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Conserved domains on  [gi|505227829|ref|WP_015414931|]
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YwbE family protein [Pseudodesulfovibrio piezophilus]

Protein Classification

YwbE family protein( domain architecture ID 10561707)

YwbE family protein is a DUF2196 domain-containing protein; similar to Bacillus subtilis protein YwbE

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YwbE COG4895
Uncharacterized conserved protein YwbE, DUF2196 family [Function unknown];
1-64 2.60e-37

Uncharacterized conserved protein YwbE, DUF2196 family [Function unknown];


:

Pssm-ID: 443923  Cd Length: 64  Bit Score: 118.35  E-value: 2.60e-37
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505227829  1 MDGSTRKNLKPGMRVNIVLKKDQRTGTLTQGIIKNLLTKSPTHPHGIKVRLEDGQVGRVKEILE 64
Cdd:COG4895   1 MDGTNRKNIKPGLTVEIVLKKDQRTGKLTEGIVKDILTNSPTHPHGIKVRLEDGQVGRVKEIVE 64
 
Name Accession Description Interval E-value
YwbE COG4895
Uncharacterized conserved protein YwbE, DUF2196 family [Function unknown];
1-64 2.60e-37

Uncharacterized conserved protein YwbE, DUF2196 family [Function unknown];


Pssm-ID: 443923  Cd Length: 64  Bit Score: 118.35  E-value: 2.60e-37
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505227829  1 MDGSTRKNLKPGMRVNIVLKKDQRTGTLTQGIIKNLLTKSPTHPHGIKVRLEDGQVGRVKEILE 64
Cdd:COG4895   1 MDGTNRKNIKPGLTVEIVLKKDQRTGKLTEGIVKDILTNSPTHPHGIKVRLEDGQVGRVKEIVE 64
DUF2196 pfam09962
Uncharacterized conserved protein (DUF2196); This domain, found in various hypothetical ...
 3-61 1.84e-33

Uncharacterized conserved protein (DUF2196); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 430953  Cd Length: 59  Bit Score: 108.32  E-value: 1.84e-33
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 505227829   3 GSTRKNLKPGMRVNIVLKKDQRTGTLTQGIIKNLLTKSPTHPHGIKVRLEDGQVGRVKE 61
Cdd:pfam09962  1 GPTRKDIKPGLTVEIVLKKDQRTGKLTEGIVKDILTNSPFHPHGIKVRLEDGQVGRVQE 59
TIGR03833 TIGR03833
conserved hypothetical protein; A pair of adjacent genes, ablAB (acetyl-beta-lysine ...
 2-63 2.95e-33

conserved hypothetical protein; A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown. [Hypothetical proteins, Conserved]


Pssm-ID: 274807  Cd Length: 62  Bit Score: 108.11  E-value: 2.95e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505227829   2 DGSTRKNLKPGMRVNIVLKKDQRTGTLTQGIIKNLLTKSPTHPHGIKVRLEDGQVGRVKEIL 63
Cdd:TIGR03833  1 NGTKRSNIKPGLSVDIVLKQDQRTGKLTRGIVKDILTNSPTHPHGIKVRLEDGQVGRVKEIL 62
 
Name Accession Description Interval E-value
YwbE COG4895
Uncharacterized conserved protein YwbE, DUF2196 family [Function unknown];
1-64 2.60e-37

Uncharacterized conserved protein YwbE, DUF2196 family [Function unknown];


Pssm-ID: 443923  Cd Length: 64  Bit Score: 118.35  E-value: 2.60e-37
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505227829  1 MDGSTRKNLKPGMRVNIVLKKDQRTGTLTQGIIKNLLTKSPTHPHGIKVRLEDGQVGRVKEILE 64
Cdd:COG4895   1 MDGTNRKNIKPGLTVEIVLKKDQRTGKLTEGIVKDILTNSPTHPHGIKVRLEDGQVGRVKEIVE 64
DUF2196 pfam09962
Uncharacterized conserved protein (DUF2196); This domain, found in various hypothetical ...
 3-61 1.84e-33

Uncharacterized conserved protein (DUF2196); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 430953  Cd Length: 59  Bit Score: 108.32  E-value: 1.84e-33
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 505227829   3 GSTRKNLKPGMRVNIVLKKDQRTGTLTQGIIKNLLTKSPTHPHGIKVRLEDGQVGRVKE 61
Cdd:pfam09962  1 GPTRKDIKPGLTVEIVLKKDQRTGKLTEGIVKDILTNSPFHPHGIKVRLEDGQVGRVQE 59
TIGR03833 TIGR03833
conserved hypothetical protein; A pair of adjacent genes, ablAB (acetyl-beta-lysine ...
 2-63 2.95e-33

conserved hypothetical protein; A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown. [Hypothetical proteins, Conserved]


Pssm-ID: 274807  Cd Length: 62  Bit Score: 108.11  E-value: 2.95e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505227829   2 DGSTRKNLKPGMRVNIVLKKDQRTGTLTQGIIKNLLTKSPTHPHGIKVRLEDGQVGRVKEIL 63
Cdd:TIGR03833  1 NGTKRSNIKPGLSVDIVLKQDQRTGKLTRGIVKDILTNSPTHPHGIKVRLEDGQVGRVKEIL 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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