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Conserved domains on  [gi|505033514|ref|WP_015220616|]
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type II and III secretion system protein [Cyanobacterium aponinum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 496-720 6.06e-37

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 141.60  E-value: 6.06e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 496 NSGQISPFGVNYDATQPGNPATVRPGRNFNV--PQAFLAQIRANVTSGNAKILTDPTLVVQEGQVGAVKLVENVVTSVNT 573
Cdd:COG1450  107 GNGGGVNFGGTGSLGSLAAAGSLGGGLNLGLlgGGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPYVTGS 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 574 SIDQLSGVRTTTPVIEPAGLTLSVVvDKIDDNGFITLQVEPNISAPGTPqvfrsgVGADNVITPLVERTVSSGKIRLRDG 653
Cdd:COG1450  187 TTTSSTGNPTTTIEYVDVGITLKVT-PQINEDGTVTLDINPEVSSVTGS------TTGGGNGLPTINKREISTTVRVKDG 259

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505033514 654 QTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTPQILDDSEGYSGFGYNY 720
Cdd:COG1450  260 QTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALTEEY 326
STN pfam07660
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 152-189 3.83e-03

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


:

Pssm-ID: 429580 [Multi-domain]  Cd Length: 51  Bit Score: 35.95  E-value: 3.83e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 505033514  152 TVSLDLENEPIQDVFNSVLLISGLKANRQGNTVFVGNK 189
Cdd:pfam07660  14 SVSLNVGNVTLEEALDQLLAGTGLSYEIGGNTIVLRPK 51
 
Name Accession Description Interval E-value
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 496-720 6.06e-37

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 141.60  E-value: 6.06e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 496 NSGQISPFGVNYDATQPGNPATVRPGRNFNV--PQAFLAQIRANVTSGNAKILTDPTLVVQEGQVGAVKLVENVVTSVNT 573
Cdd:COG1450  107 GNGGGVNFGGTGSLGSLAAAGSLGGGLNLGLlgGGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPYVTGS 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 574 SIDQLSGVRTTTPVIEPAGLTLSVVvDKIDDNGFITLQVEPNISAPGTPqvfrsgVGADNVITPLVERTVSSGKIRLRDG 653
Cdd:COG1450  187 TTTSSTGNPTTTIEYVDVGITLKVT-PQINEDGTVTLDINPEVSSVTGS------TTGGGNGLPTINKREISTTVRVKDG 259

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505033514 654 QTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTPQILDDSEGYSGFGYNY 720
Cdd:COG1450  260 QTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALTEEY 326
Secretin pfam00263
Bacterial type II and III secretion system protein;
536-707 9.37e-33

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 123.78  E-value: 9.37e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  536 ANVTSGNAKILTDPTLVVQEGQVGAVKLVENVVTSVNTsidQLSGVRTTTPVIEPAGLTLSVVVDkIDDNGFITLQVEPN 615
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTS---TTGGTTTTTVEFKDAGLSLKVTPQ-VTPDGTITLKINPE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  616 ISAPGtpqvfrsgvGADNVITPLVERTVSSGKIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKAR 695
Cdd:pfam00263  77 VSSPD---------GNGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEK 147

                         170
                  ....*....|..
gi 505033514  696 SEVVVILTPQIL 707
Cdd:pfam00263 148 TELLIFITPRIV 159
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 480-713 5.86e-21

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 97.46  E-value: 5.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  480 GRTVTRTLQGIPLGSPNSGQISPFGVNYDATQPGNPATVrpGRNFNVPQaFLAQIRANVTSGNAKILTDPTLVVQEGQVG 559
Cdd:TIGR02517 364 FSTGSPNSGSLLGASASAISLGSAGIGLLVTSSSTTSGV--GGTGGGPN-LGVLLNALKQDTGFNVLSTPSLLTLDNQEA 440

