|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-615 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 653.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 8 WKYLMLIAAILIGLLYALPNLYGedpavqitgvrgtaaneqtliqvqktlekdniqsksialengavlarfnnpdiqlra 87
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLRG--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 88 realvsalgdqyvvalNLAPATPKWLEAVGGEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNMDGIRNDLRQAKVPYSS 167
Cdd:PRK05812 24 ----------------ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYGG 87
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 168 IrkgdnysvEIRFRNADDRSQAEKiLLRKFQDlvfsngnnntmtavMTDERLREARNYAVSQNITIIRNRVNQLGVAEPL 247
Cdd:PRK05812 88 V--------EITFRDAEDRDKAIA-LLRKLSS--------------LTEAELKEITEEALEQAIEIIRNRVNELGVAEPV 144
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 248 VQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVnqsvdpaaaengrvpgdsevkydrngfpyvlykRVVLTGDHIT 327
Cdd:PRK05812 145 IQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------------------------PVILTGDDIT 191
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 328 DSTSGSDENGAPQVSIGLDSAGGSVMSDFTRDNQGKQMATLFveykdsgkkdaegrvilmkDEKVINAANISARF-GSQF 406
Cdd:PRK05812 192 DASASFDQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVL-------------------DGEVISAPVIQSAItGGSA 252
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 407 RITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYRKFGLIASTALFAN 486
Cdd:PRK05812 253 QITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVAN 332
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 487 LIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAII 566
Cdd:PRK05812 333 LVLILAVLSLL-GATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAII 411
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 504469677 567 LYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYG-GKRINKLSI 615
Cdd:PRK05812 412 LYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
85-615 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 567.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 85 LRAREALVSALGDQYVVALNL-APATPKWleavggePMKLGLDLRGGVHFLMEVDMDTALSKlqeqnmdgirndlrqakv 163
Cdd:COG0342 1 MKAKFLLWRLLLLLLVVALSLvAPNGPAK-------PIKLGLDLQGGVHLLLEVDTDAALDE------------------ 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 164 pyssirkgdnysveirfrnaddrsqaekillrkfqdlvfsngnnntmtavmTDERLREARNYAVSQNITIIRNRVNQLGV 243
Cdd:COG0342 56 ---------------------------------------------------DGDGIREVTEEALDQAIEILRNRVNELGV 84
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 244 AEPLVQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNQSVDPAAAengrVPGDSEVKYDRNGFPYVLYKRVVLTG 323
Cdd:COG0342 85 SEPVIQRQGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRDGQPYLLLGPVVLTG 160
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 324 DHITDSTSGSD-ENGAPQVSIGLDSAGGSVMSDFTRDNQGKQMATLFveykdsgkkdaegrvilmkDEKVINAANISARF 402
Cdd:COG0342 161 DDLTDASAGFDqQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVL-------------------DGEVISAPVIQEPI 221
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 403 -GSQFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYRKFGLIAST 481
Cdd:COG0342 222 tGGSAQITGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANI 301
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 482 ALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTL 561
Cdd:COG0342 302 ALALNVVLLLGVLSLL-GATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTL 380
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 504469677 562 ITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKRINKLSI 615
Cdd:COG0342 381 IAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
123-601 |
1.26e-175 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 503.74 E-value: 1.26e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 123 LGLDLRGGVHFLMEVDMDTALSKlqeqnmdgirndlrqakvpyssirkgdnysveirfrnaddrsqaekillrkfqdlvf 202
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVVL--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 203 sngnnntmtaVMTDERLREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGAERIVVELPGIQDTARAKEILGATATLEFR 282
Cdd:TIGR01129 24 ----------KLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFR 93
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 283 LVNQ-SVDPAAAENGRVPGDSEVKYDRNGFP--YVLYKRVVLTGDHITDSTSGSDE-NGAPQVSIGLDSAGGSVMSDFTR 358
Cdd:TIGR01129 94 LVDDeSTSPDDALAGNVPAGSELLDSRSGDPkyYLLKKSPVLTGDHITDATSSVDQrSGQPVVSFSLDSEGARIFGDFTQ 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 359 DNQGKQMATLFveykdsgkkdaegrvilmkDEKVINAANISARF-GSQFRITGITDPNEARQLSLLLRAGALIAPIQIVE 437
Cdd:TIGR01129 174 ANIGKRLAIVL-------------------DNKVVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQILE 234
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 438 ERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYRKFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVA 517
Cdd:TIGR01129 235 ERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIGMA 313
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 518 VDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGT 597
Cdd:TIGR01129 314 VDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFT 393
|
....
