NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|508776594|gb|EOY23850|]
View 

Ubiquitin-specific protease 9 isoform 1 [Theobroma cacao]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 1000871)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

CATH:  3.90.70.10
EC:  3.4.19.12
Gene Ontology:  GO:0016579|GO:0046872|GO:0003723

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
88-914 1.83e-150

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 465.13  E-value: 1.83e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  88 ERPGPIDNSDIvqngsdCDCKENEIQLRrmLMEGQDYVLVPQGVWEKLHEWY-KGGPALPRKMILQGVYHRKFdVEVYPL 166
Cdd:COG5560   67 GSPGPIVQGPI------VDFEPESLKKS--LREGIDYSIISGAVWQLLVRWYgLAGLITPRITVLLPSESAPE-VESYPV 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 167 RLKL-----IDSRD--ESQSIIWIS--RKASVAVLFQKVCALRGIEQDKARIWdYFNKQKHGQLFVSNKSVEESNLQMDQ 237
Cdd:COG5560  138 VFKLhwlfsINGSLinLGHDPVPHSasSHGTLRDLSERVMNAFVDPSDDFRLW-DVVPEIMGLRLGLDSFFRRYRVLASD 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 238 DILLEQvdghhssrfgmdstgneLALVSLEPSRSSLTIAggPTMSNGhssgyrsnlypgsslsSGLNDIDDGFDAYNSVR 317
Cdd:COG5560  217 GRVLHP-----------------LTRLELFEDRSVLLLS--KITRNP----------------DWLVDSIVDDHNRSINK 261
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 318 KGekgGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLKD-YSDEINTENPLGMHGELALAFGELLRKLWSSGRIAIAPRA 396
Cdd:COG5560  262 EA---GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDeYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSG 338
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 397 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE---MKDSDGRPDEEVAAECWRNHKARNDSVIVDVC 473
Cdd:COG5560  339 FKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSkpdLSPGDDVVVKKKAKECWWEHLKRNDSIITDLF 418
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 474 QGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTITRAMTVTVFSGDGNglPLPYTVSVLKNGFCKDLLLALGTACCLKSD 553
Cdd:COG5560  419 QGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGR--RQPLKIELDASSTIRGLKKLVDAEYGKLGC 496
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 554 ENLLLAEVYENKIYRYLdTPLEPLIS--IKDDEHIVAFRIQKKGmgktklvIFHRWQEKSTSDYLKSgAEIFGTPLVTYl 631
Cdd:COG5560  497 FEIKVMCIYYGGNYNML-EPADKVLLqdIPQTDFVYLYETNDNG-------IEVPVVHLRIEKGYKS-KRLFGDPFLQL- 566
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 632 gegqpsgadietavsKVLSPfkrmyssakahigkenGFLSDGLDEQCSSSDVQpVENGERE---GTSSMDLSI------- 701
Cdd:COG5560  567 ---------------NVLIK----------------ASIYDKLVKEFEELLVL-VEMKKTDvdlVSEQVRLLReesspss 614
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 702 -LLLLTDDRVMNFKAFKKDTLFESGQIIRVVLDWTEKE-QELYDASYLKDIPEVHKAgftakktrQEAISLSSCLDAFLM 779
Cdd:COG5560  615 wLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRyLSLFSYDPLWTIREIGAA--------ERTITLQDCLNEFSK 686
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 780 EEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIHNLDLSKYVMNKDGQTYVYEL 859
Cdd:COG5560  687 PEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDL 766
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 508776594 860 YAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYKR 914
Cdd:COG5560  767 YAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
88-914 1.83e-150

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 465.13  E-value: 1.83e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  88 ERPGPIDNSDIvqngsdCDCKENEIQLRrmLMEGQDYVLVPQGVWEKLHEWY-KGGPALPRKMILQGVYHRKFdVEVYPL 166
Cdd:COG5560   67 GSPGPIVQGPI------VDFEPESLKKS--LREGIDYSIISGAVWQLLVRWYgLAGLITPRITVLLPSESAPE-VESYPV 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 167 RLKL-----IDSRD--ESQSIIWIS--RKASVAVLFQKVCALRGIEQDKARIWdYFNKQKHGQLFVSNKSVEESNLQMDQ 237
Cdd:COG5560  138 VFKLhwlfsINGSLinLGHDPVPHSasSHGTLRDLSERVMNAFVDPSDDFRLW-DVVPEIMGLRLGLDSFFRRYRVLASD 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 238 DILLEQvdghhssrfgmdstgneLALVSLEPSRSSLTIAggPTMSNGhssgyrsnlypgsslsSGLNDIDDGFDAYNSVR 317
Cdd:COG5560  217 GRVLHP-----------------LTRLELFEDRSVLLLS--KITRNP----------------DWLVDSIVDDHNRSINK 261
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 318 KGekgGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLKD-YSDEINTENPLGMHGELALAFGELLRKLWSSGRIAIAPRA 396
Cdd:COG5560  262 EA---GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDeYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSG 338
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 397 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE---MKDSDGRPDEEVAAECWRNHKARNDSVIVDVC 473
Cdd:COG5560  339 FKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSkpdLSPGDDVVVKKKAKECWWEHLKRNDSIITDLF 418
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 474 QGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTITRAMTVTVFSGDGNglPLPYTVSVLKNGFCKDLLLALGTACCLKSD 553
Cdd:COG5560  419 QGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGR--RQPLKIELDASSTIRGLKKLVDAEYGKLGC 496
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 554 ENLLLAEVYENKIYRYLdTPLEPLIS--IKDDEHIVAFRIQKKGmgktklvIFHRWQEKSTSDYLKSgAEIFGTPLVTYl 631
Cdd:COG5560  497 FEIKVMCIYYGGNYNML-EPADKVLLqdIPQTDFVYLYETNDNG-------IEVPVVHLRIEKGYKS-KRLFGDPFLQL- 566
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 632 gegqpsgadietavsKVLSPfkrmyssakahigkenGFLSDGLDEQCSSSDVQpVENGERE---GTSSMDLSI------- 701
Cdd:COG5560  567 ---------------NVLIK----------------ASIYDKLVKEFEELLVL-VEMKKTDvdlVSEQVRLLReesspss 614
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 702 -LLLLTDDRVMNFKAFKKDTLFESGQIIRVVLDWTEKE-QELYDASYLKDIPEVHKAgftakktrQEAISLSSCLDAFLM 779
Cdd:COG5560  615 wLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRyLSLFSYDPLWTIREIGAA--------ERTITLQDCLNEFSK 686
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 780 EEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIHNLDLSKYVMNKDGQTYVYEL 859
Cdd:COG5560  687 PEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDL 766
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 508776594 860 YAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYKR 914
Cdd:COG5560  767 YAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
760-913 4.71e-54

