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Conserved domains on  [gi|510594041|emb|CCV55453|]
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putative phosphate transport system permease [Yersinia enterocolitica (type O:3) str. YE12/03]

Protein Classification

phosphate ABC transporter permease subunit PstC( domain architecture ID 10793554)

phosphate ABC transporter permease subunit PstC is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter for phosphate; ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment; the captured solute is delivered to a gated translocation pathway formed by the two TMs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
pstC PRK11275
phosphate ABC transporter permease PstC;
1-318 0e+00

phosphate ABC transporter permease PstC;


:

Pssm-ID: 183070  Cd Length: 319  Bit Score: 588.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   1 MADYKPTIKAPSQYGDIIFSALVKLAALITLFLLGGIIVSLIIASWPSIEKFGWAFLWTKEWDAPAEQFGALVPIYGTVV 80
Cdd:PRK11275   1 MAATKPAFNAPGKKGDIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  81 TSVIALLIAVPVSFGIALFLTELAPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFAPLFARYFQEPVGNVMSGIPIVGVL 160
Cdd:PRK11275  81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGAL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
Cdd:PRK11275 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510594041 241 ETMAVTFIIGNTYHLDSFSLFMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLALSKLMISRLAKKEGR 318
Cdd:PRK11275 241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGA 318
 
Name Accession Description Interval E-value
pstC PRK11275
phosphate ABC transporter permease PstC;
1-318 0e+00

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 588.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   1 MADYKPTIKAPSQYGDIIFSALVKLAALITLFLLGGIIVSLIIASWPSIEKFGWAFLWTKEWDAPAEQFGALVPIYGTVV 80
Cdd:PRK11275   1 MAATKPAFNAPGKKGDIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  81 TSVIALLIAVPVSFGIALFLTELAPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFAPLFARYFQEPVGNVMSGIPIVGVL 160
Cdd:PRK11275  81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGAL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
Cdd:PRK11275 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510594041 241 ETMAVTFIIGNTYHLDSFSLFMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLALSKLMISRLAKKEGR 318
Cdd:PRK11275 241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGA 318
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 9-317 9.52e-119

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 343.61  E-value: 9.52e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   9 KAPSQYGDIIFSALVKLAALITLFLLGGIIVSLIIASWPSIEKFG-WAFLWTKEWD--APAEQFGALVPIYGTVVTSVIA 85
Cdd:COG0573   10 RRRRRLGDRLFRGLLLLAALLSILILLLIVLFLLIESLPAFQEVGlLEFLTGTEWNpvSSNGEFGILPLIVGTLLVSLIA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  86 LLIAVPVSFGIALFLTELAPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFAPLFARYFQepvgnvmsgipivgvlfsGPA 165
Cdd:COG0573   90 LLIAVPLGLGIAIFLSEYAPPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRDLFP------------------WPP 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 166 FGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAV 245
Cdd:COG0573  152 SGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAV 231

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 510594041 246 TFIIGNTYHLdSFSLFMPGNSITSALANEFAEAE-SGLHTAALMELGLILFVITFIVLALSKLMISRLAKKEG 317
Cdd:COG0573  232 LMVAGNAPQI-PFSLFDPGRTLTALIALEFGEAPfGSLHYSALFALGLVLFVITLLVNLLARLIVRRYREKYG 303
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 16-311 3.90e-92

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 276.07  E-value: 3.90e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   16 DIIFSALVKLAALITLFLLGGIIVSLIIASWPSIEKFG-WAFLWTKEWDAPA----EQFGALVPIYGTVVTSVIALLIAV 90
Cdd:TIGR02138   1 EKIFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEKNGiLNFLTGTVWDPGSgpvqEQYGALPLIVGTLITSLIALLIAV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   91 PVSFGIALFLTELAPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFAPLFARYFQEPVGNVMSGIPivgvlfsgpAFGIGI 170
Cdd:TIGR02138  81 PVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSNLGLIP---------LFGGPI 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIG 250
Cdd:TIGR02138 152 LTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIG 231