gi 504469677 598 RAIV 601
Cdd:TIGR01129 394 RLLL 397
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
2-103 |
6.47e-49 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 165.38 E-value: 6.47e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 2 LNRYPLWKYLMLIAAILIGLLYALPNLYGEDPAVQITGVRGTAA-NEQTLIQVQKTLEKDNIQSKSIALENGAVLARFNN 80
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGGAKvDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDS 80
|
90 100
....*....|....*....|...
gi 504469677 81 PDIQLRAREALVSALGDQYVVAL 103
Cdd:pfam13721 81 TDDQLKAKDVLQRALGDDYVVAL 103
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
463-612 |
3.93e-16 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 82.52 E-value: 3.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 463 ASILFMIIYYRKFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL-RNGRSVQQS 541
Cdd:NF037998 457 AIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWF-GLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLyKNKRSIEES 535
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504469677 542 IHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKRINK 612
Cdd:NF037998 536 FKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKK 606
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
433-594 |
1.00e-14 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 72.64 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 433 IQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYR-KFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIV 511
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 512 LTLAVAVDANVLINERIKEELR--NGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATS 589
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLRkkTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVG 171
|
....*
gi 504469677 590 MFTAI 594
Cdd:pfam02355 172 TYSSI 176
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
1-124 |
2.31e-06 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 46.92 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 1 MLNRYPLWKYLMLiaAILIGLLYALPNLYGEDPAVQITGVRGTAaneqTL---IQVQKTLEKDNIQSKSIALENGAVLAR 77
Cdd:PRK10629 6 MSLRQLAWLGAVL--LLLAALLLAWSALRQQESTLAIRAVHQGA----SLpdgFYVYQHLDANGIHIKSITPENDSLLIR 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 504469677 78 FNNPDIQLRAREALVSALGDQYVVAL-NLAPATPKWLEAVGGEPMKLG 124
Cdd:PRK10629 80 FDSPEQSAAAKEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-615 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 653.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 8 WKYLMLIAAILIGLLYALPNLYGedpavqitgvrgtaaneqtliqvqktlekdniqsksialengavlarfnnpdiqlra 87
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLRG--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 88 realvsalgdqyvvalNLAPATPKWLEAVGGEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNMDGIRNDLRQAKVPYSS 167
Cdd:PRK05812 24 ----------------ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYGG 87
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 168 IrkgdnysvEIRFRNADDRSQAEKiLLRKFQDlvfsngnnntmtavMTDERLREARNYAVSQNITIIRNRVNQLGVAEPL 247
Cdd:PRK05812 88 V--------EITFRDAEDRDKAIA-LLRKLSS--------------LTEAELKEITEEALEQAIEIIRNRVNELGVAEPV 144
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 248 VQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVnqsvdpaaaengrvpgdsevkydrngfpyvlykRVVLTGDHIT 327
Cdd:PRK05812 145 IQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------------------------PVILTGDDIT 191
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 328 DSTSGSDENGAPQVSIGLDSAGGSVMSDFTRDNQGKQMATLFveykdsgkkdaegrvilmkDEKVINAANISARF-GSQF 406
Cdd:PRK05812 192 DASASFDQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVL-------------------DGEVISAPVIQSAItGGSA 252
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 407 RITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYRKFGLIASTALFAN 486
Cdd:PRK05812 253 QITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVAN 332
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 487 LIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAII 566
Cdd:PRK05812 333 LVLILAVLSLL-GATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAII 411
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 504469677 567 LYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYG-GKRINKLSI 615
Cdd:PRK05812 412 LYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
2-606 |
0e+00 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 614.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 2 LNRYPLWKYLMLIAAILIGLLYALPNLYGEDPAVQITGVRGTAANEQTLiqvQKTLEKDNIQSKSIALENGAVLARFNNP 81
Cdd:PRK12933 10 LNHYSAWKYVVLIVTIIILLLSAIPTWYGEDAAVQVSAKAGLLLNVVEL---RQLLQAQGINVKRIDQKEGKTLIVLDDD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 82 DIQLRAREALVSALGDQYVVALNLAPATPKWLEAVGGEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNMDGIRNDLRQA 161
