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Conserved domains on  [gi|50725498|dbj|BAD32968|]
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RNA-binding protein-like [Oryza sativa Japonica Group]

Protein Classification

zinc finger Ran-binding domain-containing protein( domain architecture ID 10457766)

zinc finger Ran-binding domain-containing protein similar to Arabidopsis thaliana chloroplastic zinc finger protein VAR3, which is involved in C-to-U editing of chloroplastic RNA

CATH:  2.20.28.140
Gene Ontology:  GO:0008270|GO:0003723
PubMed:  19505478|17210253|11179890|12665246
SCOP:  4000343

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
83-108 1.84e-05

Zn-finger in Ran binding protein and others;


:

Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 40.80  E-value: 1.84e-05
                          10        20
                  ....*....|....*....|....*.
gi 50725498    83 REGDWICqnPNCGNLNFARRTHCNNC 108
Cdd:pfam00641   1 REGDWDC--SKCLVQNFATSTKCVAC 24
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
83-108 1.84e-05

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 40.80  E-value: 1.84e-05
                          10        20
                  ....*....|....*....|....*.
gi 50725498    83 REGDWICqnPNCGNLNFARRTHCNNC 108
Cdd:pfam00641   1 REGDWDC--SKCLVQNFATSTKCVAC 24
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 85-109 3.31e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 39.99  E-value: 3.31e-05
                           10        20
                   ....*....|....*....|....*
gi 50725498     85 GDWICqnPNCGNLNFARRTHCNNCN 109
Cdd:smart00547   1 GDWEC--PACTFLNFASRSKCFACG 23
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
83-108 1.84e-05

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 40.80  E-value: 1.84e-05
                          10        20
                  ....*....|....*....|....*.
gi 50725498    83 REGDWICqnPNCGNLNFARRTHCNNC 108
Cdd:pfam00641   1 REGDWDC--SKCLVQNFATSTKCVAC 24
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 85-109 3.31e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 39.99  E-value: 3.31e-05
                           10        20
                   ....*....|....*....|....*
gi 50725498     85 GDWICqnPNCGNLNFARRTHCNNCN 109
Cdd:smart00547   1 GDWEC--PACTFLNFASRSKCFACG 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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