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  560 AVKLVENVV---TSVNTSIDQLSGVRTTTPVIEPAGLTLSVVvDKIDDNGFITLQVEPNISAPGTPQVfrsGVGADNVIT 636
Cdd:TIGR02517 441 EINVGQEVPvltGSYNTGTGGTNANPFNTYQRKDVGIKLKVT-PQINEGGTVRLEIYQEVSSVAPTTV---GSAASGPTF 516

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505033514  637 PlvERTVSSgKIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTPQILDDSEGY 713
Cdd:TIGR02517 517 N--KREIKT-VVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDA 590
hofQ PRK13568
DNA uptake porin HofQ;
598-710 1.68e-15

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 79.01  E-value: 1.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 598 VVDKIDDNGFITLQVEPNISAPGtpQVFRSGVGAdnviTPLVERTVSSGKIRLRDGQTLILSGIIQDGERTTVSKVPILG 677
Cdd:PRK13568 275 VTPKILRNGRITLKLKISQNMPG--RTIKRGEGE----MLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLG 348

                         90       100       110
                 ....*....|....*....|....*....|...
gi 505033514 678 DLPIIGSLFRSTVKDKARSEVVVILTPQILDDS 710
Cdd:PRK13568 349 DIPLLGALFRQDTQQQSRRELVIFITPKLISAD 381
STN pfam07660
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 152-189 3.83e-03

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 429580 [Multi-domain]  Cd Length: 51  Bit Score: 35.95  E-value: 3.83e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 505033514  152 TVSLDLENEPIQDVFNSVLLISGLKANRQGNTVFVGNK 189
Cdd:pfam07660  14 SVSLNVGNVTLEEALDQLLAGTGLSYEIGGNTIVLRPK 51
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 136-186 8.97e-03

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 34.79  E-value: 8.97e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 505033514   136 LNIIFTDQSGtegSGATVSLDLENEPIQDVFNSVLLISGLKANRQGNTVFV 186
Cdd:smart00965   1 LNFVYDPALV---AGRRVSLLLGNVTVEQALDRLLAGTGLTYRRIGGNTIV 48
 
Name Accession Description Interval E-value
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 496-720 6.06e-37

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 141.60  E-value: 6.06e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 496 NSGQISPFGVNYDATQPGNPATVRPGRNFNV--PQAFLAQIRANVTSGNAKILTDPTLVVQEGQVGAVKLVENVVTSVNT 573
Cdd:COG1450  107 GNGGGVNFGGTGSLGSLAAAGSLGGGLNLGLlgGGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPYVTGS 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 574 SIDQLSGVRTTTPVIEPAGLTLSVVvDKIDDNGFITLQVEPNISAPGTPqvfrsgVGADNVITPLVERTVSSGKIRLRDG 653
Cdd:COG1450  187 TTTSSTGNPTTTIEYVDVGITLKVT-PQINEDGTVTLDINPEVSSVTGS------TTGGGNGLPTINKREISTTVRVKDG 259

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505033514 654 QTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTPQILDDSEGYSGFGYNY 720
Cdd:COG1450  260 QTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALTEEY 326
Secretin pfam00263
Bacterial type II and III secretion system protein;
536-707 9.37e-33

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 123.78  E-value: 9.37e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  536 ANVTSGNAKILTDPTLVVQEGQVGAVKLVENVVTSVNTsidQLSGVRTTTPVIEPAGLTLSVVVDkIDDNGFITLQVEPN 615
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTS---TTGGTTTTTVEFKDAGLSLKVTPQ-VTPDGTITLKINPE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  616 ISAPGtpqvfrsgvGADNVITPLVERTVSSGKIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKAR 695
Cdd:pfam00263  77 VSSPD---------GNGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEK 147

                         170
                  ....*....|..
gi 505033514  696 SEVVVILTPQIL 707
Cdd:pfam00263 148 TELLIFITPRIV 159
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 479-704 3.52e-21