Cdd:PRK12933 87 SQQSQAKTLLSSMVKEPKELTLSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 162 KVPYSSIRKGDNYSVEIRFRNADDRSQAEKILLRKFQDLVFSNGNNNTMTAVMTDERLREARNYAVSQNITIIRNRVNQL 241
Cdd:PRK12933 167 RIRGVSVRLDDSDQLAVTTPDNDARSAVRQFIQQNYPGWQVTNSDDRGLQLKLSQQEKTKFRNLTVQQNLQIMRSRIEEL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 242 GVAEPLVQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNQSVDpaaaengrvpGDSEVKYDRNGFPYVLYKRVVL 321
Cdd:PRK12933 247 GITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFYEVKESGS----------VNAKVLKDKNGRPVYVARRPVL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 322 TGDHITDSTSGSDENGAPQVSIGLDSAGGSVMSDFTRDNQGKQMATLFVEYKdsgkKDAEGRVIlmKDEKVINAANISAR 401
Cdd:PRK12933 317 GGEHIVDARASLGEMGMAEVNISLDRAGGKKMSDFSRDNIGKPMATSYSEYS----RDEQGKTK--QSEEVISVATIQSQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 402 FGSQFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYRKFGLIAST 481
Cdd:PRK12933 391 LGDRFRITGAGSYQEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWVANV 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 482 ALFANLIMIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTL 561
Cdd:PRK12933 471 ALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTM 550
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 504469677 562 ITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYG 606
Cdd:PRK12933 551 ITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYG 595
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
85-615 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 567.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 85 LRAREALVSALGDQYVVALNL-APATPKWleavggePMKLGLDLRGGVHFLMEVDMDTALSKlqeqnmdgirndlrqakv 163
Cdd:COG0342 1 MKAKFLLWRLLLLLLVVALSLvAPNGPAK-------PIKLGLDLQGGVHLLLEVDTDAALDE------------------ 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 164 pyssirkgdnysveirfrnaddrsqaekillrkfqdlvfsngnnntmtavmTDERLREARNYAVSQNITIIRNRVNQLGV 243
Cdd:COG0342 56 ---------------------------------------------------DGDGIREVTEEALDQAIEILRNRVNELGV 84
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 244 AEPLVQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNQSVDPAAAengrVPGDSEVKYDRNGFPYVLYKRVVLTG 323
Cdd:COG0342 85 SEPVIQRQGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRDGQPYLLLGPVVLTG 160
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 324 DHITDSTSGSD-ENGAPQVSIGLDSAGGSVMSDFTRDNQGKQMATLFveykdsgkkdaegrvilmkDEKVINAANISARF 402
Cdd:COG0342 161 DDLTDASAGFDqQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVL-------------------DGEVISAPVIQEPI 221
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 403 -GSQFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYRKFGLIAST 481
Cdd:COG0342 222 tGGSAQITGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANI 301
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 482 ALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTL 561
Cdd:COG0342 302 ALALNVVLLLGVLSLL-GATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTL 380
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 504469677 562 ITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKRINKLSI 615
Cdd:COG0342 381 IAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
123-601 |
1.26e-175 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 503.74 E-value: 1.26e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 123 LGLDLRGGVHFLMEVDMDTALSKlqeqnmdgirndlrqakvpyssirkgdnysveirfrnaddrsqaekillrkfqdlvf 202
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVVL--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 203 sngnnntmtaVMTDERLREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGAERIVVELPGIQDTARAKEILGATATLEFR 282
Cdd:TIGR01129 24 ----------KLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFR 93
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 283 LVNQ-SVDPAAAENGRVPGDSEVKYDRNGFP--YVLYKRVVLTGDHITDSTSGSDE-NGAPQVSIGLDSAGGSVMSDFTR 358
Cdd:TIGR01129 94 LVDDeSTSPDDALAGNVPAGSELLDSRSGDPkyYLLKKSPVLTGDHITDATSSVDQrSGQPVVSFSLDSEGARIFGDFTQ 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 359 DNQGKQMATLFveykdsgkkdaegrvilmkDEKVINAANISARF-GSQFRITGITDPNEARQLSLLLRAGALIAPIQIVE 437
Cdd:TIGR01129 174 ANIGKRLAIVL-------------------DNKVVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQILE 234
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 438 ERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYRKFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVA 517
Cdd:TIGR01129 235 ERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIGMA 313
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 518 VDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGT 597
Cdd:TIGR01129 314 VDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFT 393
|
....
