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Conserved domains on  [gi|504777339|ref|WP_014964441|]
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MULTISPECIES: NADH-quinone oxidoreductase subunit B [Nitrosopumilus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 28-172 1.38e-90

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440146  Cd Length: 152  Bit Score: 260.88  E-value: 1.38e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  28 KPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPE 107
Cdd:COG0377    2 TTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPE 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504777339 108 PKYVIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKRMKARK 172
Cdd:COG0377   82 PKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRG 146
 
Name Accession Description Interval E-value
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 28-172 1.38e-90

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 260.88  E-value: 1.38e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  28 KPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPE 107
Cdd:COG0377    2 TTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPE 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504777339 108 PKYVIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKRMKARK 172
Cdd:COG0377   82 PKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRG 146
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
33-170 5.21e-77

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 227.55  E-value: 5.21e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  33 AINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIeaF-GSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYV 111
Cdd:PRK06411  28 LVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMV--FrASPRQADLMIVAGTLTNKMAPALRRLYDQMPEPKWV 105

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 504777339 112 IAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKRMKA 170
Cdd:PRK06411 106 ISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSER 164
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 32-167 3.89e-75

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 221.46  E-value: 3.89e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339   32 YAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYV 111
Cdd:TIGR01957   9 KLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQMPEPKWV 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 504777339  112 IAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKR 167
Cdd:TIGR01957  89 ISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKR 144
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
52-161 4.08e-36

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 121.92  E-value: 4.08e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339   52 CSVEFGAASSPRYDVERFgIIEAFGSL---------RQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGG 122
Cdd:pfam01058   4 CTISLLALHPPLLDLLDL-ISLRYGIPlmaspreipEGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGG 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 504777339  123 LY----FDSYNVlPGIDGVIPVDVYVPGCPPRPETLIQGCMLL 161
Cdd:pfam01058  83 IPaagnNPSYGV-RPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 28-172 1.38e-90

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 260.88  E-value: 1.38e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  28 KPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPE 107
Cdd:COG0377    2 TTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPE 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504777339 108 PKYVIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKRMKARK 172
Cdd:COG0377   82 PKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRG 146
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
33-170 5.21e-77

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 227.55  E-value: 5.21e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  33 AINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIeaF-GSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYV 111
Cdd:PRK06411  28 LVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMV--FrASPRQADLMIVAGTLTNKMAPALRRLYDQMPEPKWV 105

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 504777339 112 IAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKRMKA 170
Cdd:PRK06411 106 ISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSER 164
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 32-167 3.89e-75

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 221.46  E-value: 3.89e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339   32 YAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYV 111
Cdd:TIGR01957   9 KLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQMPEPKWV 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 504777339  112 IAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKR 167
Cdd:TIGR01957  89 ISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKR 144
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
1-166 3.29e-62

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 190.12  E-value: 3.29e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339   1 MLKDLVTpENANVFVGKLGDIlekaidkplgyaINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQ 80
Cdd:PRK14816  15 MVKELNE-GGANVFVGVLDDL------------INWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  81 CDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCML 160
Cdd:PRK14816  82 ADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQ 161


                 ....*.
gi 504777339 161 LQEKIK 166
Cdd:PRK14816 162 LQRKVK 167
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
35-172 1.95e-59

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 185.96  E-value: 1.95e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  35 NWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIiEAF-GSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIA 113
Cdd:PRK14819  26 NWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGA-ELFrASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVIS 104

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 504777339 114 MGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKRMKARK 172
Cdd:PRK14819 105 MGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQSLGR 163
ndhK CHL00023
NADH dehydrogenase subunit K
 35-167 1.09e-58

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 182.60  E-value: 1.09e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  35 NWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAfGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAM 114
Cdd:CHL00023  27 NWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR-SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 105

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504777339 115 GACAITGGLY-FDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKR 167
Cdd:CHL00023 106 GACTITGGMFsTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 159
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
41-170 6.34e-58