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 97.25  E-value: 3.52e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 479 VGRTVTRTLqGIPLGSPNSGQISPFGVNYDATQPGNPATVRPG--RNFNVPQA-FLAQIRANVTSGNAKILTDPTLVVQE 555
Cdd:COG4964  186 VSRSVLKQL-GINWSGLGSSGGFSFGLLTGGLLSGLLGGATAGafSGFGFGNAsISATLDALEQNGLARVLAEPNLTALS 264

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 556 GQ-----VGAvklvE-NVVTSvntsidqlSGVRTTTPVIEPAGLTLSVVvDKIDDNGFITLQVEPNISAPgTPQVfrsGV 629
Cdd:COG4964  265 GEtasflAGG----EfPIPVA--------QGDGTITVEYKEFGVSLNFT-PTVLSNGRISLKVAPEVSEL-DPSN---AV 327

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505033514 630 GADNVITP-LVERTVSSGkIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTP 704
Cdd:COG4964  328 TLNGITIPgLTTRRAETT-VELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTP 402
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 480-713 5.86e-21

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 97.46  E-value: 5.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  480 GRTVTRTLQGIPLGSPNSGQISPFGVNYDATQPGNPATVrpGRNFNVPQaFLAQIRANVTSGNAKILTDPTLVVQEGQVG 559
Cdd:TIGR02517 364 FSTGSPNSGSLLGASASAISLGSAGIGLLVTSSSTTSGV--GGTGGGPN-LGVLLNALKQDTGFNVLSTPSLLTLDNQEA 440

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  560 AVKLVENVV---TSVNTSIDQLSGVRTTTPVIEPAGLTLSVVvDKIDDNGFITLQVEPNISAPGTPQVfrsGVGADNVIT 636
Cdd:TIGR02517 441 EINVGQEVPvltGSYNTGTGGTNANPFNTYQRKDVGIKLKVT-PQINEGGTVRLEIYQEVSSVAPTTV---GSAASGPTF 516

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 505033514  637 PlvERTVSSgKIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTPQILDDSEGY 713
Cdd:TIGR02517 517 N--KREIKT-VVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDA 590
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 496-709 1.25e-17

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 86.28  E-value: 1.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  496 NSGQISPFGVNYDAT----------QPGNPATVRPGRNFNVPQA---FLAQIRANVTSGNAKILTDPTLVVQEGqvgavk 562
Cdd:TIGR02516 246 DASDLSQLGVDWQATlgagdrqtgfNVSAGAGLGATGSSIVTSDgdyFMARVNALEQTGKAKIVSRPSVLTLEN------ 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  563 lVENVVTSVNTSIDQLSGVRTTTpvIEP--AGLTLSVVVDKIDDNGfITLQVEPNISAPGTPQVFRSGVGADNVitPLVE 640
Cdd:TIGR02516 320 -VQAVLDNNRTFYVKVSGERVAD--LESvtAGTSLRVTPRVIGDEG-AQRQIKLNVDIEDGQQKTDGTSTVDAL--PEIK 393

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505033514  641 RTVSSGKIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTPQILDD 709
Cdd:TIGR02516 394 RTEINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIVRD 462
hofQ PRK13568
DNA uptake porin HofQ;
598-710 1.68e-15

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 79.01  E-value: 1.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 598 VVDKIDDNGFITLQVEPNISAPGtpQVFRSGVGAdnviTPLVERTVSSGKIRLRDGQTLILSGIIQDGERTTVSKVPILG 677
Cdd:PRK13568 275 VTPKILRNGRITLKLKISQNMPG--RTIKRGEGE----MLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLG 348

                         90       100       110
                 ....*....|....*....|....*....|...
gi 505033514 678 DLPIIGSLFRSTVKDKARSEVVVILTPQILDDS 710
Cdd:PRK13568 349 DIPLLGALFRQDTQQQSRRELVIFITPKLISAD 381
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 473-708 1.03e-14