gi 504469677 598 RAIV 601
Cdd:TIGR01129 394 RLLL 397
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
219-604 |
2.21e-125 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 387.28 E-value: 2.21e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 219 LREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNQSVDPAaaengrv 298
Cdd:PRK13024 53 GKKADREALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVTDPPPPG------- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 299 PGDSEVKYDrNGFPYVLYKRVVLTGDHITDSTSGSD--ENGAPQVSIGLDSAGGSVMSDFTRDNqgkqmatlfVEYKDSG 376
Cdd:PRK13024 126 VGGPVVGPD-EGKDTAVLNPVLLSGDDLTDAGAKFDqdQTNRPSVSLKLKSEGAKKWAKVTEKN---------SKKGPPN 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 377 KkdaegRVILMKDEKVINAANI-SARFGSQFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLK 455
Cdd:PRK13024 196 N-----RIAIVLDPKVISAPTVnQPINGGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGII 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 456 ACLAGLFASILFMIIYYRKFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNG 535
Cdd:PRK13024 271 AGIIGFALIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSL-GAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKG 349
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504469677 536 RSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLL 604
Cdd:PRK13024 350 KSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLELL 418
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
110-601 |
1.03e-124 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 388.31 E-value: 1.03e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 110 PKWLEAvggEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNMDGIRNDLRQAKVPYSSIrKGDNYSVEIRFRNADdRSQA 189
Cdd:PRK14726 37 PSWLPH---RQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIRYTGL-TGNGQTVQVRITDPA-QTQA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 190 EKILLRKF--------------QDLVFSNGNNNTMTAVMTDERLREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGAER 255
Cdd:PRK14726 112 AVDALKPLtapvsagglggssiQELTLQEGGEGQLRLQLTDAGIDYRVSSALTQSIEVVRRRVAELGTTEPLIRRQGDDR 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 256 IVVELPGIQDTARAKEILGATATLEFRLVNQSVDPAAAENGRVPGDSEVKY--DRNGFPYVLYKRVVLTGDHITDSTSGS 333
Cdd:PRK14726 192 IVVQVPGLVDPQRLKNLLNQPAKLSFRLVDSSMPAQEALNGRPPATSEVLYslDDPPVPYLVERRAFVSGENLVDAQPVF 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 334 D-ENGAPQVSIGLDSAGGSVMSDFTRDNQGKQMATLFveykdsgkkdaegrvilmkDEKVINAANI-SARFGSQFRITGI 411
Cdd:PRK14726 272 DpQTNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVL-------------------DGQVISAPVIdEAITGGEGRISGN 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 412 TDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYRKFGLIASTALFANLIMIV 491
Cdd:PRK14726 333 FSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLII 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 492 GVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVG 571
Cdd:PRK14726 413 AVLSLL-GATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLG 491
|
490 500 510
....*....|....*....|....*....|
gi 504469677 572 TGSIKGFAITTAIGVATSMFTAIIGTRAIV 601
Cdd:PRK14726 492 SGAVRGFAVTLAVGILTTVFTAFTLTRSLV 521
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
233-601 |
8.29e-62 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 218.72 E-value: 8.29e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 233 IIRNRVNQLGVAEPLVQRQGAERIVVELPGIQDTARAKEILGATATLEFRLVNQSVDPAAAENGRVPGDSEVKYDRNGFP 312
Cdd:PRK13023 75 IMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADSEIVYSFDDPP 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 313 --YVLYKRVVLTGDHITDSTSG-SDENGAPQVSIGLDSAGGSVMSDFTRDNQGKQMAtlfveykdsgkkdaegrviLMKD 389
Cdd:PRK13023 155 vgYLLKKTPILTGHDITDAKASiSADDGQPVITLTLDDNGRRRLADLTAQGNENSFA-------------------IVVD 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 390 EKVINAANISARFG-SQFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFM 468
Cdd:PRK13023 216 NQVVSAPTVSGPLDtSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFM 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 469 IIYYRKFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKG 548
Cdd:PRK13023 296 VLSYGILGVIALVALVVNIIILTAVLSLI-GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYR 374
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 504469677 549 AFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIV 601
Cdd:PRK13023 375 ALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLI 427
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
439-594 |
2.66e-55 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 185.92 E-value: 2.66e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 439 RTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYRKFGLIASTALFAN-LIMIVGVMSLLpGATLTMPGIAGIVLTLAVA 517
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLF-GATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504469677 518 VDANVLINERIKEELR--NGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAI 594
