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Conserved domains on  [gi|50897840|sp|P14991|]
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RecName: Full=Replication-associated protein; Short=Rep; AltName: Full=40.8 kDa protein; AltName: Full=Protein C1

Protein Classification

Gemini_AL1 and Gemini_AL1_M domain-containing protein( domain architecture ID 10466668)

Gemini_AL1 and Gemini_AL1_M domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gemini_AL1 pfam00799
Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein ...
 7-119 3.74e-68

Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.


:

Pssm-ID: 366313  Cd Length: 113  Bit Score: 209.71  E-value: 3.74e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50897840     7 FRIQAKNIFLTYPQCSLSKEEALEQIQGIQLSSNKKYIKIARELHEDGQPHLHVLLQLEGKVQITNIRLFDLVSPTRSAH 86
Cdd:pfam00799   1 FRIQAKNIFLTYPQCSLSKEEALTQIQKLQTNTNKKYIKIARELHEDGEPHLHVLLQLEKKFRITDLRFFDIVSPTRSAH 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 50897840    87 FHPNIQGAKSSSDVKSYVDKDGDTIEWGEFQID 119
Cdd:pfam00799  81 FHPNIQGAKSSSDVRSYVDKDGDTIEWGTFQID 113
Gemini_AL1_M pfam08283
Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep ...
 126-231 2.34e-59

Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep proteins.


:

Pssm-ID: 285483  Cd Length: 107  Bit Score: 187.04  E-value: 2.34e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50897840   126 GQQTANDSYAKAL-NATSLEQALQILKEEQPKDYFLQHHNLLNNAQKIFQRAPDPWTPLFPLSSFTNVPEEMQEWADAYF 204
Cdd:pfam08283   1 GQKTAKDEYAKAIiNATSKEEYLQIIQEELPKDWVLQHHNIENNADKIFPEAPEPFVPPFPLSSFTNLPEEMQDWVDDYF 80

                          90       100
                  ....*....|....*....|....*..
gi 50897840   205 GVDAAARPLRYNSIIVEGDSRTGKTMW 231
Cdd:pfam08283  81 GVVSAARPMRPKSIIVEGESRTGKTMW 107
 
Name Accession Description Interval E-value
Gemini_AL1 pfam00799
Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein ...
 7-119 3.74e-68

Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.


Pssm-ID: 366313  Cd Length: 113  Bit Score: 209.71  E-value: 3.74e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50897840     7 FRIQAKNIFLTYPQCSLSKEEALEQIQGIQLSSNKKYIKIARELHEDGQPHLHVLLQLEGKVQITNIRLFDLVSPTRSAH 86
Cdd:pfam00799   1 FRIQAKNIFLTYPQCSLSKEEALTQIQKLQTNTNKKYIKIARELHEDGEPHLHVLLQLEKKFRITDLRFFDIVSPTRSAH 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 50897840    87 FHPNIQGAKSSSDVKSYVDKDGDTIEWGEFQID 119
Cdd:pfam00799  81 FHPNIQGAKSSSDVRSYVDKDGDTIEWGTFQID 113
Gemini_AL1_M pfam08283
Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep ...
 126-231 2.34e-59

Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep proteins.


Pssm-ID: 285483  Cd Length: 107  Bit Score: 187.04  E-value: 2.34e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50897840   126 GQQTANDSYAKAL-NATSLEQALQILKEEQPKDYFLQHHNLLNNAQKIFQRAPDPWTPLFPLSSFTNVPEEMQEWADAYF 204
Cdd:pfam08283   1 GQKTAKDEYAKAIiNATSKEEYLQIIQEELPKDWVLQHHNIENNADKIFPEAPEPFVPPFPLSSFTNLPEEMQDWVDDYF 80

                          90       100
                  ....*....|....*....|....*..
gi 50897840   205 GVDAAARPLRYNSIIVEGDSRTGKTMW 231
Cdd:pfam08283  81 GVVSAARPMRPKSIIVEGESRTGKTMW 107
 
Name Accession Description Interval E-value
Gemini_AL1 pfam00799
Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein ...
 7-119 3.74e-68

Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.


Pssm-ID: 366313  Cd Length: 113  Bit Score: 209.71  E-value: 3.74e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50897840     7 FRIQAKNIFLTYPQCSLSKEEALEQIQGIQLSSNKKYIKIARELHEDGQPHLHVLLQLEGKVQITNIRLFDLVSPTRSAH 86
Cdd:pfam00799   1 FRIQAKNIFLTYPQCSLSKEEALTQIQKLQTNTNKKYIKIARELHEDGEPHLHVLLQLEKKFRITDLRFFDIVSPTRSAH 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 50897840    87 FHPNIQGAKSSSDVKSYVDKDGDTIEWGEFQID 119
Cdd:pfam00799  81 FHPNIQGAKSSSDVRSYVDKDGDTIEWGTFQID 113
Gemini_AL1_M pfam08283
Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep ...
 126-231 2.34e-59

Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep proteins.


Pssm-ID: 285483  Cd Length: 107  Bit Score: 187.04  E-value: 2.34e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50897840   126 GQQTANDSYAKAL-NATSLEQALQILKEEQPKDYFLQHHNLLNNAQKIFQRAPDPWTPLFPLSSFTNVPEEMQEWADAYF 204
Cdd:pfam08283   1 GQKTAKDEYAKAIiNATSKEEYLQIIQEELPKDWVLQHHNIENNADKIFPEAPEPFVPPFPLSSFTNLPEEMQDWVDDYF 80

                          90       100
                  ....*....|....*....|....*..
gi 50897840   205 GVDAAARPLRYNSIIVEGDSRTGKTMW 231
Cdd:pfam08283  81 GVVSAARPMRPKSIIVEGESRTGKTMW 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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