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Conserved domains on  [gi|507580222|gb|AGM50644|]
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cytochrome b, partial (mitochondrion) [Pao suvattii]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 677.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00131  32 NFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00131 112 TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAA 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00131 192 ATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPE 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00131 272 WYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIG 351

                        330       340
                 ....*....|....*....|
gi 507580222 321 QVASILYFSLFLILMPMAGL 340
Cdd:MTH00131 352 QVASVLYFSLFLVLMPLAGW 371
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 677.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00131  32 NFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00131 112 TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAA 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00131 192 ATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPE 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00131 272 WYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIG 351

                        330       340
                 ....*....|....*....|
gi 507580222 321 QVASILYFSLFLILMPMAGL 340
Cdd:MTH00131 352 QVASVLYFSLFLVLMPLAGW 371
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-336 1.89e-119

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 349.86  E-value: 1.89e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYlqKE 80
Cdd:COG1290   41 WFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KK 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 ----TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFH-FLLP 155
Cdd:COG1290  119 prelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLP 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 156 FIIAAATIVHLIFLHETGSNNPLG----LNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNylGDPDNFTPANPL 231
Cdd:COG1290  199 ALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPL 276

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 232 VTPAHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGG 309
Cdd:COG1290  277 ATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGA 356

                        330       340
                 ....*....|....*....|....*..
gi 507580222 310 MPVehPYVIIGQVASILYFSLFLILMP 336
Cdd:COG1290  357 NPP--IATLLGSINTVTYFAFFLIVLP 381
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-175 1.19e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 246.51  E-value: 1.19e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSY--LQ 78
Cdd:cd00284   24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  79 KETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFII 158
Cdd:cd00284  104 ELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFII 183

                        170
                 ....*....|....*..
gi 507580222 159 AAATIVHLIFLHETGSN 175
Cdd:cd00284  184 AVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-173 2.40e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.66  E-value: 2.40e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222    1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYG--SYLQ 78
Cdd:pfam00033  15 NFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   79 KETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFII 158
Cdd:pfam00033  95 ELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFIL 174

                         170
                  ....*....|....*
gi 507580222  159 AAATIVHLIFLHETG 173
Cdd:pfam00033 175 AILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 227-299 4.15e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.80  E-value: 4.15e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 507580222  227 PANPLVTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFR---PFTQLLFWTLIA 299
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFRrpvATTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 677.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00131  32 NFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00131 112 TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAA 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00131 192 ATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPE 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00131 272 WYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIG 351

                        330       340
                 ....*....|....*....|
gi 507580222 321 QVASILYFSLFLILMPMAGL 340
Cdd:MTH00131 352 QVASVLYFSLFLVLMPLAGW 371
CYTB MTH00119
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 632.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00119  33 NFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKE 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00119 113 TWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAG 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00119 193 LTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPE 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00119 273 WYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIG 352

                        330       340
                 ....*....|....*....|
gi 507580222 321 QVASILYFSLFLILMPMAGL 340
Cdd:MTH00119 353 QLASILYFTILLILFPLLGA 372
CYTB MTH00074
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 618.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00074  33 NFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKE 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00074 113 TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAG 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00074 193 ASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPE 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00074 273 WYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIG 352

                        330       340
                 ....*....|....*....|
gi 507580222 321 QVASILYFSLFLILMPMAGL 340
Cdd:MTH00074 353 QAASILYFLLFIIIIPLTGW 372
CYTB MTH00100
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 611.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00100  32 NFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLE 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00100 112 TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITA 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00100 192 LAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00100 272 WYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIG 351

                        330       340
                 ....*....|....*....|
gi 507580222 321 QVASILYFSLFLILMPMAGL 340
Cdd:MTH00100 352 QLASILYFLIILILMPIASL 371
CYTB MTH00191
cytochrome b; Provisional
 1-337 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 587.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00191  29 NFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKE 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00191 109 TWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAA 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00191 189 LSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPE 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00191 269 WYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLG 348

                        330
                 ....*....|....*..
gi 507580222 321 QVASILYFSLFLILMPM 337
Cdd:MTH00191 349 QISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 572.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00156  22 NFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKH 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00156 102 TWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00156 182 MVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPE 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00156 262 WYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTG 341