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 76.97  E-value: 1.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  473 RDITNNVGRTVTRTLQGIPLGSPNSGQIsPFGVNYDATQPgnPATVRPGRNFNVPQAFLA-----QIRANVTSGNAKILT 547
Cdd:TIGR02515 195 NGNGNGTAGGIGGNNGTTATGAGGTGNP-PFGDNLNVNLA--TATTAAGISFALGKIGSGrlldlELSALESEGKGEIIS 271

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  548 DPTLVVQEGQVGAVKlvenvvTSVNTSIDQLSGVRTTTPVIEPAGLTLSVVvDKIDDNGFITLQV-----EPNISAPGTP 622
Cdd:TIGR02515 272 SPRVLTANNKEAKIE------QGTEIPYQQTSSSGATSVEFKEAVLSLEVT-PQITPDGRIIMDLlvskdSPGVVAQAGG 344

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514  623 QVFrsgvgadnvitPLVERTVSSgKIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVIL 702
Cdd:TIGR02515 345 GVP-----------AIDKQEINT-QVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKKTGKSDEKSELLIFI 412


                  ....*.
gi 505033514  703 TPQILD 708
Cdd:TIGR02515 413 TPRIVN 418
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 647-711 1.69e-14

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 76.82  E-value: 1.69e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505033514 647 KIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTPQILDDSE 711
Cdd:COG4796  505 QVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPRIVKDAL 569
IV PHA00019
phage assembly protein
 534-707 5.66e-14

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 74.85  E-value: 5.66e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 534 IRANVTSGNAKILTDPTLVVQEGQVGAVKLVENV--VTSVNTSIDQLSGVRTTTPVIEPAGLTLSVVvDKIDDNGFITLQ 611
Cdd:PHA00019 260 VKALENSSNSRVLSRPRILTLSGQSGYISVGQNVpfVTGRVTGEAANVNNPFQTIERKDVGVSLEVT-PVVMGDGQLVLD 338

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505033514 612 VEPNISAPGTPQVfrsgvgADNVITPlvERTVSSgKIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVK 691
Cdd:PHA00019 339 IDTKADSLSDSTI------ASDIITN--QRSLQT-TVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSD 409

                        170
                 ....*....|....*.
gi 505033514 692 DKARSEVVVILTPQIL 707
Cdd:PHA00019 410 SNEQRTLYVLLTARVI 425
hofQ PRK10560
outer membrane porin HofQ; Provisional
 647-708 2.67e-10

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 62.91  E-value: 2.67e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505033514 647 KIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTPQILD 708
Cdd:PRK10560 323 QVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVS 384
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
650-693 1.95e-09

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 60.47  E-value: 1.95e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 505033514 650 LRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDK 693
Cdd:PRK15346 437 LKAGQSLLLGGFIQDKQIESQNKIPLLGDIPLIGGLFRSTDKQS 480
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
637-710 3.29e-06

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 50.54  E-value: 3.29e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 505033514 637 PLVERTVSSGKIRLRDGQTLILSGIIQDGERTTVSKVPILGDLPIIGSLFRSTVKDKARSEVVVILTPQILDDS 710
Cdd:PRK15339 447 PEVGRTLISTIARVPQGKSLLIGGYTRDANTDEVQSIPFLGSLPLIGSLFRYSSKNKSNIVRVFLIEPREIVEP 520
STN pfam07660
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 152-189 3.83e-03

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 429580 [Multi-domain]  Cd Length: 51  Bit Score: 35.95  E-value: 3.83e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 505033514  152 TVSLDLENEPIQDVFNSVLLISGLKANRQGNTVFVGNK 189
Cdd:pfam07660  14 SVSLNVGNVTLEEALDQLLAGTGLSYEIGGNTIVLRPK 51
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 136-186 8.97e-03

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 34.79  E-value: 8.97e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 505033514   136 LNIIFTDQSGtegSGATVSLDLENEPIQDVFNSVLLISGLKANRQGNTVFV 186
Cdd:smart00965   1 LNFVYDPALV---AGRRVSLLLGNVTVEQALDRLLAGTGLTYRRIGGNTIV 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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