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 187.49  E-value: 4.71e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 760 AKKTRQEAISLSSCLDAFLMEEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIH 839
Cdd:cd02674   76 SGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLN 155
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 508776594 840 NLDLSKYVMNKDGQT-YVYELYAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYK 913
Cdd:cd02674  156 DLDLTPYVDTRSFTGpFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
325-509 1.38e-48

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 174.94  E-value: 1.38e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  325 AGLQNLGNTCFMNSALQCLVHTPPLVEYFLKDYSDeiNTENPLGMHGELALAFGELLRKLWS-SGRIAIAPRAFKGKLAR 403
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPL--SEDSRYNKDINLLCALRDLFKALQKnSKSSSVSPKMFKKSLGK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  404 FAPQFSGYNQHDSQELLAFLLDGLHEDLNrvkqkpyiemkdsdgrpdeevaaecwRNHKARNDSVIVDVCQGQYKSTLVC 483
Cdd:pfam00443  79 LNPDFSGYKQQDAQEFLLFLLDGLHEDLN--------------------------GNHSTENESLITDLFRGQLKSRLKC 132
                         170       180
                  ....*....|....*....|....*.
gi 508776594  484 PVCSKISITFDPFMYLSLPLPSTITR 509
Cdd:pfam00443 133 LSCGEVSETFEPFSDLSLPIPGDSAE 158
DUSP smart00695
Domain in ubiquitin-specific proteases;
38-153 4.88e-26

Domain in ubiquitin-specific proteases;


Pssm-ID: 197831  Cd Length: 88  Bit Score: 102.44  E-value: 4.88e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594    38 NLKEGNLYFVISSRWFRRWERYVGMDADENvignqssdsrhlngassvvaerPGPIDNSDIvqngsdcDCKENEIQLRRM 117
Cdd:smart00695   1 PLEEGLTWYLISTRWYRQWADFVEGKDGKD----------------------PGPIDNSGI-------LCSHGGPRLKEH 51
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 508776594   118 LMEGQDYVLVPQGVWEKLHEWYKGGPA-LPRKMILQG 153
Cdd:smart00695  52 LVEGEDYVLIPEELWNKLVRWYGGGPGpIPRKVVCQG 88
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
88-914 1.83e-150