Cdd:TIGR00916 114 VDDTVVIFDRIREELRkyKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
2-103 |
6.47e-49 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 165.38 E-value: 6.47e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 2 LNRYPLWKYLMLIAAILIGLLYALPNLYGEDPAVQITGVRGTAA-NEQTLIQVQKTLEKDNIQSKSIALENGAVLARFNN 80
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGGAKvDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDS 80
|
90 100
....*....|....*....|...
gi 504469677 81 PDIQLRAREALVSALGDQYVVAL 103
Cdd:pfam13721 81 TDDQLKAKDVLQRALGDDYVVAL 103
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
383-598 |
2.87e-43 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 167.34 E-value: 2.87e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 383 RVILMKDEKVINAANISARFGSQFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKACLAGLF 462
Cdd:PRK12911 841 RMAVVLDGYVVSDPVLNVPLKDHASVSGKFSHREVHRLATDLKSGAMSFVPEVLSEEVISPELGKSQRTQGIISVCLGLA 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 463 ASILFMIIYYRKFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQSI 542
Cdd:PRK12911 921 VLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYL-DAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESV 999
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 504469677 543 HEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTR 598
Cdd:PRK12911 1000 EAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTK 1055
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
231-586 |
4.17e-29 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 119.98 E-value: 4.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 231 ITIIRNRVNQLGVAEPLVQRQGAERIVVELPGIqDTARAKEILGATATLEFRLVnqsvdpaaaengrVPGDSEvkydrng 310
Cdd:PRK08343 69 VEILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIEKQGVFEARIQ-------------TPGNNN------- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 311 fpyvlykRVVLTGDHIT--DSTSGSDENGAPQVSIGLDSAGGSvmsDFTRDNQGKQMATLFVEYKdsgkkdaegrVILMK 388
Cdd:PRK08343 128 -------ETVLTGDDIEsvGSPSQDPSGGAWGVPFTLSEDGAE---KFAEVAKGKGATDDPSGHP----------LDMYL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 389 DEKVINAANISARFGS-----------QFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKAC 457
Cdd:PRK08343 188 DGELIYAAPLSPDLASglasgpvvitvGSTGTTEEAKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQFKKGSLIAG 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 458 LAGLFASILFMIIYYRKFGL---IASTAlFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLI-NERIKEELR 533
Cdd:PRK08343 268 LLALLAVALVVFLRYREPRIalpMVITS-LSEVIIILGFAALI-GWQLDLASIAGIIAVIGTGVDDLIIItDEVLHEGKV 345
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 504469677 534 NGRSVQQSiheGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGV 586
Cdd:PRK08343 346 PSRKVFLS---RIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGV 395
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
463-612 |
3.93e-16 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 82.52 E-value: 3.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 463 ASILFMIIYYRKFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL-RNGRSVQQS 541
Cdd:NF037998 457 AIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWF-GLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLyKNKRSIEES 535
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504469677 542 IHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKRINK 612
Cdd:NF037998 536 FKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKK 606
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
433-594 |
1.00e-14 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 72.64 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 433 IQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYR-KFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIV 511
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 512 LTLAVAVDANVLINERIKEELR--NGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATS 589
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLRkkTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVG 171
|
....*
gi 504469677 590 MFTAI 594
Cdd:pfam02355 172 TYSSI 176
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
449-609 |
7.44e-13 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 71.81 E-value: 7.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 449 NIEQGLKACLAGLFASILFMIIYYRKF--GLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINE 526
Cdd:COG1033 603 VIESQIRSLLLALLLIFLLLLLAFRSLrlGLISLIPNLLPILLTFGLMGLL-GIPLNIATAVVASIALGIGVDYTIHFLS 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 527 RIKEELRNGRSVQQSIHEGYKGAFSSIIdanLTTLITAI---ILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNL 603
Cdd:COG1033 682 RYREERRKGGDLEEAIRRALRTTGKAIL---FTSLTLAAgfgVLLFSSFPPLADFGLLLALGLLVALLAALLLLPALLLL 758
|
....*.
