LRHLIlpaLTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRnaliPVVTVLGLQLGGLLGGAVVV 257
|
170
....*....|
gi 511278481 203 EAALSYLGLG 212
Cdd:COG0601 258 ETVFSWPGLG 267
|
|
|