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 510594041  251 NTYHLDSFSLFMPGNSITSALANEFAEAESG-LHTAALMELGLILFVITFIVLALSKLMISR 311
Cdd:TIGR02138 232 NVFPISPLSLFDPGTTITSLIANQFGEASGGsVHTSALFALGLVLFVITLLVNILARYIVRR 293
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 75-251 1.61e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.99  E-value: 1.61e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  75 IYGTVVTSVIALLIAVPVSFGIALFLTELaPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFaplfaryfqepvgnvmsgi 154
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF------------------- 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 155 pivGVLFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLG 234
Cdd:cd06261   61 ---GVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137

                        170
                 ....*....|....*..
gi 510594041 235 LGRALGETMAVTFIIGN 251
Cdd:cd06261  138 FARALGEFALVSFLGGG 154
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 154-252 3.92e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.44  E-value: 3.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  154 IPIVGVLFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVML 233
Cdd:pfam00528  36 AILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLAL 115

                          90
                  ....*....|....*....
gi 510594041  234 GLGRALGETMAVTFIIGNT 252
Cdd:pfam00528 116 AFGGALGGAVLLEFLGSWP 134
 
Name Accession Description Interval E-value
pstC PRK11275
phosphate ABC transporter permease PstC;
1-318 0e+00

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 588.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   1 MADYKPTIKAPSQYGDIIFSALVKLAALITLFLLGGIIVSLIIASWPSIEKFGWAFLWTKEWDAPAEQFGALVPIYGTVV 80
Cdd:PRK11275   1 MAATKPAFNAPGKKGDIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  81 TSVIALLIAVPVSFGIALFLTELAPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFAPLFARYFQEPVGNVMSGIPIVGVL 160
Cdd:PRK11275  81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGAL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
Cdd:PRK11275 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 510594041 241 ETMAVTFIIGNTYHLDSFSLFMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLALSKLMISRLAKKEGR 318
Cdd:PRK11275 241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGA 318
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 9-317 9.52e-119

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 343.61  E-value: 9.52e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   9 KAPSQYGDIIFSALVKLAALITLFLLGGIIVSLIIASWPSIEKFG-WAFLWTKEWD--APAEQFGALVPIYGTVVTSVIA 85
Cdd:COG0573   10 RRRRRLGDRLFRGLLLLAALLSILILLLIVLFLLIESLPAFQEVGlLEFLTGTEWNpvSSNGEFGILPLIVGTLLVSLIA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  86 LLIAVPVSFGIALFLTELAPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFAPLFARYFQepvgnvmsgipivgvlfsGPA 165
Cdd:COG0573   90 LLIAVPLGLGIAIFLSEYAPPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRDLFP------------------WPP 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 166 FGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAV 245
Cdd:COG0573  152 SGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAV 231

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 510594041 246 TFIIGNTYHLdSFSLFMPGNSITSALANEFAEAE-SGLHTAALMELGLILFVITFIVLALSKLMISRLAKKEG 317
Cdd:COG0573  232 LMVAGNAPQI-PFSLFDPGRTLTALIALEFGEAPfGSLHYSALFALGLVLFVITLLVNLLARLIVRRYREKYG 303
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 16-311 3.90e-92

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 276.07  E-value: 3.90e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   16 DIIFSALVKLAALITLFLLGGIIVSLIIASWPSIEKFG-WAFLWTKEWDAPA----EQFGALVPIYGTVVTSVIALLIAV 90
Cdd:TIGR02138   1 EKIFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEKNGiLNFLTGTVWDPGSgpvqEQYGALPLIVGTLITSLIALLIAV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   91 PVSFGIALFLTELAPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFAPLFARYFQEPVGNVMSGIPivgvlfsgpAFGIGI 170
Cdd:TIGR02138  81 PVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSNLGLIP---------LFGGPI 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIG 250
Cdd:TIGR02138 152 LTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIG 231