gi 504469677 604 LYGGKR 609
Cdd:COG1033 759 LDPRIA 764
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
337-570 |
1.59e-12 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 68.42 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 337 GAPqVSIGLDSAGGSVMSDFTRDNQGKQMATLFVEYKDSGK-KDAEGRVILmkdekvinaanisarfgsQFRITGITDPN 415
Cdd:PRK08578 39 GSP-VKLGIDFTGGTEITIQTNDASPDELESALSGEPGVDVrKGSGNGYII------------------TFGSGDDTDVD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 416 EARQlSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLKA-CLAGLFASILFMIIyYRKFglIASTA----LFANLIMI 490
Cdd:PRK08578 100 KLAD-AVKEFFNVDSISELNYSEKQIGPTFGSQFQEQALKAvGFAFIGMAVVVFLI-FRTP--VPSLAvilsAFSDIIIA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 491 VGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIkeeLRNGRSVQQSihegYKGAFSSIIDANLTTLITAIILYAV 570
Cdd:PRK08578 176 LALMNLF-GIELSLATVAALLMLIGYSVDSDILLTTRV---LKRRGTFDES----IKRAMRTGITMTLTTIAAMAVLYIV 247
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
344-597 |
2.03e-12 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 68.34 E-value: 2.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 344 GLDSAGGsVMSDFTRDNQ--GKQMATLFveykDSGKKdaegrvilmKDEKVINAANiSARFgsQFRITGITDPNEARQLS 421
Cdd:PRK13021 36 GLDFTGG-VVTEVQLDRKitSSELQPLL----NAAYQ---------QEVSVISASE-PGRW--VLRYAPADTAQSNVDIQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 422 LLLraGALIAPIQIVEERTIGPTLGLQNIEQGlkaCLAgLFASILFMIIY--YRKFGLIASTALFA---NLIMIVGVMSL 496
Cdd:PRK13021 99 QAL--APLGTEVQVLNSSIVGPQVGQELAEQG---GLA-LLVAMLCILGYlsYRFEWRLASGALFAlvhDVIFVLAFFAL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 497 LPgATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGR--SVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGS 574
Cdd:PRK13021 173 TQ-MEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPklAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGP 251
|
250 260
....*....|....*....|....
gi 504469677 575 IKGFAITTAIGVATSMFTAI-IGT 597
Cdd:PRK13021 252 LEGFSIAMFIGILTGTFSSIsVGT 275
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
458-612 |
2.31e-12 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 69.89 E-value: 2.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 458 LAGLFASILFMIIYYRKF--GLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANV-LINeRIKEELRN 534
Cdd:COG1033 225 PLALLLILLLLFLFFRSLrgVLLPLLVVLLAVIWTLGLMGLL-GIPLSPLTILVPPLLLAIGIDYGIhLLN-RYREERRK 302
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504469677 535 GRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIvnLLYGGKRINK 612
Cdd:COG1033 303 GLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLLPAL--LSLLPRPKPK 378
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
390-597 |
5.51e-12 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 66.61 E-value: 5.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 390 EKVINAANISA----RFGS--QFRITGITDPNEARQLSLLLRAG--ALIAPIQIVEERTIGPTLGLQNIEQGLKAclagL 461
Cdd:COG0341 64 REALEEAGLGDasvqTFGSdnDVLIRTPPLDGESAEEVEKVRAAlkEAFGDVEIVRVEFVGPTVGKELTRKALLA----L 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 462 FASILFMIIY--YR---KFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIvLTlavavdanVL---INE------R 527
Cdd:COG0341 140 LVALIGILIYiaFRfewRFAVGAVVALLHDVLITLGIFSLF-GLEFDLTFIAAL-LT--------IIgysLNDtvvvfdR 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 528 IKEELRNGRsvqqsihegyKGAFSSIIDA------------NLTTLITAIILYAVGTGSIKGFAITTAIGVatsmftaII 595
Cdd:COG0341 210 IRENLRKYR----------KMTLAEIINLsinqtlsrtintSLTTLLVVLALLFFGGETLRDFALALLIGI-------IV 272
|
..
