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Conserved domains on  [gi|51104461|gb|AAT96886|]
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cytochrome b, partial (mitochondrion) [Myrmoborus myotherinus]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 678.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00119  49 GLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00119 129 FVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00119 209 PLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00119 289 LGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFP 368

                        330
                 ....*....|..
gi 51104461  321 IVGALENKMLNL 332
Cdd:MTH00119 369 LLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 678.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00119  49 GLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00119 129 FVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00119 209 PLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00119 289 LGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFP 368

                        330
                 ....*....|..
gi 51104461  321 IVGALENKMLNL 332
Cdd:MTH00119 369 LLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-326 4.20e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 351.01  E-value: 4.20e-120
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYlyKE----TWNTGVILLLSL 76
Cdd:COG1290  57 GIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLT 134

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  77 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLIHLTFLHE 155
Cdd:COG1290 135 MAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHR 214

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461 156 TGSNNPLGI----PSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAY 231
Cdd:COG1290 215 HGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFY 292

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461 232 AILRSIP--NKLGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVehPFIIIGQLASL 309
Cdd:COG1290 293 GILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTV 370

                       330
                ....*....|....*..
gi 51104461 310 TYFTILLVLFPIVGALE 326
Cdd:COG1290 371 TYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-159 1.01e-76

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 233.80  E-value: 1.01e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSY--LYKETWNTGVILLLSLMA 78
Cdd:cd00284  40 GVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMA 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGS 158
Cdd:cd00284 120 TAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199


                .
gi 51104461 159 N 159
Cdd:cd00284 200 S 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-157 3.62e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 208.78  E-value: 3.62e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461     1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYG--SYLYKETWNTGVILLLSLMA 78
Cdd:pfam00033  31 GVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMS 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 51104461    79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETG 157
Cdd:pfam00033 111 TAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 192-278 8.19e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.81  E-value: 8.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   192 LMSLAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALATSVLILFLIPFLHKSKQRTMTF- 270
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFr 125


                  ....*...
gi 51104461   271 RPLSQLMF 278
Cdd:TIGR01156 126 RPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 678.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00119  49 GLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00119 129 FVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00119 209 PLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00119 289 LGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFP 368

                        330
                 ....*....|..
gi 51104461  321 IVGALENKMLNL 332
Cdd:MTH00119 369 LLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-331 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 619.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00131  48 GLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00131 128 FVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00131 208 PLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00131 288 LGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMP 367

                        330
                 ....*....|.
gi 51104461  321 IVGALENKMLN 331
Cdd:MTH00131 368 LAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 606.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00100  48 GLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00100 128 FMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00100 208 PSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNK 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00100 288 LGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMP 367

                        330
                 ....*....|
gi 51104461  321 IVGALENKML 330
Cdd:MTH00100 368 IASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 592.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00074  49 GLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00074 129 FVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00074 209 PTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00074 289 LGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIP 368

                        330
                 ....*....|..
gi 51104461  321 IVGALENKMLNL 332
Cdd:MTH00074 369 LTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-321 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 566.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00191  45 GLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00191 125 FLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNN 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00191 205 PLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNK 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00191 285 LGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364


                 .
gi 51104461  321 I 321
Cdd:MTH00191 365 L 365
CYTB MTH00156
cytochrome b; Provisional
 1-319 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 555.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00156  38 GLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATA 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00156 118 FLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNN 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00156 198 PLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLF 319
Cdd:MTH00156 278 LGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-331 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 541.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00034  48 GIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00034 128 FVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00034 208 PTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNK 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00034 288 LGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFP 367

                        330
                 ....*....|.
gi 51104461  321 IVGALENKMLN 331
Cdd:MTH00034 368 LISYLENKLIF 378
CYTB MTH00145
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 538.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00145  49 GLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00145 129 FLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00145 209 PLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLfP 320
Cdd:MTH00145 289 LGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-P 367

                        330
                 ....*....|
gi 51104461  321 IVGALENKML 330
Cdd:MTH00145 368 LVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-330 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 509.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00016  49 GLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00016 129 FLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00016 209 PLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLvLFP 320
Cdd:MTH00016 289 LGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFM-INP 367

                        330
                 ....*....|
gi 51104461  321 IVGALENKML 330
Cdd:MTH00016 368 LLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-332 5.06e-165

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 464.95  E-value: 5.06e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00053  49 GIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00053 129 FIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00053 209 PIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00053 289 LGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMP 368

                        330
                 ....*....|..
gi 51104461  321 IVGALENKMLNL 332
Cdd:MTH00053 369 LAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-331 1.54e-164

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 463.40  E-value: 1.54e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00022  47 GCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00022 127 FMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNN 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00022 207 PIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNK 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLFP 320
Cdd:MTH00022 287 LGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIP 366

                        330
                 ....*....|.
gi 51104461  321 IVGALENKMLN 331
Cdd:MTH00022 367 LLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-331 3.69e-153

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 434.73  E-value: 3.69e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00224  49 GLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00224 129 FLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00224 209 PIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTiLLVLFP 320
Cdd:MTH00224 289 LGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISP 367