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 177.67  E-value: 6.34e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  41 SLWPVHIET-AC--CSVEFGAASSPRYDVERFGIIeaF-GSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGA 116
Cdd:COG3260    6 SLWIRHVDAgSCngCEIEILALLTPRYDLERFGIK--FvASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVGD 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504777339 117 CAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKRMKA 170
Cdd:COG3260   84 CACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
33-172 6.57e-58

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 179.25  E-value: 6.57e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  33 AINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVI 112
Cdd:PRK14820  26 VIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSERPSFSPRQADMLMVMGTIAKKMAPVLKQVYLQMAEPRWVV 105

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339 113 AMGACAITGGLyFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKRMKARK 172
Cdd:PRK14820 106 AVGACASSGGI-FDTYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNESLRR 164
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 33-172 1.36e-55

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 173.17  E-value: 1.36e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  33 AINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVI 112
Cdd:PRK14815  26 AINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAGTVTYKMALAVRRIYDQMPEPKWVI 105

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339 113 AMGACAITGGLYfDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKRMKARK 172
Cdd:PRK14815 106 AMGACASSGGMY-RSYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTERAAR 164
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
20-167 2.01e-55

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 186.52  E-value: 2.01e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  20 DILEKAIDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLR 99
Cdd:PRK13292   2 TIPENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVIAGTVFKKMAPSIL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504777339 100 LVYDQMPEPKYVIAMGACAITGGLYfDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKR 167
Cdd:PRK13292  82 RLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRR 148
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 19-166 6.04e-54

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 168.98  E-value: 6.04e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  19 GDILEKAIDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAfGSLRQCDLVVVQGTITRKMAPRL 98
Cdd:PRK14818  10 GGDVTLLHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPR-ASPRQADFMIVAGTLTYKMAERA 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504777339  99 RLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIK 166
Cdd:PRK14818  89 RLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVR 156
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 18-172 3.18e-53

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 167.51  E-value: 3.18e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  18 LGDILEKAidkPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPR 97
Cdd:PRK14814  14 LGDMFQLG---NLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSFSPRQADMILVLGTITYKMAPV 90

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504777339  98 LRLVYDQMPEPKYVIAMGACAITGGLyFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIKR--MKARK 172
Cdd:PRK14814  91 LRQIYDQMAEPKFVISVGACASSGGM-FHTYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKTqgLEARR 166
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 34-166 3.41e-53

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 167.37  E-value: 3.41e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  34 INWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAfGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIA 113
Cdd:PRK14813  22 LNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPR-SSPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLS 100

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504777339 114 MGACAITGGLYFD-SYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIK 166
Cdd:PRK14813 101 MGSCSNCGGPYWEhGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIR 154
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
22-166 2.26e-51

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 162.44  E-value: 2.26e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  22 LEKAIDKPLGyainWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLV 101
Cdd:PRK14817  21 LQGLVSKSLG----WARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVVGTVNCKQAPILQRV 96

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504777339 102 YDQMPEPKYVIAMGACAITGGLYfDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCMLLQEKIK 166
Cdd:PRK14817  97 YEQMADPKWVMAFGVCASSGGFY-DNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQ 160
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
52-161 4.08e-36

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 121.92  E-value: 4.08e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339   52 CSVEFGAASSPRYDVERFgIIEAFGSL---------RQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGG 122
Cdd:pfam01058   4 CTISLLALHPPLLDLLDL-ISLRYGIPlmaspreipEGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGG 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 504777339  123 LY----FDSYNVlPGIDGVIPVDVYVPGCPPRPETLIQGCMLL 161
Cdd:pfam01058  83 IPaagnNPSYGV-RPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
81-156 4.18e-09

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 53.78  E-value: 4.18e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504777339  81 CDLVVVQGTITRK----MAPRLRLVydqmpePKYVIAMGACAITGGL----------------YFDSYNVLPGIDG---- 136
Cdd:COG1941   53 VDVALVEGSIRNEeneeRLKEIREK------SKILVALGACAVTGGIpalrnlydleellervYGETPSTNPQIPGeelp 126

                         90       100       110
                 ....*....|....*....|....*....|.
gi 504777339 137 -----------VIPVDVYVPGCPPRPETLIQ 156
Cdd:COG1941  127 elldrvrplseVVKVDYELPGCPPDPDQILE 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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