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 510594041  251 NTYHLDSFSLFMPGNSITSALANEFAEAESG-LHTAALMELGLILFVITFIVLALSKLMISR 311
Cdd:TIGR02138 232 NVFPISPLSLFDPGTTITSLIANQFGEASGGsVHTSALFALGLVLFVITLLVNILARYIVRR 293
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 29-315 2.86e-38

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 136.32  E-value: 2.86e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  29 ITLFLLGGIIVSLIIASWPSIekfGWAFLwTKEWDAPAEQFGALVPIYGTVVTSVIALLIAVPVSFGIALFLTELAP-NW 107
Cdd:COG0581    1 LALLPLVWILGTVLVKGLPAL---SWEFL-TSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARgGR 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 108 LKRPLGVAIELLAAIPSIVYGmwgLFVFApLFARYFQepvgnvmsgipivgvlfsgpaFGIGILAAGVILAIMIIPYIAA 187
Cdd:COG0581   77 LARLIRFAIDVLAGVPSIVYG---LFGYA-LFVLTLG---------------------LGFSLLAGALALALLMLPVVIR 131

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 188 VMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNTYHLdSFSLFMPGNSI 267
Cdd:COG0581  132 TTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFL-PLSLFDPFATL 210

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 510594041 268 TSALANEFAEA-ESGLHTAALMELGLILFVITFIVLAlsKLMISRLAKK 315
Cdd:COG0581  211 PVHIYNLASSPyPAAQELAWAAALVLLLLVLLLNLLA--RLLRRRFRKK 257
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 16-314 2.73e-28

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 110.02  E-value: 2.73e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   16 DIIFSALVKLAALITLFLLGGIIVSLIIASWPSIekfGWAFLwTKEWDAPAEQFGALVPIYGTVVTSVIALLIAVPVSFG 95
Cdd:TIGR00974   1 DKIFTFISLLSALLALLPLIWILWYILIKGLPAL---NLEFF-TKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIG 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   96 IALFLTELA-PNWLKRPLGVAIELLAAIPSIVYGMWGLFVFaplfaryfqepvgnvmsgipiVGVLFSGpafGIGILAAG 174
Cdd:TIGR00974  77 AAIYLAEYAnGSRFTKIIRFAVDILAGVPSIVVGLFGYGFF---------------------VLTYLGG---GFSLLAGA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  175 VILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNTYH 254
Cdd:TIGR00974 133 LALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAF 212

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  255 LdSFSLFMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLALSKLMISRLAK 314
Cdd:TIGR00974 213 T-PPNLFDPFATLPVLIYNLASEGPYVEAQQLAWAAALVLIVLVLLLNLIARLLRRRFKK 271
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 24-314 2.33e-13

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 69.01  E-value: 2.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  24 KLAALITLFLLGGIIVSLIIASWPSIEKFGWAFLWTKEWDApaeqfGALVPIYGTVVTSVIALLIAVPVSFGIALFLTEL 103
Cdd:COG0555   10 GLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSP-----RVLAALKLSLGTALIAALINLVFGLPLAWVLVRY 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 104 aPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFAP--LFARYFQepvgnvmsgipivgvlfsgpAFGIGIL--AAGVILAI 179
Cdd:COG0555   85 -RFPGKRLVDALVDLPFALPTAVAGIALLLLFGPngWLGQLLA--------------------PLGIKVAftPLGIVLAQ 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 180 MII--PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNtyhlds 257
Cdd:COG0555  144 TFVslPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGN------ 217

