|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
2-291 |
1.03e-99 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 295.04 E-value: 1.03e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 2 ELFKQARVLSFMRYSNYGVILSAILVLMALGLLFFKGFSLGIDFAGGSVVQVRYAQNAPIKEVRELFEKeARFKGVQVSE 81
Cdd:COG0341 1 RLFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEE-AGLGDASVQT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 82 FGSKEEILIKFPFIETAENEDLNIIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFA 161
Cdd:COG0341 80 FGSDNDVLIRTPPLDGESAEEVEKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 162 LASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLL 241
Cdd:COG0341 160 VGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTIN 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 504472197 242 TSLTVFFVVLILCVFGSKIIIGFSLPMLVGTIVGTYSSMFIAPKVAVLLG 291
Cdd:COG0341 240 TSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLG 289
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
38-283 |
1.78e-91 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 272.61 E-value: 1.78e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 38 GFSLGIDFAGGSVVQVRYAQNAPIKEVRELFEKeARFKGVQVSEFGSKEEILIKFPFIETAENEDLNIIVANILKP-SGD 116
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEK-AGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELREALEEALKNvDPD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 117 FEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLT 196
Cdd:TIGR00966 80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 197 LIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLVGTIVGT 276
Cdd:TIGR00966 160 IIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGT 239
|
....*..
gi 504472197 277 YSSMFIA 283
Cdd:TIGR00966 240 YSSIFIA 246
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
12-313 |
5.43e-78 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 252.46 E-value: 5.43e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 12 FMRYSNYGVILSAILVLMALGLLFFKGFSLGIDFAGGSVVQVRYAQNAPIKEVRELFEkEARFKGVQVSEFGSKE-EILI 90
Cdd:PRK13024 451 FVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLK-ELGLGEVNIVTFGSDNnQVLV 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 91 KFPFIETAENEDLNIIVANI---LKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVA 167
Cdd:PRK13024 530 RTYGILSDDEEADTEIVAKLknaLKNDKGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAILA 609
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 168 LLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLLTSLTVF 247
Cdd:PRK13024 610 LLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLTTL 689
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504472197 248 FVVLILCVFGSKIIIGFSLPMLVGTIVGTYSSMFIAPKVAVLLGfdmEKYYDNEARKIKKAQEKEK 313
Cdd:PRK13024 690 LVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLE---KRRLKKKKKRKKVKKWEVE 752
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
106-293 |
1.07e-61 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 194.75 E-value: 1.07e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 106 IVANILKPSG-DFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALLHDVIIVASSVILFKI 184
Cdd:pfam02355 1 VVEALLKNVGpDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 185 DMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGF 264
Cdd:pfam02355 81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160
|
170 180
....*....|....*....|....*....
gi 504472197 265 SLPMLVGTIVGTYSSMFIAPKVAVLLGFD 293
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLGER 189
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
139-213 |
2.22e-06 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 49.39 E-value: 2.22e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504472197 139 LSLILALIAIMVYVSFRYEWRFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIR 213
Cdd:NF037998 961 ISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAK 1035
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
117-274 |
9.68e-05 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 44.00 E-value: 9.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 117 FEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWrFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLT 196
Cdd:NF037998 427 FKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAYRL-LGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFI 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 197 LIGYSINDTIIIFDRIREEMLAKKskhvsQAIDEAISSTLTRTLLTSLTVFFVVLI--LCVF--GSKIIIGFSLPMLVGT 272
Cdd:NF037998 506 AIGLVLESCSLLFEAFKKHLYKNK-----RSIEESFKIANKETIGIIVDALVVLLIpnLSLFwiGSNSIKSFATILLVGV 580
|
..
gi 504472197 273 IV 274
Cdd:NF037998 581 II 582
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
2-291 |
1.03e-99 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 295.04 E-value: 1.03e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 2 ELFKQARVLSFMRYSNYGVILSAILVLMALGLLFFKGFSLGIDFAGGSVVQVRYAQNAPIKEVRELFEKeARFKGVQVSE 81
Cdd:COG0341 1 RLFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEE-AGLGDASVQT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 82 FGSKEEILIKFPFIETAENEDLNIIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFA 161
Cdd:COG0341 80 FGSDNDVLIRTPPLDGESAEEVEKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 162 LASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLL 241
Cdd:COG0341 160 VGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTIN 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 504472197 242 TSLTVFFVVLILCVFGSKIIIGFSLPMLVGTIVGTYSSMFIAPKVAVLLG 291
Cdd:COG0341 240 TSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLG 289
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
38-283 |
1.78e-91 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 272.61 E-value: 1.78e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 38 GFSLGIDFAGGSVVQVRYAQNAPIKEVRELFEKeARFKGVQVSEFGSKEEILIKFPFIETAENEDLNIIVANILKP-SGD 116
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEK-AGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELREALEEALKNvDPD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 117 FEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLT 196
Cdd:TIGR00966 80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 197 LIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLVGTIVGT 276
Cdd:TIGR00966 160 IIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGT 239
|
....*..
