|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-231 |
5.43e-170 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 472.85 E-value: 5.43e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00119 34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLV 264
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-231 |
1.13e-88 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 267.04 E-value: 1.13e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYlyKE- 79
Cdd:COG1290 42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 80 ---TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 155
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 156 MITGLVLIHLTFLHESGSNNPLGI----PSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNllGDPENFTPANPLV 231
Cdd:COG1290 200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-174 |
6.02e-85 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 250.75 E-value: 6.02e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSY--LYK 78
Cdd:cd00284 25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIT 158
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184
|
170
....*....|....*.
gi 50981619 159 GLVLIHLTFLHESGSN 174
Cdd:cd00284 185 VIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-172 |
1.71e-73 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 221.10 E-value: 1.71e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYG--SYLYK 78
Cdd:pfam00033 16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIT 158
Cdd:pfam00033 96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175
|
170
....*....|....
gi 50981619 159 GLVLIHLTFLHESG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-231 |
5.43e-170 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 472.85 E-value: 5.43e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00119 34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLV 264
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-231 |
1.29e-154 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 434.08 E-value: 1.29e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00131 33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAA 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00131 193 TILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLV 263
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-231 |
1.25e-152 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 428.05 E-value: 1.25e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00156 23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAM 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00156 183 VMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLV 253
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-231 |
1.38e-150 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 423.71 E-value: 1.38e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00074 34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGA 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00074 194 SIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLV 264
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-230 |
7.27e-150 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 421.74 E-value: 7.27e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00100 33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITAL 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPL 230
Cdd:MTH00100 193 AMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPL 262
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-231 |
5.75e-145 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 408.92 E-value: 5.75e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00191 30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAAL 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00191 190 SLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLV 260
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-231 |
4.78e-142 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 401.98 E-value: 4.78e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00145 34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGL 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00145 194 SVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMV 264
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-231 |
8.05e-136 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 386.34 E-value: 8.05e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00016 34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAAL 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00016 194 SMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLV 264
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-231 |
3.10e-132 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 377.12 E-value: 3.10e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00034 33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAAL 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00034 193 SIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLV 263
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-231 |
5.13e-112 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 326.11 E-value: 5.13e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00224 34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGA 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00224 194 TILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLV 264
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-231 |
4.03e-110 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 321.26 E-value: 4.03e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00022 32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFL 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00022 192 VIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLV 262
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-231 |
1.19e-108 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 317.42 E-value: 1.19e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00053 34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGL 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00053 194 ALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLV 264
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-231 |
1.13e-88 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 267.04 E-value: 1.13e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYlyKE- 79
Cdd:COG1290 42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 80 ---TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 155
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 156 MITGLVLIHLTFLHESGSNNPLGI----PSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNllGDPENFTPANPLV 231
Cdd:COG1290 200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-231 |
6.81e-87 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 262.18 E-value: 6.81e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00033 30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGL 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFS--PNLLGDPENFTPANPLV 231
Cdd:MTH00033 190 VLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLV 262
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-174 |
6.02e-85 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 250.75 E-value: 6.02e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSY--LYK 78
Cdd:cd00284 25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIT 158
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184
|
170
....*....|....*.
gi 50981619 159 GLVLIHLTFLHESGSN 174
Cdd:cd00284 185 VIVILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-231 |
3.90e-81 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 246.39 E-value: 3.90e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKET 80
Cdd:MTH00086 22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGL 160
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVL 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 161 VLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGfMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00086 182 VLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMM 251
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-172 |
1.71e-73 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 221.10 E-value: 1.71e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYG--SYLYK 78
Cdd:pfam00033 16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMIT 158
Cdd:pfam00033 96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175
|
170
....*....|....
gi 50981619 159 GLVLIHLTFLHESG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-231 |
2.09e-64 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 203.68 E-value: 2.09e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 2 GSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKETW 81
Cdd:MTH00046 25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 82 NTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFMITGLV 161
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50981619 162 LIHLTFLHESGSNNPLGIPSN-CDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:MTH00046 185 VVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLV 255
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
56-221 |
4.59e-46 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 150.85 E-value: 4.59e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 56 SFFFICIYLHIARGLYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 133
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 134 GGFSVDNPTLTRFFALHF-LLPFMITGLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLAL 212
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 50981619 213 FSPNLLGDP 221
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-177 |
4.02e-35 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 124.44 E-value: 4.02e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKE- 79
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 80 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMI 157
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170 180
....*....|....*....|
gi 50981619 158 TGLVLIHLTFLHESGSNNPL 177
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-177 |
2.12e-31 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 114.43 E-value: 2.12e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 1 FGSLLGICLTTQILTGLLLATHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIARGLYYGSYLYKE- 79
Cdd:CHL00070 36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50981619 80 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMI 157
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195
|
170 180
....*....|....*....|
gi 50981619 158 TGLVLIHLTFLHESGSNNPL 177
Cdd:CHL00070 196 AVFMLMHFLMIRKQGISGPL 215
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
175-231 |
2.86e-13 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 64.97 E-value: 2.86e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 50981619 175 NPLGIPSNCDKIPFHPYFSLKDLLGFMIMLLLLTTLALFSPNLLGDPENFTPANPLV 231
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLA 57
|
|
|