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 510594041 258 fslfMPGNSITSALAnEFAEAESGLHTAAlMELGLILFVITFIVLALSKLMISRLAK 314
Cdd:COG0555  218 ----LPMKTEILPLL-IYLKLEEGDYAGA-TAIALVLLLISFLLLLLINLLQRRSRR 268
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 75-251 1.61e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.99  E-value: 1.61e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  75 IYGTVVTSVIALLIAVPVSFGIALFLTELaPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFaplfaryfqepvgnvmsgi 154
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF------------------- 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 155 pivGVLFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLG 234
Cdd:cd06261   61 ---GVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137

                        170
                 ....*....|....*..
gi 510594041 235 LGRALGETMAVTFIIGN 251
Cdd:cd06261  138 FARALGEFALVSFLGGG 154
COG4590 COG4590
ABC-type uncharacterized transport system, permease component [General function prediction ...
 208-315 1.31e-09

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443647 [Multi-domain]  Cd Length: 757  Bit Score: 59.09  E-value: 1.31e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 208 GCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNTYHLDsFSLFMPGNSITSALANEFAEAESG-LHTAA 286
Cdd:COG4590  646 GATPWQTLTRVVLLTASPGIFSAVMIGLGRAVGETMIVLMATGNTPVMD-FNIFEGMRTLSANIAVEMPESEVGsTHYRV 724

                         90       100
                 ....*....|....*....|....*....
gi 510594041 287 LMELGLILFVITFIVLALSKLMISRLAKK 315
Cdd:COG4590  725 LFLAALVLFVFTFVFNTLAEIVRQRLRKK 753
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
25-311 1.44e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 58.63  E-value: 1.44e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  25 LAALITLFLLGGIIVSLIIASWPSIEKFGWAFLWtkeWDAPAEQFGALVPIYGTVVTSVIALLIAVPVSFGIAlFLTELA 104
Cdd:COG1178  293 LCLLLVLLGLLLPLLALLLWSLTKALDDNLTLDN---YRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLA-YLVRRR 368

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 105 PNWLKRPLGVAIELLAAIPSIVYGMwGLFVFaplFARYFqepvgnvmsgipivGVLFSGPAFGIgILAagviLAIMIIPY 184
Cdd:COG1178  369 RGRLARLLDRLAMLPYAVPGIVLGL-GLLLL---FNRPL--------------PLLLYGTLAIL-VLA----YVVRFLPF 425

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 185 IAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGEtmavtfiigntyhLDSFSLFMPG 264
Cdd:COG1178  426 ALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKE-------------LSATLLLRPP 492

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 510594041 265 NSITSALA-NEFAEAESgLHTAALMelGLILFVITFIVLALSKLMISR 311
Cdd:COG1178  493 GFETLAVLiYQLASSGR-YGEAAAL--ALLLVLVSLLPVLLLERLLGR 537
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 20-315 1.79e-08

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 54.35  E-value: 1.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  20 SALVKLAALITLFLLGGIIVSLIIAS-----WPSIEKFGWAFLWTKE-WDAPAEQFGALVPIYGTVVTSVIALLIAVPVS 93
Cdd:COG1177    6 RLLLRLFLALVLLFLYLPILVLVLYSfndswFLTFPPEGFTLRWYAElFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  94 FGIALFltelaPNWLKRPLGVAIELLAAIPSIVYGMwGLFVFaplfaryfqepvgnvMSGIPIVGVLFsgpafgigilaa 173
Cdd:COG1177   86 LALARY-----RFRGRRLLLALLLLPLVVPGIVLGV-ALLLL---------------FSALGLSGGLW------------ 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 174 GVILA--IMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGN 251
Cdd:COG1177  133 GLILAhvVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGP 212

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 510594041 252 TYhlDSFSLFMpgnsitsalaneFAEAESGLhTAALMELGLILFVITFIVLALSKLMISRLAKK 315
Cdd:COG1177  213 GV--TTLPVYI------------YSMIRRGI-SPEINALSTLLILLSLLLLLLAERLRRRGERR 261
pstA PRK11268
phosphate ABC transporter permease PstA;
57-247 2.11e-08