gi 504472197 277 YSSMFIA 283
Cdd:TIGR00966 240 YSSIFIA 246
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
12-313 |
5.43e-78 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 252.46 E-value: 5.43e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 12 FMRYSNYGVILSAILVLMALGLLFFKGFSLGIDFAGGSVVQVRYAQNAPIKEVRELFEkEARFKGVQVSEFGSKE-EILI 90
Cdd:PRK13024 451 FVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLK-ELGLGEVNIVTFGSDNnQVLV 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 91 KFPFIETAENEDLNIIVANI---LKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVA 167
Cdd:PRK13024 530 RTYGILSDDEEADTEIVAKLknaLKNDKGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAILA 609
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 168 LLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLLTSLTVF 247
Cdd:PRK13024 610 LLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLTTL 689
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504472197 248 FVVLILCVFGSKIIIGFSLPMLVGTIVGTYSSMFIAPKVAVLLGfdmEKYYDNEARKIKKAQEKEK 313
Cdd:PRK13024 690 LVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLE---KRRLKKKKKRKKVKKWEVE 752
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
106-293 |
1.07e-61 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 194.75 E-value: 1.07e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 106 IVANILKPSG-DFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALLHDVIIVASSVILFKI 184
Cdd:pfam02355 1 VVEALLKNVGpDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 185 DMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGF 264
Cdd:pfam02355 81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160
|
170 180
....*....|....*....|....*....
gi 504472197 265 SLPMLVGTIVGTYSSMFIAPKVAVLLGFD 293
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLGER 189
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
3-289 |
5.65e-60 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 205.72 E-value: 5.65e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 3 LFKQARVlSFMRYSNYGVILSAILVLMALGLLFFKGFSLGIDFAGGSVVQVRYAQ-NAPIKEVRELFEkEARFKGVQVSE 81
Cdd:PRK14726 541 LFEGANI-RFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQgNADIADIRARLN-ELNLGEVQVER 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 82 FGSKEEILIKFPFIETAENEDLNIIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFA 161
Cdd:PRK14726 619 FGSPRDALIRIASQDGGENAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFA 698
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 162 LASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLL 241
Cdd:PRK14726 699 VGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVL 778
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 504472197 242 TSLTVFFVVLILCVFGSKIIIGFSLPMLVGTIVGTYSSMFIAPKVAVL 289
Cdd:PRK14726 779 TSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLIV 826
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
10-297 |
1.67e-52 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 174.66 E-value: 1.67e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 10 LSFMRYSnyGVILSAILVLMALGLLFFKGFSLGIDFAGGSVVQVRYAQNAPIKEVRELFEkeARFKG-VQVSEFGSKEEI 88
Cdd:PRK13021 6 LTKWRYI--SSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLN--AAYQQeVSVISASEPGRW 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 89 LIKFPFIETAENedlNIIVANILKPSGDfEIRKFDT--VGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVV 166
Cdd:PRK13021 82 VLRYAPADTAQS---NVDIQQALAPLGT-EVQVLNSsiVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 167 ALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLLTSLTV 246
Cdd:PRK13021 158 ALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTT 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 504472197 247 FFVVLILCVFGSKIIIGFSLPMLVGTIVGTYSSMFIAPKVAVLLGFDMEKY 297
Cdd:PRK13021 238 LMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHY 288
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
116-279 |
3.33e-47 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 157.42 E-value: 3.33e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 116 DFEIRKFD---TVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALLHDVIIVASSVILFKIDMNLEVIA 192
Cdd:TIGR00916 25 NAKVISAPvvgTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 193 ALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLVGT 272
Cdd:TIGR00916 105 GLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGV 184
|
....*..
