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Conserved domains on  [gi|50540034|ref|NP_001002486|]
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60S ribosomal protein L38 [Danio rerio]

Protein Classification

eL38 family ribosomal protein( domain architecture ID 10484840)

eL38 family ribosomal protein is a component of the large ribosomal subunit

Gene Ontology:  GO:0003735|GO:0022618|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L38e pfam01781
Ribosomal L38e protein family;
2-68 1.65e-33

Ribosomal L38e protein family;


:

Pssm-ID: 460326  Cd Length: 67  Bit Score: 109.16  E-value: 1.65e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50540034    2 PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68
Cdd:pfam01781  1 PKEITDIKDFLEIARRKDAKSVRIKKNKDNTKFKVRCSRYLYTLVVADKEKAEKLKQSLPPGLKVKE 67
 
Name Accession Description Interval E-value
Ribosomal_L38e pfam01781
Ribosomal L38e protein family;
2-68 1.65e-33

Ribosomal L38e protein family;


Pssm-ID: 460326  Cd Length: 67  Bit Score: 109.16  E-value: 1.65e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50540034    2 PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68
Cdd:pfam01781  1 PKEITDIKDFLEIARRKDAKSVRIKKNKDNTKFKVRCSRYLYTLVVADKEKAEKLKQSLPPGLKVKE 67
PTZ00181 PTZ00181
60S ribosomal protein L38; Provisional
 1-62 9.87e-17

60S ribosomal protein L38; Provisional


Pssm-ID: 140208  Cd Length: 82  Bit Score: 67.05  E-value: 9.87e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 50540034   1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPP 62
Cdd:PTZ00181  1 MPREIKTLKEFLAICSRKDARCVKVKHNPSATKFKVRCSRYLYTLVVADKKKADKIERSIHP 62
 
Name Accession Description Interval E-value
Ribosomal_L38e pfam01781
Ribosomal L38e protein family;
2-68 1.65e-33

Ribosomal L38e protein family;


Pssm-ID: 460326  Cd Length: 67  Bit Score: 109.16  E-value: 1.65e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50540034    2 PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68
Cdd:pfam01781  1 PKEITDIKDFLEIARRKDAKSVRIKKNKDNTKFKVRCSRYLYTLVVADKEKAEKLKQSLPPGLKVKE 67
PTZ00181 PTZ00181
60S ribosomal protein L38; Provisional
 1-62 9.87e-17

60S ribosomal protein L38; Provisional


Pssm-ID: 140208  Cd Length: 82  Bit Score: 67.05  E-value: 9.87e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 50540034   1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPP 62
Cdd:PTZ00181  1 MPREIKTLKEFLAICSRKDARCVKVKHNPSATKFKVRCSRYLYTLVVADKKKADKIERSIHP 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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