gi 504469677 596 GT 597
Cdd:COG0341 273 GT 274
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
433-593 |
1.28e-11 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 64.99 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 433 IQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYY-RKFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIV 511
Cdd:TIGR00966 80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFeWRFALGAIVALVHDVIITVGVYSLF-GIEVNLTTVAALL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 512 LTLAVAVDANVLINERIKEELR--NGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFA----ITTAIG 585
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRkyTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSlallVGVIVG 238
|
....*...
gi 504469677 586 VATSMFTA 593
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
458-615 |
5.69e-11 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 65.56 E-value: 5.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 458 LAGLFASILFMIIYYRkfGLIAS-----TALFAnLIMIVGVMSLLpGATLTMPGIAGIVLT---LAVAVDANVLINERIK 529
Cdd:COG2409 176 LITLPVALVVLLLVFR--SLVAAllpllTAGLA-VGVALGLLALL-AAFTDVSSFAPNLLTmlgLGVGIDYALFLVSRYR 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 530 EELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLygGKR 609
Cdd:COG2409 252 EELRAGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVLAALTLLPALLALL--GRR 329
|
....*.
gi 504469677 610 INKLSI 615
Cdd:COG2409 330 VFWPRR 335
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
440-615 |
8.98e-08 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 55.23 E-value: 8.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 440 TIGPTLGLQnIEQGLKACLAGLFA--SILFMIIYYRKF-----GLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVL 512
Cdd:TIGR00921 178 TGSPAINYD-IEREFGKDMGTTMAisGILVVLVLLLDFkrwwrPLLPLVIILFGVAWVLGIMGWL-GIPLYATTLLAVPM 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 513 TLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFT 592
Cdd:TIGR00921 256 LIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLL 335
|
170 180
....*....|....*....|...
gi 504469677 593 AIIGTRAIVNLLYGGKRINKLSI 615
Cdd:TIGR00921 336 TLLVLPALLQSIDIGREKVKKEI 358
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
406-612 |
3.54e-07 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 53.31 E-value: 3.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 406 FRITGITDPNEARQLSLLLRAGALIA---PIQIVEERTIGPTLGLQNIEQGLKACLAGLFASILFMIIYYR-KFGLIAST 481
Cdd:PRK13024 529 VRTYGILSDDEEADTEIVAKLKNALKndkGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEwTFSLGAIL 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 482 ALFANLIMIVGVMSLLpGATLTMPGIAGIvLTLaVAVDAN--VLINERIKEELRNGRS------VQQSIHEgykgAFSSI 553
Cdd:PRK13024 609 ALLHDVLIVIGFFSLF-RLEVDLTFIAAI-LTI-IGYSINdtVVVFDRIRENLRLYKKkdlreiVNKSINQ----TLSRT 681
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 554 IDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAI-IGTRAIVNLlyGGKRINK 612
Cdd:PRK13024 682 INTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIfIAAPLWLDL--EKRRLKK 739
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
455-603 |
6.54e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 52.53 E-value: 6.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 455 KACLAGLFASILFMIIYYRK-----FGLIA--STALFANLIMivgvmsLLPGATLTMPGIAGIVLTLAVAVDANVLINER 527
Cdd:TIGR00921 571 RMTIAGAILVLMILLAVFRNpikavFPLIAigSGILWAIGLM------GLRGIPSFLAMATTISIILGLGMDYSIHLAER 644
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504469677 528 IKEElRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNL 603
Cdd:TIGR00921 645 YFEE-RKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALLVL 719
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
468-604 |