gi 504472197 273 IVGTYSS 279
Cdd:TIGR00916 185 IAGTYSS 191
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
10-292 |
5.04e-40 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 149.00 E-value: 5.04e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 10 LSFMRYSNYGVILSAILVLMALGLLFFKGFSLGIDFAGGSVVQVRYAQ-NAPIKEVRELFeKEARFKGVQVSEFGSKEEI 88
Cdd:PRK13023 453 IPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNgDANLEDINERL-AELNIDSARVLPAKSPRSA 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 89 LIKFPFIETAENEDLNIIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVAL 168
Cdd:PRK13023 532 LVIIGSQEVGDDAEQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLST 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 169 LHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQAIDEAISSTLTRTLLTSLTVFF 248
Cdd:PRK13023 612 LHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFL 691
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 504472197 249 VVLILCVFGSKIIIGFSLPMLVGTIVGTYSSMFIAPKVAVLLGF 292
Cdd:PRK13023 692 AHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGL 735
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
20-284 |
1.15e-32 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 128.05 E-value: 1.15e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 20 VILSAILVLMALGLLFFKGFS-LGIDFAGGSVVQVRYAQNAPIKEVRELFEKEARFKGV-------QVSEFGSKEEILIK 91
Cdd:PRK12911 1092 VVSGSVLVLGCVALGFGAWNSvLGMDFKGGYALTLDPSDVCEYDVEQMRSKLRKKFQQIglssrdfRIRTFDSSEKIKIY 1171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 92 F----------PFIETAENEDLNI-IVANILKPSG-DFEIRKFDT-------VGPRVGSELKEKGILSLILALIAIMVYV 152
Cdd:PRK12911 1172 FsqnaldrveaIEGAGSEQSDHHLaLVLGVLSDTGsDTSSEVFDAtqnfwfkVSGQLSNKMRTQAVIALFGALGIILLYV 1251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 153 SFRYEWRFALASVVALLHDV-----IIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSKHVSQA 227
Cdd:PRK12911 1252 SLRFEWRYAFSAICALIHDLlatcaVLVALHFFLQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPIL 1331
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 504472197 228 IDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLVGTIVGTYSSMFIAP 284
Cdd:PRK12911 1332 INDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAP 1388
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
20-212 |
4.59e-17 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 79.98 E-value: 4.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 20 VILSAILVLMALGLLFFKGFSLGIDFAGGSVVQVrYAQNAPIKEVRELFEKEArfkGVQVSEFGSKEEIlIKFPFietAE 99
Cdd:PRK08578 23 VLLLSLLLLGGTFATTGSPVKLGIDFTGGTEITI-QTNDASPDELESALSGEP---GVDVRKGSGNGYI-ITFGS---GD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 100 NEDLNIIVANILKPSGDFEIRKF----DTVGPRVGSELKEKGILSLILALI--AIMVYVSFRyewRF--ALASVVALLHD 171
Cdd:PRK08578 95 DTDVDKLADAVKEFFNVDSISELnyseKQIGPTFGSQFQEQALKAVGFAFIgmAVVVFLIFR---TPvpSLAVILSAFSD 171
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 504472197 172 VIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRI 212
Cdd:PRK08578 172 IIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLTTRV 212
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
108-283 |
4.32e-15 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 75.40 E-value: 4.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 108 ANILKpSG----DFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWrFALASVVALLHDVIIVASSVILFK 183
Cdd:TIGR01129 218 ALVLR-SGalpaPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL-FGLIAAIALVINIVLILAILSAFG 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 184 IDMNLEVIAALLTLIGYSINDTIIIFDRIREEMlaKKSKHVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIG 263
Cdd:TIGR01129 296 ATLTLPGIAGLILTIGMAVDANVLIYERIKEEL--RLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKG 373
|
170 180
....*....|....*....|
gi 504472197 264 FSLPMLVGTIVGTYSSMFIA 283
Cdd:TIGR01129 374 FAVTLAIGIIASLFTALVFT 393
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
124-283 |
3.59e-14 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 72.46 E-value: 3.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 124 TVGPRVGSELKEKGILSLILALIAIMVYVSFRYeWRFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSIN 203
Cdd:COG0342 260 TVGPTLGADSIEKGLIAGLIGLLLVALFMLLYY-RLPGLVANIALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 204 DTIIIFDRIREEMLAKKSkhVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLVGTIVgtysSMFIA 283
Cdd:COG0342 339 ANVLIFERIREELRAGRS--LRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVKGFAVTLILGILI----SMFTA 412
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
97-283 |
1.15e-12 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 68.33 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 97 TAENEDLniivANILKpSG----DFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEwRFALASVVALLHDV 172
Cdd:PRK05812 260 AEEARDL----ALLLR-AGalpaPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYR-LFGLIANIALVANL 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 173 IIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLAKKSkhVSQAIDEAISSTLTRTLLTSLTVFFVVLI 252
Cdd:PRK05812 334 VLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRS--LRSAIEAGFKRAFSTILDSNITTLIAAII 411
|
170 180 190
....*....|....*....|....*....|.