                        330
                 ....*....|....*
gi 507580222 321 QVASILYFSLFLILM 335
Cdd:MTH00156 342 QILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-340 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 548.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00034  32 NFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIE 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00034 112 TWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAA 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00034 192 LSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPE 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00034 272 WYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLG 351

                        330       340
                 ....*....|....*....|
gi 507580222 321 QVASILYFSLFLILMPMAGL 340
Cdd:MTH00034 352 QVASVLYFSLFLFFFPLISY 371
CYTB MTH00145
cytochrome b; Provisional
 1-334 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 547.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00145  33 NFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQH 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00145 113 TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILG 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00145 193 LSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPE 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00145 273 WYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIG 352

                        330
                 ....*....|....
gi 507580222 321 QVASILYFSLFLIL 334
Cdd:MTH00145 353 QVFTVLYFLFFLIL 366
CYTB MTH00016
cytochrome b; Validated
 1-334 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 512.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00016  33 NFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLME 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00016 113 TWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAA 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00016 193 LSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPE 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00016 273 WYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLG 352

                        330
                 ....*....|....
gi 507580222 321 QVASILYFSLFLIL 334
Cdd:MTH00016 353 QIFTVFYFFYFMIN 366
CYTB MTH00022
cytochrome b; Validated
 1-339 1.89e-166

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 468.80  E-value: 1.89e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00022  31 NFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFH 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00022 111 VWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAF 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00022 191 LVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPE 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00022 271 WYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIG 350

                        330
                 ....*....|....*....
gi 507580222 321 QVASILYFSLFLILMPMAG 339
Cdd:MTH00022 351 QLLSFFYFFYFLVLIPLLG 369
CYTB MTH00053
cytochrome b; Provisional
 1-339 6.28e-164

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 462.25  E-value: 6.28e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00053  33 NFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKII 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00053 113 VWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAG 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00053 193 LALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPE 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00053 273 WYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIG 352

                        330
                 ....*....|....*....
gi 507580222 321 QVASILYFSLFLILMPMAG 339
Cdd:MTH00053 353 QIASIFYFAYFLILMPLAG 371
CYTB MTH00224
cytochrome b; Provisional
 1-333 3.36e-162

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 457.85  E-value: 3.36e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00224  33 NYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSE 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00224 113 TWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMG 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00224 193 ATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPE 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00224 273 WYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIG 352

                        330
                 ....*....|...
gi 507580222 321 QVASILYFSLFLI 333
Cdd:MTH00224 353 QVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 1-339 8.72e-123

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 358.10  E-value: 8.72e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00033  29 NFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00033 109 TWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVG 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFS--PNYLGDPDNFTPANPLVTPAHIK 238
Cdd:MTH00033 189 LVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQ 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 239 PEWYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPV-EHPYV 317
Cdd:MTH00033 269 PEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYV 348

                        330       340
                 ....*....|....*....|..
gi 507580222 318 IIGQVASILYFSLFLILMPMAG 339
Cdd:MTH00033 349 LIGRIATIFYFGYFLVLVPLLG 370
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-336 1.89e-119

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 349.86  E-value: 1.89e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYlqKE 80
Cdd:COG1290   41 WFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KK 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 ----TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFH-FLLP 155
Cdd:COG1290  119 prelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLP 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 156 FIIAAATIVHLIFLHETGSNNPLG----LNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNylGDPDNFTPANPL 231
Cdd:COG1290  199 ALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPL 276

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 232 VTPAHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTWIGG 309
Cdd:COG1290  277 ATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGA 356

                        330       340
                 ....*....|....*....|....*..
gi 507580222 310 MPVehPYVIIGQVASILYFSLFLILMP 336
Cdd:COG1290  357 NPP--IATLLGSINTVTYFAFFLIVLP 381
CYTB MTH00086
cytochrome b; Provisional
 1-335 1.09e-112

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 331.13  E-value: 1.09e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE 80
Cdd:MTH00086  21 NFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKK 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAA 160
Cdd:MTH00086 101 VWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLV 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 161 ATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFaTLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPE 240
Cdd:MTH00086 181 LVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPE 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 241 WYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQrslTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIG 320
Cdd:MTH00086 260 WYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLS 336