1.22e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 50.75 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 468 MIIYYRKF---GLIASTALFA-----NLIMIVGVMSLLPGATLTmPGIAGIVLtLAVAVDANVLINERIKEELRNGRSVQ 539
Cdd:pfam03176 159 LLIVYRSVvaaLLPLLTVGLSlgaaqGLVAILAHILGIGLSTFA-LNLLVVLL-IAVGTDYALFLVSRYREELRAGEDRE 236
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504469677 540 QSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLL 604
Cdd:pfam03176 237 EAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPALLALL 301
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
1-124 |
2.31e-06 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 46.92 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 1 MLNRYPLWKYLMLiaAILIGLLYALPNLYGEDPAVQITGVRGTAaneqTL---IQVQKTLEKDNIQSKSIALENGAVLAR 77
Cdd:PRK10629 6 MSLRQLAWLGAVL--LLLAALLLAWSALRQQESTLAIRAVHQGA----SLpdgFYVYQHLDANGIHIKSITPENDSLLIR 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 504469677 78 FNNPDIQLRAREALVSALGDQYVVAL-NLAPATPKWLEAVGGEPMKLG 124
Cdd:PRK10629 80 FDSPEQSAAAKEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
458-595 |
4.55e-05 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 46.38 E-value: 4.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 458 LAGLFASILFMIIYYRKF--GLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVDANVLINErikeelrng 535
Cdd:COG4258 646 LLALLLILLLLLLRLRSLrrALRVLLPPLLAVLLTLAILGLL-GIPLNLFHLIALLLVLGIGIDYALFFTE--------- 715
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 536 rsvQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAII 595
Cdd:COG4258 716 ---GLLDKGELARTLLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGILLALLLAPL 772
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
441-594 |
3.93e-04 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 43.45 E-value: 3.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 441 IGPTLGLQNIEQGLKACLAGLFAsiLFMIIYYRKFGLIASTALFANL--IMIVGVMSLLPGATLTMPGIAGIVLTLAVAV 518
Cdd:PRK13023 568 VGPTVSEQLSRAGVLAVILSLIG--IFIYVWFRFRWQLALGAVLSTLhdVVILSGMFIVFRMEFNLWSVAAILTIIGYSL 645
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504469677 519 DANVLINERIKEELRNGRS--VQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAI 594
Cdd:PRK13023 646 NDTVVIYDRVRENLRRYKSapLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSI 723
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
120-140 |
2.44e-03 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 35.73 E-value: 2.44e-03
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
441-594 |
2.73e-03 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 40.86 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 441 IGPTLGLQNIEQGLKACLAGLFASILFMIIYY-RKFGLIASTALFANLIMIVGVMSLLpGATLTMPGIAGIVLTLAVAVD 519
Cdd:PRK14726 662 VGPAVSGELTMAATLGVLAALAAILIYIWIRFeWQFAVGAIIATLHDVILTLGLFVLT-GIEFNLTSIAAILTIVGYSLN 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 520 ANVLINERIKEELRNGRS------VQQSIHEgykgAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTA 593
Cdd:PRK14726 741 DTVVVYDRVRENLRRYKKmplpilIDASINQ----TLSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSS 816
|
.
gi 504469677 594 I 594
Cdd:PRK14726 817 I 817
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
454-606 |
2.76e-03 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 40.72 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504469677 454 LKACLAGLFASILFMIIYYRKFGLiasTALFANLIMIVGVMSLLPGATltmpgiagIVLTLAVAVDANVLINERIKEELR 533
Cdd:TIGR00833 765 LRAPVAPIVLIGSVALSYLWALGL---SVLAFQHILGAELHWSVLAGV--------FVLLVALGVDYNMLLVSRIKEESP 833
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504469677 534 NGrsVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYG 606
Cdd:TIGR00833 834 AG--NRTGIIRALGSTGGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLG 904
|
|
| |