gi 504472197 253 LCVFGSKIIIGFSLPMLVGTIVgtysSMFIA 283
Cdd:PRK05812 412 LYALGTGPVKGFAVTLGIGILT----SMFTA 438
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
124-273 |
1.38e-11 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 65.51 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 124 TVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWrFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSIN 203
Cdd:PRK14726 361 TVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGF-LGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVD 439
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 204 DTIIIFDRIREEmlAKKSKHVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLVGTI 273
Cdd:PRK14726 440 SNVLIYERIREE--EKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGIL 507
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
118-283 |
9.84e-11 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 62.95 E-value: 9.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 118 EIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALLHDVIIVASSVILfKIDMNLEVIAALLTL 197
Cdd:PRK12911 892 EVLSEEVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYL-DAPLTLSGLAGIVLA 970
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 198 IGYSINDTIIIFDRIREEMLAKKSkhVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMlvgtIVGTY 277
Cdd:PRK12911 971 MGMAVDANVLVFERIREEYLLSRS--LSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTL----IIGIF 1044
|
....*.
gi 504472197 278 SSMFIA 283
Cdd:PRK12911 1045 SSMFTA 1050
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
124-283 |
1.99e-09 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 58.70 E-value: 1.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 124 TVGPRVGSELKEKGILSLILALIAIMVYVSFRYEwRFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSIN 203
Cdd:PRK13024 255 SVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYG-LPGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVD 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 204 DTIIIFDRIREEMLAKKSkhVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLVGTIVGTYSSMFIA 283
Cdd:PRK13024 334 ANVLIFERIKEELRKGKS--LKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLT 411
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
123-222 |
3.61e-07 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 51.41 E-value: 3.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 123 DTVGPRVGSELKEKGILSLILALIAIMVYVSFRY-EWRFALASVVALLHDVIIV--ASSVILFKIDmnLEVIAALLTLIG 199
Cdd:PRK08343 249 GSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYrEPRIALPMVITSLSEVIIIlgFAALIGWQLD--LASIAGIIAVIG 326
|
90 100
....*....|....*....|...
gi 504472197 200 YSINDTIIIFDRIREEMLAKKSK 222
Cdd:PRK08343 327 TGVDDLIIITDEVLHEGKVPSRK 349
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
124-271 |
1.19e-06 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 50.00 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 124 TVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWrFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSIN 203
Cdd:PRK13023 267 TIASALGEDYASAAVLAALLAALVVGLFMVLSYGI-LGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVD 345
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504472197 204 DTIIIFDRIREEMlaKKSKHVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLVG 271
Cdd:PRK13023 346 AHILIYERVREDR--RKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIG 411
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
33-59 |
1.65e-06 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 43.81 E-value: 1.65e-06
10 20
....*....|....*....|....*..
gi 504472197 33 LLFFKGFSLGIDFAGGSVVQVRYAQNA 59
Cdd:pfam07549 1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
139-213 |
2.22e-06 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 49.39 E-value: 2.22e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504472197 139 LSLILALIAIMVYVSFRYEWRFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIR 213
Cdd:NF037998 961 ISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAK 1035
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
61-303 |
4.54e-05 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 45.24 E-value: 4.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 61 IKEVRELFEKEARFKGVQVSEFGSKEEILIKFPFIETAENEDLNIIVANILKPSGDFEIRKFDTV---GPRVGSELKE-- 135
Cdd:COG1033 137 LAELREKVLSSPLYVGRLVSPDGKATLIVVTLDPDPLSSDLDRKEVVAEIRAIIAKYEDPGVEVYltgFPVLRGDIAEai 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 136 ----KGILSLILALIAIMVYVSFRYeWRFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDR 211
Cdd:COG1033 217 qsdlAIFFPLALLLILLLLFLFFRS-LRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIHLLNR 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 212 IREEMLAKKSKHvsQAIDEAIsstltrtlltsLTVFFVVLI-----------LCVFGSKIIIGFSLPMLVGTIVGTYSSM 280
Cdd:COG1033 296 YREERRKGLDKR--EALREAL-----------RKLGPPVLLtslttaigflsLLFSDIPPIRDFGIVAAIGVLLAFLTSL 362
|
250 260
....*....|....*....|...