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 465.13  E-value: 1.83e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  88 ERPGPIDNSDIvqngsdCDCKENEIQLRrmLMEGQDYVLVPQGVWEKLHEWY-KGGPALPRKMILQGVYHRKFdVEVYPL 166
Cdd:COG5560   67 GSPGPIVQGPI------VDFEPESLKKS--LREGIDYSIISGAVWQLLVRWYgLAGLITPRITVLLPSESAPE-VESYPV 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 167 RLKL-----IDSRD--ESQSIIWIS--RKASVAVLFQKVCALRGIEQDKARIWdYFNKQKHGQLFVSNKSVEESNLQMDQ 237
Cdd:COG5560  138 VFKLhwlfsINGSLinLGHDPVPHSasSHGTLRDLSERVMNAFVDPSDDFRLW-DVVPEIMGLRLGLDSFFRRYRVLASD 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 238 DILLEQvdghhssrfgmdstgneLALVSLEPSRSSLTIAggPTMSNGhssgyrsnlypgsslsSGLNDIDDGFDAYNSVR 317
Cdd:COG5560  217 GRVLHP-----------------LTRLELFEDRSVLLLS--KITRNP----------------DWLVDSIVDDHNRSINK 261
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 318 KGekgGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLKD-YSDEINTENPLGMHGELALAFGELLRKLWSSGRIAIAPRA 396
Cdd:COG5560  262 EA---GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDeYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSG 338
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 397 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE---MKDSDGRPDEEVAAECWRNHKARNDSVIVDVC 473
Cdd:COG5560  339 FKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSkpdLSPGDDVVVKKKAKECWWEHLKRNDSIITDLF 418
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 474 QGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTITRAMTVTVFSGDGNglPLPYTVSVLKNGFCKDLLLALGTACCLKSD 553
Cdd:COG5560  419 QGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGR--RQPLKIELDASSTIRGLKKLVDAEYGKLGC 496
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 554 ENLLLAEVYENKIYRYLdTPLEPLIS--IKDDEHIVAFRIQKKGmgktklvIFHRWQEKSTSDYLKSgAEIFGTPLVTYl 631
Cdd:COG5560  497 FEIKVMCIYYGGNYNML-EPADKVLLqdIPQTDFVYLYETNDNG-------IEVPVVHLRIEKGYKS-KRLFGDPFLQL- 566
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 632 gegqpsgadietavsKVLSPfkrmyssakahigkenGFLSDGLDEQCSSSDVQpVENGERE---GTSSMDLSI------- 701
Cdd:COG5560  567 ---------------NVLIK----------------ASIYDKLVKEFEELLVL-VEMKKTDvdlVSEQVRLLReesspss 614
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 702 -LLLLTDDRVMNFKAFKKDTLFESGQIIRVVLDWTEKE-QELYDASYLKDIPEVHKAgftakktrQEAISLSSCLDAFLM 779
Cdd:COG5560  615 wLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRyLSLFSYDPLWTIREIGAA--------ERTITLQDCLNEFSK 686
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 780 EEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIHNLDLSKYVMNKDGQTYVYEL 859
Cdd:COG5560  687 PEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDL 766
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 508776594 860 YAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYKR 914
Cdd:COG5560  767 YAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
760-913 4.71e-54

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 187.49  E-value: 4.71e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 760 AKKTRQEAISLSSCLDAFLMEEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIH 839
Cdd:cd02674   76 SGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLN 155
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 508776594 840 NLDLSKYVMNKDGQT-YVYELYAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYK 913
Cdd:cd02674  156 DLDLTPYVDTRSFTGpFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
325-509 1.38e-48

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 174.94  E-value: 1.38e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  325 AGLQNLGNTCFMNSALQCLVHTPPLVEYFLKDYSDeiNTENPLGMHGELALAFGELLRKLWS-SGRIAIAPRAFKGKLAR 403
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPL--SEDSRYNKDINLLCALRDLFKALQKnSKSSSVSPKMFKKSLGK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  404 FAPQFSGYNQHDSQELLAFLLDGLHEDLNrvkqkpyiemkdsdgrpdeevaaecwRNHKARNDSVIVDVCQGQYKSTLVC 483
Cdd:pfam00443  79 LNPDFSGYKQQDAQEFLLFLLDGLHEDLN--------------------------GNHSTENESLITDLFRGQLKSRLKC 132
                         170       180
                  ....*....|....*....|....*.
gi 508776594  484 PVCSKISITFDPFMYLSLPLPSTITR 509
Cdd:pfam00443 133 LSCGEVSETFEPFSDLSLPIPGDSAE 158
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
761-912 7.34e-46

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 167.23  E-value: 7.34e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  761 KKTRQEAISLSSCLDAFLMEEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGRYLKNKIDTFVNFPIhN 840
Cdd:pfam00443 155 DSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFPL-E 233
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 508776594  841 LDLSKYVMNKDGQ----TYVYELYAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNES-DIKTSAAYLLFY 912
Cdd:pfam00443 234 LDLSRYLAEELKPktnnLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEEtAVLSSSAYILFY 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
765-913 1.81e-35

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 135.30  E-value: 1.81e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 765 QEAISLSSCLDAFLMEEPLGPDDMWYCPRCKeHRQAIKKLDLWMLPEIIVFHLKRFTY-GRYLKNKIDTFVNFPIhNLDL 843
Cdd:cd02257   96 LPQVSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIKKLPPVLIIHLKRFSFnEDGTKEKLNTKVSFPL-ELDL 173
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 844 SKYVM------NKDGQTYVYELYAISNHYGGLGGG-HYTAYAKLIDENRWYHFDDSHVSPVNESDI-----KTSAAYLLF 911
Cdd:cd02257  174 SPYLSegekdsDSDNGSYKYELVAVVVHSGTSADSgHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVlefgsLSSSAYILF 253

                 ..
gi 508776594 912 YK 913
Cdd:cd02257  254 YE 255
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
769-912 4.55e-31

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 124.31  E-value: 4.55e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 769 SLSSCLDAFLMEEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGRYlkNKIDTFVNFPIHnLDLSKYVM 848
Cdd:cd02661  163 SLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRG--GKINKQISFPET-LDLSPYMS 239
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 508776594 849 NKDGQTYVYELYAISNHYGGLGGG-HYTAYAKLIDeNRWYHFDDSHVSPVNESDIKTSAAYLLFY 912
Cdd:cd02661  240 QPNDGPLKYKLYAVLVHSGFSPHSgHYYCYVKSSN-GKWYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
325-501 4.68e-31