                        330
                 ....*....|....*
gi 507580222 321 QVASILYFSLFLILM 335
Cdd:MTH00086 337 QIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 3-333 5.07e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 260.69  E-value: 5.07e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   3 GSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKETW 82
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  83 NIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFIIAAAT 162
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 163 IVHLIFLHETGSNNPLGL-NSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPEW 241
Cdd:MTH00046 185 VVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEW 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 242 YFLFAYAILRSIPNKLGGVlallasiliLMVVPFLHT----SKQRSLTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYV 317
Cdd:MTH00046 265 YFLAFYAMLRSINSKIGGL---------VLVLSFLFFlwvpTFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYL 335

                        330
                 ....*....|....*.
gi 507580222 318 IIGQVASILYFSLFLI 333
Cdd:MTH00046 336 LISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-175 1.19e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 246.51  E-value: 1.19e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSY--LQ 78
Cdd:cd00284   24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  79 KETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFII 158
Cdd:cd00284  104 ELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFII 183

                        170
                 ....*....|....*..
gi 507580222 159 AAATIVHLIFLHETGSN 175
Cdd:cd00284  184 AVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-173 2.40e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.66  E-value: 2.40e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222    1 NFGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYG--SYLQ 78
Cdd:pfam00033  15 NFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   79 KETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFHFLLPFII 158
Cdd:pfam00033  95 ELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFIL 174

                         170
                  ....*....|....*
gi 507580222  159 AAATIVHLIFLHETG 173
Cdd:pfam00033 175 AILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 176-323 6.72e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 158.19  E-value: 6.72e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 176 NPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTLFSPNYLGDPDNFTPANPLVTPAHIKPEWYFLFAYAILRSIPN 255
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 507580222 256 KLGGVLALLASILILMVVPFLHTSKQRSlTFRPFTQLLFWTLIADVAILTWIGGMPVEHPYVIIGQVA 323
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
57-222 1.01e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.86  E-value: 1.01e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   57 SFFFICIYFHIGRGLYYGSYLQKE--TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVW 134
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  135 GGFSVDHATLTRFFAFHF-LLPFIIAAATIVHLIFLHETGSNNPLGLNSDTDKIPFHPYFSYKDLIGFATLLAALTTLTL 213
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 507580222  214 FSPNYLGDP 222
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
227-327 2.13e-40

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 137.22  E-value: 2.13e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  227 PANPLVTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFRPFTQLLFWTLIADVAILTW 306
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 507580222  307 IGGMPVEHPYVIIGQVASILY 327
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 2-178 2.22e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 130.99  E-value: 2.22e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222   2 FGSLLGLWLIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE- 80
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  81 -TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFH-FLLPFII 158
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 507580222 159 AAATIVHLIFLHETGSNNPL 178
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 10-178 4.30e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 114.05  E-value: 4.30e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  10 LIAQILTGLFLAMQYT*DIA*AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLQKE--TWNIGVI 87
Cdd:CHL00070  44 FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222  88 LLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWVWGGFSVDHATLTRFFAFH-FLLPFIIAAATIVHL 166
Cdd:CHL00070 124 LAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHF 203

                        170
                 ....*....|..
gi 507580222 167 IFLHETGSNNPL 178
Cdd:CHL00070 204 LMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 227-276 2.74e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 55.57  E-value: 2.74e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 507580222 227 PANPLVTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMVVPFL 276
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFI 115
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 227-299 4.15e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.80  E-value: 4.15e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 507580222  227 PANPLVTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTFR---PFTQLLFWTLIA 299
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFRrpvATTVFLFGTVVA 140
petD CHL00058
cytochrome b6/f complex subunit IV
 227-313 6.09e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 54.24  E-value: 6.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 507580222 227 PANPLVTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMVVPFLHTSKQRSLTF-RPFTQLLFwtLIAD-VAIL 304
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVF--LIGTaVALW 142

                         90
                 ....*....|
gi 507580222 305 TWIGG-MPVE 313
Cdd:CHL00058 143 LGIGAtLPID 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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