                        330
                 ....*....|.
gi 51104461  321 IVGALENKMLN 331
Cdd:MTH00224 368 AISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-327 6.75e-126

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 365.80  E-value: 6.75e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00033  45 GVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00033 125 FIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNE 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILF--FPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 238
Cdd:MTH00033 205 PLGLVGLSDRTAFHVYFTIKDILGFLILFgvFVIIGIEPRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIP 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  239 NKLGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPV-EHPFIIIGQLASLTYFTILLV 317
Cdd:MTH00033 285 NKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364

                        330
                 ....*....|
gi 51104461  318 LFPIVGALEN 327
Cdd:MTH00033 365 LVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-326 4.20e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 351.01  E-value: 4.20e-120
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYlyKE----TWNTGVILLLSL 76
Cdd:COG1290  57 GIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLT 134

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  77 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLIHLTFLHE 155
Cdd:COG1290 135 MAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHR 214

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461 156 TGSNNPLGI----PSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAY 231
Cdd:COG1290 215 HGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFY 292

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461 232 AILRSIP--NKLGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTWVGSQPVehPFIIIGQLASL 309
Cdd:COG1290 293 GILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTV 370

                       330
                ....*....|....*..
gi 51104461 310 TYFTILLVLFPIVGALE 326
Cdd:COG1290 371 TYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-319 6.17e-106

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 313.80  E-value: 6.17e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00086  37 GTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEA 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00086 117 FMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTS 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSDCDKIPFHPYFSSKDILGFMILFFpLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00086 197 SLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNK 275

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 51104461  241 LGGVLALATSVLILFLIPFLHKSkqrTMTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTYFTILLVLF 319
Cdd:MTH00086 276 VLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-319 1.21e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.83  E-value: 1.21e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKETWNTGVILLLSLMATA 80
Cdd:MTH00046  39 GVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEA 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGSNN 160
Cdd:MTH00046 119 FLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSN 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  161 PLGIPSD-CDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00046 199 PLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINS 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  240 KLGGvLALATSVLILFLIPFLHKSKqrtmTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLASLTyFTILLVLF 319
Cdd:MTH00046 279 KIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL-MVLLLFIF 352
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-159 1.01e-76

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 233.80  E-value: 1.01e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSY--LYKETWNTGVILLLSLMA 78
Cdd:cd00284  40 GVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMA 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETGS 158
Cdd:cd00284 120 TAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199


                .
gi 51104461 159 N 159
Cdd:cd00284 200 S 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-157 3.62e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 208.78  E-value: 3.62e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461     1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYG--SYLYKETWNTGVILLLSLMA 78
Cdd:pfam00033  31 GVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMS 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 51104461    79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLIHLTFLHETG 157
Cdd:pfam00033 111 TAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 160-307 6.21e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 175.91  E-value: 6.21e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461 160 NPLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 51104461 240 KLGGVLALATSVLILFLIPFLHKSKQRTmTFRPLSQLMFWSLVSNLLILTWVGSQPVEHPFIIIGQLA 307
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
211-311 2.71e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.94  E-value: 2.71e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   211 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALATSVLILFLIPFLHKSKQRTMTFRPLSQLMFWSLVSNLLILTW 290
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 51104461   291 VGSQPVEHPFIIIGQLASLTY 311
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
41-206 1.03e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 153.17  E-value: 1.03e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    41 SLFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLSLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 118
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   119 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSSKDILGFMILFFPLMSLAM 197
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 51104461   198 FSPNLLGDP 206
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-162 7.77e-34

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 124.05  E-value: 7.77e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLSLMA 78
Cdd:PRK03735  59 GMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVG 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLIHLTFLHETG 157
Cdd:PRK03735 139 LGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQG 218


                 ....*
gi 51104461  158 SNNPL 162
Cdd:PRK03735 219 ISGPL 223
petB CHL00070
cytochrome b6
 1-162 1.07e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 115.59  E-value: 1.07e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461    1 GLLMAMHYTADITLAFSSVAHTCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLSLMA 78
Cdd:CHL00070  51 GFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVS 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLIHLTFLHETG 157
Cdd:CHL00070 131 FGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQG 210


                 ....*
gi 51104461  158 SNNPL 162
Cdd:CHL00070 211 ISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 182-278 6.69e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.41  E-value: 6.69e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461  182 ILGfmiLFFPLMSLAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALATSVLILFLIPFLH 261
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                         90
                 ....*....|....*...
gi 51104461  262 K-SKQRTMTFRPLSQLMF 278
Cdd:CHL00058 116 NvNKFQNPFRRPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 189-292 4.43e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 63.27  E-value: 4.43e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461 189 FFPLMSLAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALATSVLILFLIPFLHKSKQRTM 268
Cdd:COG5679  49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQN 123

                        90       100
                ....*....|....*....|....*
gi 51104461 269 TF-RPLSQLMFwsLVSNLLILtWVG 292
Cdd:COG5679 124 PFrRPVATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 192-278 8.19e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.81  E-value: 8.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51104461   192 LMSLAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALATSVLILFLIPFLHKSKQRTMTF- 270
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFr 125


                  ....*...
gi 51104461   271 RPLSQLMF 278
Cdd:TIGR01156 126 RPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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