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 124.31  E-value: 4.68e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 325 AGLQNLGNTCFMNSALQCLVHTPPLVEYFL-KDYSDEINTENPLGM-----HGELAlafgellrkLWSSGRIaIAPRAFK 398
Cdd:cd02661    2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLsREHSKDCCNEGFCMMcaleaHVERA---------LASSGPG-SAPRIFS 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 399 GKLARFAPQFSGYNQHDSQELLAFLLDGLHED-LNRVKQKPYIemkdsdgrpdeevaaecwrNHKARNDSVIVDVCQGQY 477
Cdd:cd02661   72 SNLKQISKHFRIGRQEDAHEFLRYLLDAMQKAcLDRFKKLKAV-------------------DPSSQETTLVQQIFGGYL 132
                        170       180
                 ....*....|....*....|....
gi 508776594 478 KSTLVCPVCSKISITFDPFMYLSL 501
Cdd:cd02661  133 RSQVKCLNCKHVSNTYDPFLDLSL 156
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
749-913 3.34e-30

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 122.48  E-value: 3.34e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 749 DIPEVHKAGFTAKKTR-QEAISLSSCLDAFLMEEPLGPDDmWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTY-GRYL 826
Cdd:cd02660  156 DIPNKSTPSWALGESGvSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHsLNKT 234
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 827 KNKIDTFVNFPIHnLDLSKYVMNKDGQT---------YVYELYAISNHYGGLGGGHYTAYAKlIDENRWYHFDDSHVSPV 897
Cdd:cd02660  235 SRKIDTYVQFPLE-LNMTPYTSSSIGDTqdsnsldpdYTYDLFAVVVHKGTLDTGHYTAYCR-QGDGQWFKFDDAMITRV 312
                        170
                 ....*....|....*.
gi 508776594 898 NESDIKTSAAYLLFYK 913
Cdd:cd02660  313 SEEEVLKSQAYLLFYH 328
DUSP smart00695
Domain in ubiquitin-specific proteases;
38-153 4.88e-26

Domain in ubiquitin-specific proteases;


Pssm-ID: 197831  Cd Length: 88  Bit Score: 102.44  E-value: 4.88e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594    38 NLKEGNLYFVISSRWFRRWERYVGMDADENvignqssdsrhlngassvvaerPGPIDNSDIvqngsdcDCKENEIQLRRM 117
Cdd:smart00695   1 PLEEGLTWYLISTRWYRQWADFVEGKDGKD----------------------PGPIDNSGI-------LCSHGGPRLKEH 51
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 508776594   118 LMEGQDYVLVPQGVWEKLHEWYKGGPA-LPRKMILQG 153
Cdd:smart00695  52 LVEGEDYVLIPEELWNKLVRWYGGGPGpIPRKVVCQG 88
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
326-509 1.00e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 106.30  E-value: 1.00e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLVHTPPLVEYFLKD--YSDEINTENPLGMHGELALAFGELLRKLWSSGRIAIAPRAFKGKLAR 403
Cdd:cd02660    2 GLINLGATCFMNVILQALLHNPLLRNYFLSDrhSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHSR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 404 fapQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMkdsdgrpdeevaaECwrnhkarndSVIVD-VCQGQYKSTLV 482
Cdd:cd02660   82 ---NLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDES-------------HC---------NCIIHqTFSGSLQSSVT 136
                        170       180
                 ....*....|....*....|....*..
gi 508776594 483 CPVCSKISITFDPFMYLSLPLPSTITR 509
Cdd:cd02660  137 CQRCGGVSTTVDPFLDLSLDIPNKSTP 163
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
774-916 2.15e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 105.42  E-value: 2.15e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 774 LDAFLMEEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYG--RYLKNKIDTFVNFPIHnLDLSKYVM--- 848
Cdd:cd02659  157 LDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDfeTMMRIKINDRFEFPLE-LDMEPYTEkgl 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 849 --------NKDGQTYVYELYAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVNESDI------------------ 902
Cdd:cd02659  236 akkegdseKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAeeecfggeetqktydsgp 315
                        170
                 ....*....|....*...
gi 508776594 903 ----KTSAAYLLFYKRVR 916
Cdd:cd02659  316 rafkRTTNAYMLFYERKS 333
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
769-913 4.97e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 104.04  E-value: 4.97e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 769 SLSSCLDAFLMEEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGRYL--KNKIDTFVNFPiHNLDLSKY 846
Cdd:cd02668  157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTgaKKKLNASISFP-EILDMGEY 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 847 VMNKDGQTYVYELYAISNHY-GGLGGGHYTAYAKliDENR--WYHFDDSHVSPV--------NESDIK------------ 903
Cdd:cd02668  236 LAESDEGSYVYELSGVLIHQgVSAYSGHYIAHIK--DEQTgeWYKFNDEDVEEMpgkplklgNSEDPAkprkseikkgth 313
                        170
                 ....*....|.
gi 508776594 904 -TSAAYLLFYK 913
Cdd:cd02668  314 sSRTAYMLVYK 324
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
326-517 1.99e-23

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 99.67  E-value: 1.99e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLVHtpplveyflkdysdeintenplgmhgelalafgellrklwssgriaiaprafkgklarfa 405
Cdd:cd02674    1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 406 pqfsgyNQHDSQELLAFLLDGLHedlnrvkqkpyiemkdsdgrpdeevaaecwrnhkarndSVIVDVCQGQYKSTLVCPV 485
Cdd:cd02674   21 ------DQQDAQEFLLFLLDGLH--------------------------------------SIIVDLFQGQLKSRLTCLT 56
                        170       180       190
                 ....*....|....*....|....*....|..
gi 508776594 486 CSKISITFDPFMYLSLPLPSTITRAMTVTVFS 517
Cdd:cd02674   57 CGKTSTTFEPFTYLSLPIPSGSGDAPKVTLED 88
DUSP pfam06337
DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the ...
42-150 6.82e-22

DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-terminus of Ubiquitin-specific proteases. The structure of this domain has been solved. Its tripod-like structure consists of a 3-fold alpha-helical bundle supporting a triple-stranded anti-parallel beta-sheet.