gi 504472197 281 FIAPKVAVLLGFDMEKYYDNEAR 303
Cdd:COG1033 363 TLLPALLSLLPRPKPKTRRLKKP 385
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
117-274 |
9.68e-05 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 44.00 E-value: 9.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 117 FEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWrFALASVVALLHDVIIVASSVILFKIDMNLEVIAALLT 196
Cdd:NF037998 427 FKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAYRL-LGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFI 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 197 LIGYSINDTIIIFDRIREEMLAKKskhvsQAIDEAISSTLTRTLLTSLTVFFVVLI--LCVF--GSKIIIGFSLPMLVGT 272
Cdd:NF037998 506 AIGLVLESCSLLFEAFKKHLYKNK-----RSIEESFKIANKETIGIIVDALVVLLIpnLSLFwiGSNSIKSFATILLVGV 580
|
..
gi 504472197 273 IV 274
Cdd:NF037998 581 II 582
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
124-281 |
1.05e-04 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 43.91 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 124 TVGPRVGSELKEKGILSLILALIAIMVYVSFRYEwRFALASVVALlhdviiVASSVILFKI-------DMNLEVIAALLT 196
Cdd:PRK12933 429 TIGPSLGAENIENGFAALALGMGITLLFMALWYR-RLGWVANVAL------IANMVCLFGLlalipgaVLTLPGIAGLVL 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 197 LIGYSINDTIIIFDRIREEMlaKKSKHVSQAIDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLVGTIvgt 276
Cdd:PRK12933 502 TVGMAVDTNVLIFERIKDKL--KEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLL--- 576
|
....*
gi 504472197 277 ySSMF 281
Cdd:PRK12933 577 -TSMF 580
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
88-232 |
8.26e-04 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 41.00 E-value: 8.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 88 ILIKFPFIETAENEDLNIIVANILKPSGDFEIRKFDTVGP-----RVGSELKEKGILSLILA--LIAIMVYVSFRyEWRF 160
Cdd:COG1033 553 VTVRLKDLDSEEIKALVEEVRAFLAENFPPDGVEVTLTGSavlfaAINESVIESQIRSLLLAllLIFLLLLLAFR-SLRL 631
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504472197 161 ALASVVALLHDVIIVASSVILFKIDMNLE--VIAALLtlIGYSINDTIIIFDRIREEMLAKKSKHvsQAIDEAI 232
Cdd:COG1033 632 GLISLIPNLLPILLTFGLMGLLGIPLNIAtaVVASIA--LGIGVDYTIHFLSRYREERRKGGDLE--EAIRRAL 701
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
17-120 |
1.63e-03 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 39.86 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 17 NYGVILSAILVLMALGLLF--------FKGFSLGIDFAGGSVVQ---VRYAQNAPIKEVRELFEK---EARFKGVQVSEF 82
Cdd:PRK08343 10 DWRVLLLIVLVLASIVAIFppgggpggFTNLQYGLDLSGGSWIQlklEGPVTQETMDLVVEILESrlnALGLKDIKVYPV 89
|
90 100 110
....*....|....*....|....*....|....*...
gi 504472197 83 GSkEEILIKFPfietaeNEDLNIIVaNILKPSGDFEIR 120
Cdd:PRK08343 90 GD-QYIVVEVP------GVDADTAK-EIIEKQGVFEAR 119
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
138-317 |
4.03e-03 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 39.05 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 138 ILSLILALIAIMVYVSFRYEWRFALASVVaLLHDVIIVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEML 217
Cdd:TIGR00921 198 TMAISGILVVLVLLLDFKRWWRPLLPLVI-ILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERD 276
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504472197 218 AKKSKhvSQAIDEAISS--TLTRTLLTSLTVFFVVLILCVFGSkiIIGFSLPMLVGTIVGTYSSMFIAPKVAVLLG-FDM 294
Cdd:TIGR00921 277 IGRAK--GEAIVTAVRRtgRAVLIALLTTSAGFAALALSEFPM--VSEFGLGLVAGLITAYLLTLLVLPALLQSIDiGRE 352
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170 180
....*....|....*....|...
gi 504472197 295 EKYYDNEARKIKKAQEKEKMRRL 317
Cdd:TIGR00921 353 KVKKEIIAIGGKSSEIEEELSKV 375
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