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 54.69  E-value: 2.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  57 LWTKEWDAPAEQFGALV-PIYGTVVTSVIALLIAVPVSFGIALFLTELAP-NWLKRPLGVAIELLAAIPSIVYGmwgLFV 134
Cdd:PRK11268  64 LFTEMTPPPNTAGGGLAnAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRkSWLAEVIRFINDILLSAPSIVVG---LFV 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 135 FAPLFARYFQepvgnvmsgipivgvlFSGPAfgiGILAagviLAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEV 214
Cdd:PRK11268 141 YTIVVAQMEH----------------FSGWA---GVIA----LALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKM 197

                        170       180       190
                 ....*....|....*....|....*....|...
gi 510594041 215 IWRIVLPFTKNGVIGGVMLGLGRALGETMAVTF 247
Cdd:PRK11268 198 ISAITLKASVSGIMTGVLLAIARIAGETAPLLF 230
cysT CHL00187
sulfate transport protein; Provisional
 15-256 1.30e-07

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 51.55  E-value: 1.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  15 GDIIFSALVKLAALITLFLLGGIIVSLIIASWPSIEKFGWAFLWTKEWDAPAEQFGALvpiygTVVTSVIALLIAVPVSF 94
Cdd:CHL00187   2 GDFNFSLKFSSIYIISLSYIIFLLVLPILALLIKASQQPWSDFLQKATEPIALSAYSL-----TLSMALIAALINGFFGL 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  95 GIALFLTElAPNWLKRPLGVAIELLAAIPSIVYGMWGLFVFAPlfaryfQEPVGNVMSGIPIVgVLFSgpafgigilAAG 174
Cdd:CHL00187  77 LIAWVLVR-YNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGD------NGWIGHLLSHLGIQ-IVFT---------KLG 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 175 VILAIMII--PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNT 252
Cdd:CHL00187 140 VLLAMIFVsfPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNI 219


                 ....
gi 510594041 253 YHLD 256
Cdd:CHL00187 220 PFKD 223
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 53-253 6.38e-07

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 49.32  E-value: 6.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041   53 GWAFLWTKEWDaPAEQFGALVPIYGTVVTSVIALLIAVPVSFGIALFLTELapnwlKRPLGVAIELLAAIPSIVYGMWGL 132
Cdd:TIGR01581   6 GGSHILSALTD-PENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPL-----KKLLDTLLDLPMVLPPLVAGLALL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  133 FVFAPLfaryfqEPVGNVMSGIpIVGVLFSgpafgigilAAGVILAIMII--PYIAAVMRDVFEQTPVMMKESAYGIGCT 210
Cdd:TIGR01581  80 LLFGRN------GLLGPYLEAA-GIQVIFS---------TLGVVLAQTFVasPYYVRVARSTFKSVDPRYEDVARSLGAG 143

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 510594041  211 TWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNTY 253
Cdd:TIGR01581 144 PLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMFAGSIQ 186
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
171-251 6.39e-06

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 47.06  E-value: 6.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIG 250
Cdd:PRK10971 141 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAG 220


                 .
gi 510594041 251 N 251
Cdd:PRK10971 221 N 221
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 154-252 3.92e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.44  E-value: 3.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  154 IPIVGVLFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVML 233
Cdd:pfam00528  36 AILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLAL 115

                          90
                  ....*....|....*....
gi 510594041  234 GLGRALGETMAVTFIIGNT 252
Cdd:pfam00528 116 AFGGALGGAVLLEFLGSWP 134
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
25-311 5.94e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 44.38  E-value: 5.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  25 LAALITLFLLGGIIVSLIIASWPSIEKFGWAFLWTKEWDApaeqfgalvpIYGTVVTSVIALLIAVPVSFGIAlFLTELA 104
Cdd:COG1178   16 LALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRA----------LGNTLLLALLVTLLSLLLGVPLA-WLLART 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 105 PNWLKRPLGVAIELLAAIPSIV--YGMWGLFVFAPLFARYFQEPVGNVMSGIpivgvlfsgpafgIGILAAGVILAIMII 182
Cdd:COG1178   85 DFPGRRLLRWLLLLPLALPPYVvaLAWIALFGPNGLLNTLLRALFGLEPPDI-------------YGLGGIILVLVLFNY 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 183 PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGEtMAVTFIIGNTYhldsfslfm 262
Cdd:COG1178  152 PYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLAD-FGTPLVLGGGY--------- 221

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 510594041 263 pgNSITSALANEFAeAESGLHTAALmeLGLILFVITFIVLALSKLMISR 311
Cdd:COG1178  222 --TTLTTAIYQAWL-GDFDLGAAAA--LALVLLLLVLLLLLLERRLRRR 265
modB PRK09421
molybdate ABC transporter permease subunit;
178-317 2.02e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 41.83  E-value: 2.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 178 AIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNtyhlds 257
Cdd:PRK09421 100 AVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATITFVSN------ 173

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 510594041 258 fslfMPGNSITSALA-NEFAEAESGlhTAALMELGLILFVITFIVLALSKLMISRLAKKEG 317
Cdd:PRK09421 174 ----IPGETQTIPSAmYTLIQTPGG--ESAAARLCIISIAIALASLLLSEWLARRSRKRLG 228
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 25-317 4.47e-04

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 41.29  E-value: 4.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  25 LAALITLFLLGGIIVSLIIASWPSIekFGWAFLWTKEWDAPAEQFGALV--PIYGTV---------VTSVIALLIAVPVS 93
Cdd:COG1176   14 LLLPALLWLLLFFVLPLLLLLVYSF--TTRDPYGGVVPGFTLENYARLFtdPLYLKVllrtlwialLTTLICLLLGYPIA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  94 FGIALfltelAPNWLKRPLGVAIELLAAIPSIV--YGMWGLFVFAPLFARYFQePVGNVMSGIPIvgvLFSGPAFGIGIL 171
Cdd:COG1176   92 YFLAR-----APPRWRNLLLLLVILPFWTSFLVrtYAWIVLLGRNGLLNSLLL-ALGLIDEPLRL---LYTEFAVVIGLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 172 AagVILAIMIIPYIAAvmrdvFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGEtMAVTFIIGN 251
Cdd:COG1176  163 Y--VYLPFMVLPLYAA-----LEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGA-FVTPALLGG 234

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 510594041 252 TYHLdsfslfmpgnSITSALANEFAEAeSGLHTAALMelGLILFVITFIVLALSKLMISRLAKKEG 317
Cdd:COG1176  235 GKVL----------MIGNLIYQQFLSA-LNWPLAAAL--AVVLLLIVLLVLLLYLRLLRRRRLLGG 287
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 139-239 1.08e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.75  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041 139 FARYFQEPVGNVMSGIPIVGVLfsgP----AFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEV 214
Cdd:COG0600   93 LLRRLLDPLLVFLRPIPPLALA---PllilWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQI 169

                         90       100
                 ....*....|....*....|....*
gi 510594041 215 IWRIVLPFTKNGVIGGVMLGLGRAL 239
Cdd:COG0600  170 LRKVVLPAALPYIFTGLRIALGLAW 194
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 78-221 4.97e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 37.75  E-value: 4.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 510594041  78 TVVTSVIALLIAVPVSFGIALFLTeLAPNWLKRPLGVAIELLAAIPSIVYgmwgLFVFaplfarYFqepvgnvmsGIPIV 157
Cdd:COG0765   22 TLLLTVLAIVLGLVLGLLLALARL-SPNPVLRWLATAYVEFFRGTPLLVQ----LFFI------YF---------GLPLL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 510594041 158 GVLFSGpafgigILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLP 221
Cdd:COG0765   82 GIDLSP------FVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILP 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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