Pssm-ID: 399383  Cd Length: 80  Bit Score: 90.50  E-value: 6.82e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594   42 GNLYFVISSRWFRRWERYVgmdadenvigNQSSdsrhlngassvvaERPGPIDNSDIVQNGSDcdckeneIQLRRMLMEG 121
Cdd:pfam06337   1 GDKVYLISSKWLNKWKSYV----------KEPN-------------NEPGPIDNSDLLDDESN-------GQLKPNLQEG 50
                          90       100
                  ....*....|....*....|....*....
gi 508776594  122 QDYVLVPQGVWEKLHEWYKGGPALPRKMI 150
Cdd:pfam06337  51 VDYVIVPEEVWEFLVEWYGGGPEIKRNVV 79
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
769-912 1.37e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 95.92  E-value: 1.37e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 769 SLSSCLDAFLMEEPLGPDDMWYCPRCKEhrqAIKKLDLWMLPEIIVFHLKRFTYGRYLK-NKIDTFVNFPiHNLDLSKYV 847
Cdd:cd02667  112 SIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANlRKVSRHVSFP-EILDLAPFC 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 848 MNK-----DGQTYVYELYAISNHYGGLGGGHYTAYAKL---------------------IDENRWYHFDDSHVSPVNESD 901
Cdd:cd02667  188 DPKcnsseDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVrppqqrlsdltkskpaadeagPGSGQWYYISDSDVREVSLEE 267
                        170
                 ....*....|.
gi 508776594 902 IKTSAAYLLFY 912
Cdd:cd02667  268 VLKSEAYLLFY 278
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
326-513 4.34e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 91.29  E-value: 4.34e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLVHTPPLVEYFLKDysdeintenplgmhgelalafgellrklwssgriaiaPRAFKGKLARFA 405
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSET-------------------------------------PKELFSQVCRKA 43
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 406 PQFSGYNQHDSQELLAFLLDGLhedlnrvkqKPYIemkdsdgrpdeevaaecwrnhkarnDSVIVdvcqGQYKSTLVCPV 485
Cdd:cd02667   44 PQFKGYQQQDSHELLRYLLDGL---------RTFI-------------------------DSIFG----GELTSTIMCES 85
                        170       180
                 ....*....|....*....|....*...
gi 508776594 486 CSKISITFDPFMYLSLPLPSTITRAMTV 513
Cdd:cd02667   86 CGTVSLVYEPFLDLSLPRSDEIKSECSI 113
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
326-514 3.05e-19

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 88.31  E-value: 3.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLVHtpplveyflkdysdeintenplgmhgelalafgellrklwssgriaiaprafkgklarfa 405
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 406 pqfsgyNQHDSQELLAFLLDGLHEDLNRVKQKpyiemkdsdgrpdeevaaecwRNHKARNDSVIVDVCQGQYKSTLVCPV 485
Cdd:cd02257   21 ------EQQDAHEFLLFLLDKLHEELKKSSKR---------------------TSDSSSLKSLIHDLFGGKLESTIVCLE 73
                        170       180
                 ....*....|....*....|....*....
gi 508776594 486 CSKISITFDPFMYLSLPLPSTITRAMTVT 514
Cdd:cd02257   74 CGHESVSTEPELFLSLPLPVKGLPQVSLE 102
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
765-913 1.80e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 81.20  E-value: 1.80e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 765 QEAISLSSCLDAFLMEEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTY----GRYLknKIDTFVNFPIHn 840
Cdd:cd02663  144 EQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYdeqlNRYI--KLFYRVVFPLE- 220
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 841 LDLSKYVMNKDGQTYVYELYAISNHY-GGLGGGHYTAYAKLidENRWYHFDDSHVSPVNESDI-------KTSA-AYLLF 911
Cdd:cd02663  221 LRLFNTTDDAENPDRLYELVAVVVHIgGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAVeeffgdsPNQAtAYVLF 298

                 ..
gi 508776594 912 YK 913
Cdd:cd02663  299 YQ 300
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-507 9.69e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 77.74  E-value: 9.69e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 323 GLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLKDYSDEINTENPlgmhGELALAFGELLRKLWSsgriaiaPRAFKGKLA 402
Cdd:cd02669  118 GFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRK----SELVKRLSELIRKIWN-------PRNFKGHVS 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 403 ----------RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKpyiemkdsdgrpdeevaaecwrnhkarNDSVIVDV 472
Cdd:cd02669  187 phellqavskVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKP---------------------------NSSIIHDC 239
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 508776594 473 CQG--QYKSTLVCPVCSK-------------ISITFDPFMYLSLPLPSTI 507
Cdd:cd02669  240 FQGkvQIETQKIKPHAEEegskdkffkdsrvKKTSVSPFLLLTLDLPPPP 289
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
735-913 2.02e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 75.70  E-value: 2.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 735 TEKEQELYDASYLKDIPEVHKAGFTAKKTRQEAISLSSCLDA---FLMEEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPE 811
Cdd:cd02671  144 TERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAisqFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPE 223
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 812 IIVFHLKRFTYGRYLKN------KIDTFVNFPihnLDLSKYVMNKDGQTYVYELYAISNHY-GGLGGGHYTAYAkliden 884
Cdd:cd02671  224 VITIHLKCFAANGSEFDcygglsKVNTPLLTP---LKLSLEEWSTKPKNDVYRLFAVVMHSgATISSGHYTAYV------ 294
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 508776594 885 RWYHFDDSHVSPVNESDIK---------TSAAYLLFYK 913
Cdd:cd02671  295 RWLLFDDSEVKVTEEKDFLealspntssTSTPYLLFYK 332
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
326-438 2.47e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 74.67  E-value: 2.47e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLVHTPPLVEYfLKDYSDeiNTENPLGMHGELALAFGELLRKLwSSGRIAIAPRAFKGKLARFA 405
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPELRDA-LKNYNP--ARRGANQSSDNLTNALRDLFDTM-DKKQEPVPPIEFLQLLRMAF 76
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 508776594 406 PQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKP 438
Cdd:cd02657   77 PQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKG 115
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
742-914 3.00e-14

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 74.07  E-value: 3.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 742 YDASYLKDIPEVH-----KAGFTAKKTRQEaislssCLDAFlmeEPLGPDDMWYCPRCKEHRQAIKKLDLWM----LPEI 812
Cdd:COG5533  112 KKKTSTGDWFDIIielpdQTWVNNLKTLQE------FIDNM---EELVDDETGVKAKENEELEVQAKQEYEVsfvkLPKI 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 813 IVFHLKRFTYgRYLKNKIDTFVNFPIHnLDLSKYVMNKDGQTYVYELYAISNHYGGLGGGHYTAYAKLidENRWYHFDDS 892
Cdd:COG5533  183 LTIQLKRFAN-LGGNQKIDTEVDEKFE-LPVKHDQILNIVKETYYDLVGFVLHQGSLEGGHYIAYVKK--GGKWEKANDS 258
                        170       180
                 ....*....|....*....|....*
gi 508776594 893 HVSPVNESDIKTSA---AYLLFYKR 914
Cdd:COG5533  259 DVTPVSEEEAINEKaknAYLYFYER 283
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
326-504 4.84e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 68.12  E-value: 4.84e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLVHTPPLVEYFLKDYSD-EINTENPlgmhgelALAFGELLRKLWS---SGR------------ 389
Cdd:cd02658    1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKfPSDVVDP-------ANDLNCQLIKLADgllSGRyskpaslksend 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 390 ---IAIAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDglhedlnrvkqkpyiemkdsdgrpdeEVAAECWRNHKArND 466
Cdd:cd02658   74 pyqVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLID--------------------------KLDRESFKNLGL-NP 126
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 508776594 467 SVIVDVCQGQyksTLVCPVCSKISITFDPFMYLSLPLP 504
Cdd:cd02658  127 NDLFKFMIED---RLECLSCKKVKYTSELSEILSLPVP 161
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
326-505 5.25e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 68.29  E-value: 5.25e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLVHTpplveyflKDYSDEINTENPLGMHGELALAFGE-LLRKLW--SSGRIAIAPRAFkgKLA 402
Cdd:cd02664    1 GLINLGNTCYMNSVLQALFMA--------KDFRRQVLSLNLPRLGDSQSVMKKLqLLQAHLmhTQRRAEAPPDYF--LEA 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 403 RFAPQFSGYNQHDSQELLAFLLDGLHedlnrvkqkpyiemkdsdgrpdeevaaecwrnhkarndSVIVDVCQGQYKSTLV 482
Cdd:cd02664   71 SRPPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTIR 112
                        170       180
                 ....*....|....*....|...
gi 508776594 483 CPVCSKISITFDPFMYLSLPLPS 505
Cdd:cd02664  113 CLNCNSTSARTERFRDLDLSFPS 135
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
809-913 1.20e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 66.59  E-value: 1.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 809 LPEIIVFHLKRFTYGRYL--KNKIDTFVNFPIhNLDLSKYVMNkdgqTYVYELYAISNHYGGLGGG-HYTAYAKLIDENR 885
Cdd:cd02657  196 LPKYLTVQFVRFFWKRDIqkKAKILRKVKFPF-ELDLYELCTP----SGYYELVAVITHQGRSADSgHYVAWVRRKNDGK 270
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 508776594 886 WYHFDDSHVSPVNESDIKTSA-------AYLLFYK 913
Cdd:cd02657  271 WIKFDDDKVSEVTEEDILKLSgggdwhiAYILLYK 305
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
326-431 4.85e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 64.44  E-value: 4.85e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLV-HTPPLVEYF------LKDYSDEINTENPLgMHGELALAFgelLRKLWSSgriaiaprafk 398
Cdd:COG5533    1 GLPNLGNTCFMNSVLQILAlYLPKLDELLddlskeLKVLKNVIRKPEPD-LNQEEALKL---FTALWSS----------- 65
                         90       100       110
                 ....*....|....*....|....*....|...
gi 508776594 399 gKLARFAPQFSGYNQHDSQELLAFLLDGLHEDL 431
Cdd:COG5533   66 -KEHKVGWIPPMGSQEDAHELLGKLLDELKLDL 97
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
762-912 5.77e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 60.84  E-value: 5.77e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 762 KTRQEAISLSSCLDAFLMEEPLgpDDmWYCPRCKehrQAIKKLdlwmlPEIIVFHLKRFTY---GRYLKNKIDtfVNFPi 838
Cdd:cd02662   90 QSSGSGTTLEHCLDDFLSTEII--DD-YKCDRCQ---TVIVRL-----PQILCIHLSRSVFdgrGTSTKNSCK--VSFP- 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 839 hnLDLSKYVmnkdgqtyvYELYAISNHYGGLGGGHYTAY---------------AKLIDE-----NRWYHFDDSHVSPVN 898
Cdd:cd02662  156 --ERLPKVL---------YRLRAVVVHYGSHSSGHYVCYrrkplfskdkepgsfVRMREGpsstsHPWWRISDTTVKEVS 224
                        170
                 ....*....|....*
gi 508776594 899 ESDIK-TSAAYLLFY 912
Cdd:cd02662  225 ESEVLeQKSAYMLFY 239
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-429 8.29e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 61.45  E-value: 8.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 324 LAGLQNLGNTCFMNSALQCLVHTPPLVEYFLKDYSDEINTENplgmhgeLALAFgELLRKLWSSGRIAIAPRAFKGKLAR 403
Cdd:cd02671   24 FVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQ-------LQSSF-LLNPEKYNDELANQAPRRLLNALRE 95
                         90       100
                 ....*....|....*....|....*.
gi 508776594 404 FAPQFSGYNQHDSQELLAFLLDGLHE 429
Cdd:cd02671   96 VNPMYEGYLQHDAQEVLQCILGNIQE 121
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
766-913 2.70e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 59.64  E-value: 2.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 766 EAISLSSCLDAFLMEEPLgpDDmwYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGR-YLKNKIDTFVNFPiHNLDLS 844
Cdd:cd02658  176 EPVPLEDCLKAYFAPETI--ED--FCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLEnWVPKKLDVPIDVP-EELGPG 250
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 508776594 845 KyvmnkdgqtyvYELYAISNHY-GGLGGGHYTAYAK--LIDENRWYHFDDSHVSPVNESDIKTSAAYLLFYK 913
Cdd:cd02658  251 K-----------YELIAFISHKgTSVHSGHYVAHIKkeIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
809-913 1.52e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 58.10  E-value: 1.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 809 LPEIIVFHLKRFTYGRYLKNKIDTFVNFPIHNLDLSKYVMNKDGQTYVYELY----AISNHYGGLGGGHYTAYAKLIDEN 884
Cdd:cd02669  332 LPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYnlvaNIVHEGTPQEDGTWRVQLRHKSTN 411
                         90       100
                 ....*....|....*....|....*....
gi 508776594 885 RWYHFDDSHVSPVNESDIKTSAAYLLFYK 913
Cdd:cd02669  412 KWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
326-508 7.30e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 55.01  E-value: 7.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLVHTPPLveYFLKDYSDEInTENplgmhgelalafgellRKLWSSgriaIAPRAFKGKLARFA 405
Cdd:cd02663    1 GLENFGNTCYCNSVLQALYFENLL--TCLKDLFESI-SEQ----------------KKRTGV----ISPKKFITRLKREN 57
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 406 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKpyiemkdsdgrpdEEVAAECWRNHKARNDSVIV-DVCQGQYKSTLVCP 484
Cdd:cd02663   58 ELFDNYMHQDAHEFLNFLLNEIAEILDAERKA-------------EKANRKLNNNNNAEPQPTWVhEIFQGILTNETRCL 124
                        170       180
                 ....*....|....*....|....*.
gi 508776594 485 VCSKISITFDPFMYLSLPLP--STIT 508
Cdd:cd02663  125 TCETVSSRDETFLDLSIDVEqnTSIT 150
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
769-913 8.19e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 55.19  E-value: 8.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 769 SLSSCLDAFLMEEPLGPDDMWYCPRCKEHRQAIKKLDLWMLPEIIVFHLKRFTYGR--YLKNKIDTFVnfpIHNLDL--- 843
Cdd:cd02664  135 SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQktHVREKIMDNV---SINEVLslp 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 844 -------SKYVMNKDG-----------QTYVYELYAISNHY-GGLGGGHYTAYAK--------------------LIDEN 884
Cdd:cd02664  212 vrvesksSESPLEKKEeesgddgelvtRQVHYRLYAVVVHSgYSSESGHYFTYARdqtdadstgqecpepkdaeeNDESK 291
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 508776594 885 RWYHFDDSHVSPVNESDIKT-------SAAYLLFYK 913
Cdd:cd02664  292 NWYLFNDSRVTFSSFESVQNvtsrfpkDTPYILFYE 327
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-440 2.09e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 53.80  E-value: 2.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 323 GLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLKDYSDEINTENPLGMHgELALAFGELlrKLWSSGRIAIAPRafkGKLA 402
Cdd:cd02659    1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPL-ALQRLFLFL--QLSESPVKTTELT---DKTR 74
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 508776594 403 RFAPQFS-GYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 440
Cdd:cd02659   75 SFGWDSLnTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLI 113
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
326-503 9.26e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 52.04  E-value: 9.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 326 GLQNLGNTCFMNSALQCLVHTPPLVEYFLK---------DYSDEINTENPLGMHGELALAFgellRKLWSSGRIAIAPRA 396
Cdd:cd02668    1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYEcnstedaelKNMPPDKPHEPQTIIDQLQLIF----AQLQFGNRSVVDPSG 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 397 FKGKLarfapQFSGYNQHDSQELLAFLLDGLHEDLNRVKqkpyiemkdsdgrpdeevaaecwrNHKARNdsVIVDVCQGQ 476
Cdd:cd02668   77 FVKAL-----GLDTGQQQDAQEFSKLFLSLLEAKLSKSK------------------------NPDLKN--IVQDLFRGE 125
                        170       180
                 ....*....|....*....|....*..
gi 508776594 477 YKSTLVCPVCSKISITFDPFMYLSLPL 503
Cdd:cd02668  126 YSYVTQCSKCGRESSLPSKFYELELQL 152
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
809-902 4.12e-06

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 51.02  E-value: 4.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  809 LPEIIVFHLKRFTYG--RYLKNKIDTFVNFPIhNLDLSKYV----MNKDGQTYVYELYAISNHYGGLGGGHYTAYAKLID 882
Cdd:COG5077   378 LPPVLHLQLKRFEYDfeRDMMVKINDRYEFPL-EIDLLPFLdrdaDKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEK 456
                          90       100
                  ....*....|....*....|
gi 508776594  883 ENRWYHFDDSHVSPVNESDI 902
Cdd:COG5077   457 DGRWYKFDDTRVTRATEKEV 476
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
791-912 1.67e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 47.14  E-value: 1.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 791 CPRCKeHRQAIKKLDLWMLPEIIVFHLKRFTY----GRYLKNKIDTFVNFpihnldlskyvmnkDGQTYVYELYAISNHY 866
Cdd:cd02673  129 CSSCK-CESAISSERIMTFPECLSINLKRYKLriatSDYLKKNEEIMKKY--------------CGTDAKYSLVAVICHL 193
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 508776594 867 GGLGGG-HYTAYAK-LIDENRWYHFDDSHVSPVNESDIK---TSAAYLLFY 912
Cdd:cd02673  194 GESPYDgHYIAYTKeLYNGSSWLYCSDDEIRPVSKNDVStnaRSSGYLIFY 244
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
326-360 2.63e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 46.59  E-value: 2.63e-05
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 508776594 326 GLQNLGNTCFMNSALQCLVHTPPLVEYfLKDYSDE 360
Cdd:cd02662    1 GLVNLGNTCFMNSVLQALASLPSLIEY-LEEFLEQ 34
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
325-382 4.98e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 43.25  E-value: 4.98e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 508776594 325 AGLQNLGNTCFMNSALQCLVHTPPLVEYFLkDYsDEINTENPLGMH-----GELALAFGELLR 382
Cdd:cd02666    2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVL-NF-DESKAELASDYPterriGGREVSRSELQR 62
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
809-912 1.15e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 41.39  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 809 LPEIIVFHLKRFTYGRYLKNKIDTFVNFPihnldlskyvmnKDGQTYVYELYAISNHYGGLGGGHYTAYAKLIDENRWYH 888
Cdd:cd02665  128 LPPVLTFELSRFEFNQGRPEKIHDKLEFP------------QIIQQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEK 195
                         90       100       110
                 ....*....|....*....|....*....|..
gi 508776594 889 FDDSHVSPVNESDIKTSA--------AYLLFY 912
Cdd:cd02665  196 YNDISVTESSWEEVERDSfgggrnpsAYCLMY 227
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
310-427 1.46e-03

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 42.55  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594  310 FDAYNSvrkGEKGGLAGLQNLGNTCFMNSALQCLVHTpplvEYFLKDYSdEINTENPLGmHGELALAFGELLRKLwSSGR 389
Cdd:COG5077   182 FLNYNS---KKETGYVGLRNQGATCYMNSLLQSLFFI----AKFRKDVY-GIPTDHPRG-RDSVALALQRLFYNL-QTGE 251
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 508776594  390 IAIAPRAFKGKLArfAPQFSGYNQHDSQELLAFLLDGL 427
Cdd:COG5077   252 EPVDTTELTRSFG--WDSDDSFMQHDIQEFNRVLQDNL 287
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
768-913 4.47e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 40.19  E-value: 4.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 768 ISLSSCLDAFLMEEPLGPDdmwYCPRCKEHRQAIKKLDLWMLPEI----IVFHLKRFTYGRYLKN-------KIDTFVNF 836
Cdd:cd02672  117 STFLQLLKRSLDLEKVTKA---WCDTCCKYQPLEQTTSIRHLPDIlllvLVINLSVTNGEFDDINvvlpsgkVMQNKVSP 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508776594 837 PIHNLDlsKYVMNKDGQ-TYVYELYAI---------SNHYGGLggghYTAYAKLIDENRWYHFDDSHVSPVNESdiktsa 906
Cdd:cd02672  194 KAIDHD--KLVKNRGQEsIYKYELVGYvceindssrGQHNVVF----VIKVNEESTHGRWYLFNDFLVTPVSEL------ 261

                 ....*..
gi 508776594 907 AYLLFYK 913
Cdd:cd02672  262 AYILLYQ 268
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH