|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
293-492 |
5.68e-45 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 158.25 E-value: 5.68e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 293 LSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWN 372
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 373 NKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRY 452
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 504399196 453 EEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAA 492
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
259-492 |
5.90e-43 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 152.85 E-value: 5.90e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 259 ISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWY 338
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 339 NKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRL 418
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504399196 419 SEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAA 492
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
327-498 |
1.35e-42 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 151.70 E-value: 1.35e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 327 ISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWN 406
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 407 NKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRG 486
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170
....*....|..
gi 504399196 487 EEAEAAFSRGRE 498
Cdd:COG0457 161 EEALELLEKLEA 172
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
264-495 |
1.22e-33 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 128.31 E-value: 1.22e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 264 ASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIA 343
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 344 LDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVE 423
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504399196 424 AYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSR 495
Cdd:COG2956 166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRK 237
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
103-241 |
5.99e-33 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 122.04 E-value: 5.99e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 103 VRREAARALGEIGDPQAIEPLAHLaLKDPDGGVRGKAVEALAEAGDPAAVTPLIGAIKDENSSVRMRAARALGEIGDPQA 182
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAA-LADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 504399196 183 IEPLAyLALKDPDGGVRGEAVEALAEAGGPAAVTPLIAALRDADPGVSEKASEALVIIG 241
Cdd:COG1413 80 VPALI-AALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
245-455 |
1.71e-32 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 131.27 E-value: 1.71e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 245 AVAPLIEARRYDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYD 324
Cdd:COG3914 23 AAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 325 VAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQA 404
Cdd:COG3914 103 RALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 504399196 405 WNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEA 455
Cdd:COG3914 183 LNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
361-499 |
2.03e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 124.35 E-value: 2.03e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 361 ISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWM 440
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 504399196 441 NKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRGREL 499
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
303-499 |
3.03e-32 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 130.50 E-value: 3.03e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 303 WNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLD---------PEDANAWNN 373
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGeaaaaaaalLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 374 KGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYE 453
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 504399196 454 EAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRGREL 499
Cdd:COG3914 164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
303-491 |
3.58e-32 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 130.50 E-value: 3.58e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 303 WNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQG 382
Cdd:COG3914 47 LLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 383 QLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEV 462
Cdd:COG3914 127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
170 180
....*....|....*....|....*....
gi 504399196 463 IRQRPEDGDAWVGRGAALQALGRGEEAEA 491
Cdd:COG3914 207 LELDPDNADAHSNLLFALRQACDWEVYDR 235
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
58-178 |
4.10e-32 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 119.73 E-value: 4.10e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 58 VDPLISALEDEASEVRCEAAAALGEVRDARAVGPLIAALKDPDPGVRREAARALGEIGDPQAIEPLAHlALKDPDGGVRG 137
Cdd:COG1413 18 VPALIAALADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAVPALIA-ALKDEDPEVRR 96
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 504399196 138 KAVEALAEAGDPAAVTPLIGAIKDENSSVRMRAARALGEIG 178
Cdd:COG1413 97 AAAEALGRLGDPAAVPALLEALKDPDWEVRRAAARALGRLG 137
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
255-469 |
6.21e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 122.81 E-value: 6.21e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 255 YDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYS 334
Cdd:COG0457 31 YEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 335 HAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYD 414
Cdd:COG0457 111 EALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 504399196 415 QGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPED 469
Cdd:COG0457 191 AAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
255-495 |
1.16e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 122.92 E-value: 1.16e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 255 YDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYS 334
Cdd:COG2956 31 LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 335 HAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYD 414
Cdd:COG2956 111 EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLE 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 415 QGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDgDAWVGRGAALQALGRGEEAEAAFS 494
Cdd:COG2956 191 QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALLE 269
|
.
gi 504399196 495 R 495
Cdd:COG2956 270 R 270
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
135-252 |
1.62e-26 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 104.33 E-value: 1.62e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 135 VRGKAVEALAEAGDPAAVTPLIGAIKDENSSVRMRAARALGEIGDPQAIEPLAyLALKDPDGGVRGEAVEALAEAGGPAA 214
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAALADEDPDVRAAAARALGRLGDPRAVPALL-EALKDPDPEVRAAAAEALGRIGDPEA 79
|
90 100 110
....*....|....*....|....*....|....*...
gi 504399196 215 VTPLIAALRDADPGVSEKASEALVIIGDPRAVAPLIEA 252
Cdd:COG1413 80 VPALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEA 117
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
253-466 |
2.90e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 104.81 E-value: 2.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 253 RRYDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQ 332
Cdd:COG2956 63 RIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 333 YSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVAL 412
Cdd:COG2956 143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 504399196 413 YDQGRLSEAVEAYDMALSLDPAyHHAWMNKGLALRSLGRYEEAVLIYDEVIRQR 466
Cdd:COG2956 223 EKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
305-493 |
3.55e-24 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 100.37 E-value: 3.55e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 305 NKGVALRDLGRLSEAVEAYDVAISLdPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQL 384
Cdd:COG4785 45 ALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDY 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 385 SEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLgRYEEAVLIYDEVIr 464
Cdd:COG4785 124 DAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLEDW- 201
|
170 180
....*....|....*....|....*....
gi 504399196 465 qrpedgdawvgrGAALQALGRGEEAEAAF 493
Cdd:COG4785 202 ------------ATAYLLQGDTEEARELF 218
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
336-469 |
9.32e-23 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 94.10 E-value: 9.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 336 AWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQ 415
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 504399196 416 GRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPED 469
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
366-499 |
9.89e-23 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 93.72 E-value: 9.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 366 EDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLA 445
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 504399196 446 LRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRGREL 499
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
302-435 |
5.76e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 91.79 E-value: 5.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 302 VWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQ 381
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 504399196 382 GQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAY 435
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
273-401 |
1.40e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.94 E-value: 1.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 273 GLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEK 352
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 504399196 353 AIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGY 401
Cdd:COG4783 91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
352-474 |
1.84e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 86.98 E-value: 1.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 352 KAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSL 431
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 504399196 432 DPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWV 474
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
244-464 |
1.93e-20 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 89.97 E-value: 1.93e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 244 RAVAPLIEARRYDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLdPQDPYVWNNKGVALRDLGRLSEAVEAY 323
Cdd:COG4785 18 AASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 324 DVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQ 403
Cdd:COG4785 97 DQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPE 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504399196 404 AWNNKGvalydqgrLSEAVEAYDMALSLdpaYHHAWMNkglALRSLGRYEEAVLIYDEVIR 464
Cdd:COG4785 177 RALWLY--------LAERKLDPEKALAL---LLEDWAT---AYLLQGDTEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
318-434 |
2.28e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 86.98 E-value: 2.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 318 EAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVL 397
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 504399196 398 DPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPA 434
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
284-404 |
1.45e-19 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 84.67 E-value: 1.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 284 EAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISL 363
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 504399196 364 DPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQA 404
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
120-207 |
4.00e-19 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 82.00 E-value: 4.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 120 IEPLAHLALKDPDGGVRGKAVEALAEAGDPAAVTPLIGAIKDENSSVRMRAARALGEIGDPQAIEPLAYLALKDPDGGVR 199
Cdd:pfam13646 1 LPALLQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLELLRDDDDDVVR 80
|
....*...
gi 504399196 200 GEAVEALA 207
Cdd:pfam13646 81 AAAAEALA 88
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
58-144 |
4.37e-19 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 82.00 E-value: 4.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 58 VDPLISALEDEAS-EVRCEAAAALGEVRDARAVGPLIAALKDPDPGVRREAARALGEIGDPQAIEPLAHLALKDPDGGVR 136
Cdd:pfam13646 1 LPALLQALLRDPDpEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLELLRDDDDDVVR 80
|
....*...
gi 504399196 137 GKAVEALA 144
Cdd:pfam13646 81 AAAAEALA 88
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
234-367 |
5.82e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 83.32 E-value: 5.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 234 SEALVIIGDPRAVAPLiearrYDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDL 313
Cdd:COG4783 11 AQALLLAGDYDEAEAL-----LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 504399196 314 GRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPED 367
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
199-430 |
6.89e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 85.35 E-value: 6.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 199 RGEAVEALAEAGGPAAVTPLIAALRDADPGVSEKASEALVIIGDPRAVAPLIEARRYDEAISIDPASPLAWGGK---GLS 275
Cdd:COG4785 3 ALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYyerGVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 276 LYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIE 355
Cdd:COG4785 83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504399196 356 AYDMAISLDPEDANAWNNKGvalfgqgqLSEAIKAYDVAIVLdpgYAQAWnnkGVALYDQGRLSEAVEAYDMALS 430
Cdd:COG4785 163 DLEKALELDPNDPERALWLY--------LAERKLDPEKALAL---LLEDW---ATAYLLQGDTEEARELFKLALA 223
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
337-499 |
5.00e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.01 E-value: 5.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 337 WYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQG 416
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 417 RLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRG 496
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
...
gi 504399196 497 REL 499
Cdd:COG2956 171 LKL 173
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
166-258 |
8.50e-18 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 79.67 E-value: 8.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 166 VRMRAARALGEIGDPQAIEPLAYLaLKDPDGGVRGEAVEALAEAGGPAAVTPLIAALRDADPGVSEKASEALVIIGDPRA 245
Cdd:COG1413 1 VRRAAARALGRLGDPAAVPALIAA-LADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEA 79
|
90
....*....|...
gi 504399196 246 VAPLIEARRYDEA 258
Cdd:COG1413 80 VPALIAALKDEDP 92
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
252-370 |
1.55e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 78.89 E-value: 1.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 252 ARRYDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDP 331
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 504399196 332 QYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANA 370
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
64-238 |
1.56e-17 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 86.06 E-value: 1.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 64 ALEDEASEVRCEAAAALGEVRDARAVgplIAALKDPDPGVRREAARALGEIGDPQAIEPLAHLAL-KDPDGGVRGKAVEA 142
Cdd:PRK13800 722 ALGDPDHRVRIEAVRALVSVDDVESV---AGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALtGDPDPLVRAAALAA 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 143 LAEAG-DPAAVTPLIGAIKDENSSVRMRAARALGEIGDPQAIePLAYLALKDPDGGVRGEAVEALAE-AGGPAAVTPLIA 220
Cdd:PRK13800 799 LAELGcPPDDVAAATAALRASAWQVRQGAARALAGAAADVAV-PALVEALTDPHLDVRKAAVLALTRwPGDPAARDALTT 877
|
170
....*....|....*...
gi 504399196 221 ALRDADPGVSEKASEALV 238
Cdd:PRK13800 878 ALTDSDADVRAYARRALA 895
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
314-475 |
1.96e-17 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 81.61 E-value: 1.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 314 GRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDV 393
Cdd:TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 394 AIvLDPGYAQ---AWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAwmNKGLALRSL--GRYEEAVLIYDEVIRQRPE 468
Cdd:TIGR02521 125 AI-EDPLYPQparSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES--LLELAELYYlrGQYKDARAYLERYQQTYNQ 201
|
....*...
gi 504399196 469 DGDA-WVG 475
Cdd:TIGR02521 202 TAESlWLG 209
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
60-254 |
2.72e-17 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 85.29 E-value: 2.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 60 PLISALEDEASEVRCEAAAALGEVRDARAVGPLIAA-LKDPDPGVRREA---ARALgEIGDPQaiepLAHLALKDPDGGV 135
Cdd:PRK13800 656 ALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDhLGSPDPVVRAAAldvLRAL-RAGDAA----LFAAALGDPDHRV 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 136 RGKAVEALAEAGDPAAVTpliGAIKDENSSVRMRAARALGEIGDPQAIEPLAYLAL-KDPDGGVRGEAVEALAEAG-GPA 213
Cdd:PRK13800 731 RIEAVRALVSVDDVESVA---GAATDENREVRIAVAKGLATLGAGGAPAGDAVRALtGDPDPLVRAAALAALAELGcPPD 807
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 504399196 214 AVTPLIAALRDADPGVSEKASEALVIIGDPRAVAPLIEARR 254
Cdd:PRK13800 808 DVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALT 848
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
340-495 |
2.78e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 80.73 E-value: 2.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 340 KGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAI---------VLDPGYAQAWNNKGV 410
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAAlaaeridraLALPDLAQLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 411 ALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAE 490
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161
|
....*
gi 504399196 491 AAFSR 495
Cdd:COG4785 162 ADLEK 166
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
343-436 |
7.11e-17 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 75.59 E-value: 7.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 343 ALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIkAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAV 422
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....
gi 504399196 423 EAYDMALSLDPAYH 436
Cdd:COG3063 80 AYLERALELDPSAL 93
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
58-209 |
1.64e-15 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 79.51 E-value: 1.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 58 VDPLISALEDEASEVRCEAAAALGEVR--DARAVGPLIAALKDPDPGVRREAARALGEIGDPQAIEPLAHLALKDPDGGV 135
Cdd:PRK13800 744 VESVAGAATDENREVRIAVAKGLATLGagGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQV 823
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504399196 136 RGKAVEALAEAGDPAAVTPLIGAIKDENSSVRMRAARALGEI-GDPQAIEPLAyLALKDPDGGVRGEAVEALAEA 209
Cdd:PRK13800 824 RQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWpGDPAARDALT-TALTDSDADVRAYARRALAHA 897
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
91-175 |
1.78e-15 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 71.60 E-value: 1.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 91 PLIAAL-KDPDPGVRREAARALGEIGDPQAIEPLAHLaLKDPDGGVRGKAVEALAEAGDPAAVTPLIGAIKDENSS-VRM 168
Cdd:pfam13646 3 ALLQALlRDPDPEVRAAAIRALGRIGDPEAVPALLEL-LKDEDPAVRRAAAEALGKIGDPEALPALLELLRDDDDDvVRA 81
|
....*..
gi 504399196 169 RAARALG 175
Cdd:pfam13646 82 AAAEALA 88
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
377-468 |
5.40e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 70.58 E-value: 5.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 377 ALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAvEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAV 456
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 504399196 457 LIYDEVIRQRPE 468
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
386-495 |
8.22e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.19 E-value: 8.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 386 EAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQ 465
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|
gi 504399196 466 RPEDGDAWVGRGAALQALGRGEEAEAAFSR 495
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQK 110
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
281-433 |
1.45e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 71.14 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 281 RLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMA 360
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504399196 361 ISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDP 433
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
309-399 |
1.52e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 69.04 E-value: 1.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 309 ALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIeAYDMAISLDPEDANAWNNKGVALFGQGQLSEAI 388
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 504399196 389 KAYDVAIVLDP 399
Cdd:COG3063 80 AYLERALELDP 90
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
280-491 |
4.11e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.12 E-value: 4.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 280 GRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDM 359
Cdd:TIGR02917 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 360 AISLDPED-ANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHA 438
Cdd:TIGR02917 116 KTLLDDEGaAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 504399196 439 WMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEA 491
Cdd:TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEK 248
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
280-366 |
5.08e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 67.50 E-value: 5.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 280 GRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAvEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDM 359
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84
|
....*..
gi 504399196 360 AISLDPE 366
Cdd:COG3063 85 ALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
315-467 |
9.54e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 68.83 E-value: 9.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 315 RLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVA 394
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504399196 395 IVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRP 467
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
247-399 |
2.25e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 67.68 E-value: 2.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 247 APLIEARRYDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVA 326
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504399196 327 ISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDP 399
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
272-426 |
3.75e-13 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 68.90 E-value: 3.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 272 KGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDE 351
Cdd:TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504399196 352 KAIEAYDMAIS--LDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYD 426
Cdd:TIGR02521 117 QAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
280-469 |
4.77e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.65 E-value: 4.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 280 GRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDM 359
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 360 AISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAW 439
Cdd:TIGR02917 219 AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298
|
170 180 190
....*....|....*....|....*....|
gi 504399196 440 MNKGLALRSLGRYEEAVLIYDEVIRQRPED 469
Cdd:TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNS 328
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
213-365 |
6.75e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.52 E-value: 6.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 213 AAVTPLIAALRDADPGVSEKASEALVIIGDPRAVAPLIEARRYDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTA 292
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504399196 293 LSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDP 365
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
368-501 |
8.86e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.60 E-value: 8.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 368 ANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALR 447
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 504399196 448 SLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRGRELGG 501
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
24-115 |
2.76e-12 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 63.88 E-value: 2.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 24 ATVVDDLILDLKYGQADVRAGAARALGEAGGAGAVDPLISALEDEASEVRCEAAAALGEVRDARAVGPLIAALKDPDPGV 103
Cdd:COG1413 46 PRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAVPALIAALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWEV 125
|
90
....*....|..
gi 504399196 104 RREAARALGEIG 115
Cdd:COG1413 126 RRAAARALGRLG 137
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
283-499 |
2.99e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 68.86 E-value: 2.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 283 SEAVVAYDTALS---LDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDM 359
Cdd:TIGR00990 311 EEAARAFEKALDlgkLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 360 AISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGY----------------------------------AQAW 405
Cdd:TIGR00990 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFifshiqlgvtqykegsiassmatfrrckknfpeaPDVY 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 406 NNKGVALYDQGRLSEAVEAYDMALSL----DPAYHHA--WMNKGLAL-RSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGA 478
Cdd:TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELeketKPMYMNVlpLINKALALfQWKQDFIEAENLCEKALIIDPECDIAVATMAQ 550
|
250 260
....*....|....*....|.
gi 504399196 479 ALQALGRGEEAEAAFSRGREL 499
Cdd:TIGR00990 551 LLLQQGDVDEALKLFERAAEL 571
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
256-489 |
3.63e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.96 E-value: 3.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 256 DEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSH 335
Cdd:TIGR02917 319 NQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 336 AWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAwnnkGVAL----FGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVA 411
Cdd:TIGR02917 399 ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA----DLLLilsyLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504399196 412 LYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEA 489
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
411-499 |
1.67e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.57 E-value: 1.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 411 ALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAvLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAE 490
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*....
gi 504399196 491 AAFSRGREL 499
Cdd:COG3063 80 AYLERALEL 88
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
360-499 |
2.18e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.90 E-value: 2.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 360 AISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAW 439
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 440 MNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRGREL 499
Cdd:COG5010 92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
155-237 |
2.49e-11 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 59.66 E-value: 2.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 155 LIGAIKDENSSVRMRAARALGEIGDPQAIEPLAYLaLKDPDGGVRGEAVEALAEAGGPAAVTPLIAALR-DADPGVSEKA 233
Cdd:pfam13646 5 LQALLRDPDPEVRAAAIRALGRIGDPEAVPALLEL-LKDEDPAVRRAAAEALGKIGDPEALPALLELLRdDDDDVVRAAA 83
|
....
gi 504399196 234 SEAL 237
Cdd:pfam13646 84 AEAL 87
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
183-258 |
3.00e-11 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 59.66 E-value: 3.00e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504399196 183 IEPLAYLALKDPDGGVRGEAVEALAEAGGPAAVTPLIAALRDADPGVSEKASEALVIIGDPRAVAPLIEARRYDEA 258
Cdd:pfam13646 1 LPALLQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLKDEDPAVRRAAAEALGKIGDPEALPALLELLRDDDD 76
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
251-398 |
5.34e-11 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 62.01 E-value: 5.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 251 EARRY-DEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISL 329
Cdd:NF040959 55 KAVRYlEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEE 134
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504399196 330 DPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLD 398
Cdd:NF040959 135 KPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMELE 203
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
257-461 |
7.03e-11 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 64.62 E-value: 7.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 257 EAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHA 336
Cdd:TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 337 WYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVL----DPGYAQAWN--NKGV 410
Cdd:TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELeketKPMYMNVLPliNKAL 515
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 504399196 411 ALYD-QGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDE 461
Cdd:TIGR00990 516 ALFQwKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
179-499 |
1.02e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 64.33 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 179 DPQAIEP---LAYLAL--KDPDGGvRGEAVEALAEAGGPAAVTPLIAALRdadpGVSEKASEALVIIGDPRAVAP----- 248
Cdd:TIGR02917 155 DPRSLYAklgLAQLALaeNRFDEA-RALIDEVLTADPGNVDALLLKGDLL----LSLGNIELALAAYRKAIALRPnniav 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 249 -------LIEARRYDEA-------ISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLG 314
Cdd:TIGR02917 230 llalatiLIEAGEFEEAekhadalLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 315 RLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVA 394
Cdd:TIGR02917 310 NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 395 IVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWV 474
Cdd:TIGR02917 390 TELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHN 469
|
330 340
....*....|....*....|....*
gi 504399196 475 GRGAALQALGRGEEAEAAFSRGREL 499
Cdd:TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSI 494
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
326-499 |
3.65e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 3.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 326 AISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIK-AYDVAIVLDPGYAQA 404
Cdd:TIGR02917 48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDeLPGKTLLDDEGAAEL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 405 WNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALG 484
Cdd:TIGR02917 128 LALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207
|
170
....*....|....*
gi 504399196 485 RGEEAEAAFSRGREL 499
Cdd:TIGR02917 208 NIELALAAYRKAIAL 222
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
67-208 |
4.12e-09 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 57.44 E-value: 4.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 67 DEASEVRCEAAAALGEVRDARAVGPLIAALKDPDPGVRREAARALG--EIGDPQAIEPLAHLaLKDPDGGVRGKAVEALA 144
Cdd:PRK09687 139 DKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNsnKYDNPDIREAFVAM-LQDKNEEIRIEAIIGLA 217
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504399196 145 EAGDPAAVTPLIGAIkdENSSVRMRAARALGEIGDPQAIEPLAYLALKDPDGGVRGEAVEALAE 208
Cdd:PRK09687 218 LRKDKRVLSVLIKEL--KKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
420-499 |
4.88e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 4.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 420 EAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRGREL 499
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
368-499 |
9.32e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 55.81 E-value: 9.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 368 ANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALR 447
Cdd:TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 504399196 448 SLGRYEEAVLIYDEVIRQR--PEDGDAWVGRGAALQALGRGEEAEAAFSRGREL 499
Cdd:TIGR02521 111 QQGKYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
80-247 |
3.21e-08 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 56.40 E-value: 3.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 80 LGEVRdARAVGPLIAALKDPDPGVRREAAraLGEIGDPQAIEPLAHLAlkDPDGGVRGKAVEALAEAGDPAAVTPLIGAI 159
Cdd:PRK13800 587 GGRAP-AEGVSRAAAPATAPEPPSPRILA--VLALDAPSVAELAPYLA--DPDPGVRRTAVAVLTETTPPGFGPALVAAL 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 160 KDENSSVRMRAARALGEIGDPQAIEPLAYLALKDPDGGVRGEAVEALA--EAGGPAAVTpliAALRDADPGVSEKASEAL 237
Cdd:PRK13800 662 GDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRalRAGDAALFA---AALGDPDHRVRIEAVRAL 738
|
170
....*....|
gi 504399196 238 VIIGDPRAVA 247
Cdd:PRK13800 739 VSVDDVESVA 748
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
376-468 |
5.04e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.15 E-value: 5.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 376 VALFGQGQLSEAIKAYDVAIVLDPG---YAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPA---YHHAWMNKGLALRSL 449
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90
....*....|....*....
gi 504399196 450 GRYEEAVLIYDEVIRQRPE 468
Cdd:COG1729 81 GDYDKARATLEELIKKYPD 99
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
274-370 |
8.03e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.76 E-value: 8.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 274 LSLYDGGRLSEAVVAYDTALSLDPQDPYVWN---NKGVALRDLGRLSEAVEAYDVAISLDPQ---YSHAWYNKGIALDEM 347
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90 100
....*....|....*....|...
gi 504399196 348 GEDEKAIEAYDMAISLDPEDANA 370
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAA 103
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
285-442 |
1.87e-07 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 53.25 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 285 AVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLD 364
Cdd:PLN03088 21 AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504399196 365 PEDAnawnnkgvalfgqgQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNK 442
Cdd:PLN03088 101 PGDS--------------RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPKYRHEFYQK 164
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
402-433 |
1.98e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 47.03 E-value: 1.98e-07
10 20 30
....*....|....*....|....*....|..
gi 504399196 402 AQAWNNKGVALYDQGRLSEAVEAYDMALSLDP 433
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
410-495 |
2.22e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.22 E-value: 2.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 410 VALYDQGRLSEAVEAYDMALSLDPAYHH---AWMNKGLALRSLGRYEEAVLIYDEVIRQRPED---GDAWVGRGAALQAL 483
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80
|
90
....*....|..
gi 504399196 484 GRGEEAEAAFSR 495
Cdd:COG1729 81 GDYDKARATLEE 92
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
391-470 |
3.18e-07 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 51.81 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 391 YDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDG 470
Cdd:PRK11189 87 FSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
252-394 |
3.77e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 52.68 E-value: 3.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 252 ARRYDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISL-- 329
Cdd:TIGR00990 419 GKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELek 498
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 330 --DPQYSHA--WYNKGIALDEMGED-EKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVA 394
Cdd:TIGR00990 499 etKPMYMNVlpLINKALALFQWKQDfIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
336-367 |
5.98e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 45.87 E-value: 5.98e-07
10 20 30
....*....|....*....|....*....|..
gi 504399196 336 AWYNKGIALDEMGEDEKAIEAYDMAISLDPED 367
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
225-491 |
6.77e-07 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 52.01 E-value: 6.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 225 ADPGVSEKAsEALVIIGDPRAVAPLIEARRydeAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYV-- 302
Cdd:PRK11447 266 ADPAFRARA-QGLAAVDSGQGGKAIPELQQ---AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdk 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 303 WNN------------KGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANA 370
Cdd:PRK11447 342 WESllkvnrywlliqQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 371 WnnKGVALFGQGQLSEAIKAY---------------DVAIVLDPGYAQAwnnkgVALYDQGRLSEAVEAYDMALSLDPay 435
Cdd:PRK11447 422 V--RGLANLYRQQSPEKALAFiaslsasqrrsiddiERSLQNDRLAQQA-----EALENQGKWAQAAELQRQRLALDP-- 492
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 504399196 436 HHAWMNKGLA--LRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEA 491
Cdd:PRK11447 493 GSVWLTYRLAqdLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALA 550
|
|
| PRK09687 |
PRK09687 |
putative lyase; Provisional |
95-251 |
8.65e-07 |
|
putative lyase; Provisional
Pssm-ID: 170047 [Multi-domain] Cd Length: 280 Bit Score: 50.51 E-value: 8.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 95 ALKDPDPGVRREAARALGEI---GDPQAIEPLAHLALK--DPDGGVRGKAVEALAEAGDPAAVTPLIGAIKDENSSVRMR 169
Cdd:PRK09687 99 ALEDKSACVRASAINATGHRckkNPLYSPKIVEQSQITafDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNW 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 170 AARALGEIG-DPQAIEPLAYLALKDPDGGVRGEAVEALAEAGGPAAVTPLIAALrdADPGVSEKASEALVIIGDPRAVAP 248
Cdd:PRK09687 179 AAFALNSNKyDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKEL--KKGTVGDLIIEAAGELGDKTLLPV 256
|
...
gi 504399196 249 LIE 251
Cdd:PRK09687 257 LDT 259
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
375-416 |
1.23e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 45.16 E-value: 1.23e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 504399196 375 GVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQG 416
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
357-433 |
1.33e-06 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 49.89 E-value: 1.33e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504399196 357 YDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDP 433
Cdd:PRK11189 87 FSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
289-367 |
1.97e-06 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 49.50 E-value: 1.97e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504399196 289 YDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPED 367
Cdd:PRK11189 87 FSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
301-405 |
2.44e-06 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 47.74 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 301 YVWNNKGVALRDLGRLSEAVEAYDVAISL--DP-QYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVA 377
Cdd:PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLeeDPnDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 504399196 378 LFGQGQLSEAI-----------KAYDV---AIVLDP-GY--AQAW 405
Cdd:PRK02603 116 YHKRGEKAEEAgdqdeaealfdKAAEYwkqAIRLAPnNYieAQNW 160
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
402-433 |
2.88e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.97 E-value: 2.88e-06
10 20 30
....*....|....*....|....*....|..
gi 504399196 402 AQAWNNKGVALYDQGRLSEAVEAYDMALSLDP 433
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
342-433 |
3.34e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.14 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 342 IALDEMGEDEKAIEAYDMAISLDPED---ANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPG---YAQAWNNKGVALYDQ 415
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90
....*....|....*...
gi 504399196 416 GRLSEAVEAYDMALSLDP 433
Cdd:COG1729 81 GDYDKARATLEELIKKYP 98
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
341-382 |
3.49e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 43.61 E-value: 3.49e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 504399196 341 GIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQG 382
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
179-493 |
3.83e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 3.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 179 DPQAIEPL--AYLALKDPDggvrgEAVEALAEAGgpaAVTPLIAALR-----------DADPGVS--EKASEALVIIGDP 243
Cdd:TIGR02917 362 DPAALSLLgeAYLALGDFE-----KAAEYLAKAT---ELDPENAAARtqlgisklsqgDPSEAIAdlETAAQLDPELGRA 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 244 RAVAPL--IEARRYDEAISI-------DPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLG 314
Cdd:TIGR02917 434 DLLLILsyLRSGQFDKALAAakklekkQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 315 RLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVA 394
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 395 IVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDP---------AYHHAWM-NKGLALRSL--------------- 449
Cdd:TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPdsalallllADAYAVMkNYAKAITSLkralelkpdnteaqi 673
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 504399196 450 ---------GRYEEAVLIYDEVIRQRPED--GDAWVGRGAALQalGRGEEAEAAF 493
Cdd:TIGR02917 674 glaqlllaaKRTESAKKIAKSLQKQHPKAalGFELEGDLYLRQ--KDYPAAIQAY 726
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
273-314 |
3.89e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 43.61 E-value: 3.89e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 504399196 273 GLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLG 314
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
276-368 |
4.18e-06 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 46.13 E-value: 4.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 276 LYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIE 355
Cdd:TIGR02552 27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK 106
|
90
....*....|...
gi 504399196 356 AYDMAISLDPEDA 368
Cdd:TIGR02552 107 ALDLAIEICGENP 119
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
336-367 |
8.71e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.43 E-value: 8.71e-06
10 20 30
....*....|....*....|....*....|..
gi 504399196 336 AWYNKGIALDEMGEDEKAIEAYDMAISLDPED 367
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
397-493 |
9.20e-06 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 45.36 E-value: 9.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 397 LDPGYAQAWNnkgvaLYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGR 476
Cdd:TIGR02552 17 LEQIYALAYN-----LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91
|
90
....*....|....*..
gi 504399196 477 GAALQALGRGEEAEAAF 493
Cdd:TIGR02552 92 AECLLALGEPESALKAL 108
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
368-401 |
1.19e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 42.02 E-value: 1.19e-05
10 20 30
....*....|....*....|....*....|....
gi 504399196 368 ANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGY 401
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
179-489 |
1.67e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.77 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 179 DPQAIEPL-----AYLALKDPDggvrgEAVEALAEAGGPAAVTP-LIAALRDA--DPGVSEKASEAL--VIIGDPRAVAP 248
Cdd:TIGR02917 563 NPQEIEPAlalaqYYLGKGQLK-----KALAILNEAADAAPDSPeAWLMLGRAqlAAGDLNKAVSSFkkLLALQPDSALA 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 249 LIE-------ARRYDEAIS-------IDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKG-VALRDl 313
Cdd:TIGR02917 638 LLLladayavMKNYAKAITslkraleLKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGdLYLRQ- 716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 314 GRLSEAVEAYDVAISLDPQYSHAwYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDV 393
Cdd:TIGR02917 717 KDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQT 795
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 394 AIVLDPGYAQAWNNKGVaLYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAW 473
Cdd:TIGR02917 796 VVKKAPDNAVVLNNLAW-LYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874
|
330
....*....|....*.
gi 504399196 474 VGRGAALQALGRGEEA 489
Cdd:TIGR02917 875 YHLALALLATGRKAEA 890
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
377-493 |
2.07e-05 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 46.03 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 377 ALFGQGQLSEAIKAYDVAivldpGYAQAWNNKGVALYDQGRLSEAVEAYDMALSlDPAYHHAWMNKGLA--LRSLGRYEE 454
Cdd:COG4700 69 ALDPGRELRELEKALEFA-----DTVQNRVRLADALLELGRYDEAIELYEEALT-GIFADDPHILLGLAqaLFELGRYAE 142
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 504399196 455 AVLIYDEVIRQRPE--DGDAWVGRGAALQALGRGEEAEAAF 493
Cdd:COG4700 143 ALETLEKLIAKNPDfkSSDAHLLYARALEALGDLEAAEAEL 183
|
|
| QueG |
COG1600 |
Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and ... |
76-118 |
2.50e-05 |
|
Epoxyqueuosine reductase QueG (queuosine biosynthesis) [Translation, ribosomal structure and biogenesis]; Epoxyqueuosine reductase QueG (queuosine biosynthesis) is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441208 [Multi-domain] Cd Length: 345 Bit Score: 46.35 E-value: 2.50e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 504399196 76 AAAALGEVRDARAVGPLIAALKDPDPGVRREAARALGEIGDPQ 118
Cdd:COG1600 303 AAIALGNSGDPAAVPALEALLDDPSPLVREHAAWALGRLGGRE 345
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
300-333 |
2.58e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.25 E-value: 2.58e-05
10 20 30
....*....|....*....|....*....|....
gi 504399196 300 PYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQY 333
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
314-406 |
2.74e-05 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 44.61 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 314 GRLSEAVEAYDVAISL--DP-QYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNN-------KGVALFGQGQ 383
Cdd:CHL00033 49 GEYAEALQNYYEAMRLeiDPyDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNmavichyRGEQAIEQGD 128
|
90 100 110
....*....|....*....|....*....|.
gi 504399196 384 --LSEAI--KAYDV---AIVLDPG-YAQAWN 406
Cdd:CHL00033 129 seIAEAWfdQAAEYwkqAIALAPGnYIEAQN 159
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
307-348 |
3.18e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.92 E-value: 3.18e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 504399196 307 GVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMG 348
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| gliding_GltE |
NF033758 |
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ... |
257-425 |
3.20e-05 |
|
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.
Pssm-ID: 468174 [Multi-domain] Cd Length: 411 Bit Score: 46.35 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 257 EAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHA 336
Cdd:NF033758 179 AALMRDPQSTTALKVMMRSYLDRKQLAMAKLVALRAVKIDQNDPELHHTVGLILLQEGDKDGARLQFKRALEVRADYVPS 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 337 WYNKG-IALDEmgEDEKAIEAYDMAI-SLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYD 414
Cdd:NF033758 259 HVELAqLALDA--EDYPGAEEHLRRIlQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILHR 336
|
170
....*....|..
gi 504399196 415 -QGRLSEAVEAY 425
Cdd:NF033758 337 vKDAPERAVELY 348
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
101-131 |
3.38e-05 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 40.86 E-value: 3.38e-05
10 20 30
....*....|....*....|....*....|.
gi 504399196 101 PGVRREAARALGEIGDPQAIEPLAHlALKDP 131
Cdd:smart00567 1 PLVRHEAAFALGQLGDEEAVPALIK-ALEDE 30
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
272-499 |
4.98e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 45.75 E-value: 4.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 272 KGLSLYDGGRLSEAVVAYDTALSLDPqDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDE 351
Cdd:TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 352 KAI---------------------------------------------------------------EAYDMAISLDPEDA 368
Cdd:TIGR00990 212 DALldltasciidgfrneqsaqaverllkkfaeskakeiletkpenlpsvtfvgnylqsfrpkprpAGLEDSNELDEETG 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 369 NAWNNKGV----ALFGQGqLSEAIKAYDVAIV---LDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMN 441
Cdd:TIGR00990 292 NGQLQLGLkspeSKADES-YEEAARAFEKALDlgkLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIK 370
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 504399196 442 KGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRGREL 499
Cdd:TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
308-404 |
6.06e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.29 E-value: 6.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 308 VALRDLGRLSEAVEAYDVAISLDPQYSH---AWYNKGIALDEMGEDEKAIEAYDMAISLDPED---ANAWNNKGVALFGQ 381
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80
|
90 100
....*....|....*....|...
gi 504399196 382 GQLSEAIKAYDVAIVLDPGYAQA 404
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAA 103
|
|
| COG5096 |
COG5096 |
Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular ... |
65-145 |
8.24e-05 |
|
Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 227427 [Multi-domain] Cd Length: 757 Bit Score: 45.49 E-value: 8.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 65 LEDEASEVRCEAAAALGEVRDARAVG----PLIAALKDPDPGVRREAARALGEI--GDPQAIEPLA-----HLALKDPDG 133
Cdd:COG5096 101 LQDPNEEIRGFALRTLSLLRVKELLGniidPIKKLLTDPHAYVRKTAALAVAKLyrLDKDLYHELGlidilKELVADSDP 180
|
90
....*....|..
gi 504399196 134 GVRGKAVEALAE 145
Cdd:COG5096 181 IVIANALASLAE 192
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
356-389 |
1.02e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 39.45 E-value: 1.02e-04
10 20 30
....*....|....*....|....*....|....
gi 504399196 356 AYDMAISLDPEDANAWNNKGVALFGQGQLSEAIK 389
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
368-434 |
1.29e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 1.29e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504399196 368 ANAWNNKGVALFGQGQLSEAIKAYDVAIVL--------DPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPA 434
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
443-484 |
1.39e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 1.39e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 504399196 443 GLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALG 484
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
402-433 |
1.40e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.04 E-value: 1.40e-04
10 20 30
....*....|....*....|....*....|..
gi 504399196 402 AQAWNNKGVALYDQGRLSEAVEAYDMALSLDP 433
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
288-321 |
1.46e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 39.06 E-value: 1.46e-04
10 20 30
....*....|....*....|....*....|....
gi 504399196 288 AYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVE 321
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
356-499 |
1.62e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.98 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 356 AYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALsldpay 435
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQ------ 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504399196 436 hhAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRGREL 499
Cdd:COG4785 75 --LYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
280-392 |
1.89e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.95 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 280 GRLSEAVVAYDTALS-LDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQY--SHAWYNKGIALDEMGEDEKAIEA 356
Cdd:COG4700 103 GRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEALGDLEAAEAE 182
|
90 100 110
....*....|....*....|....*....|....*.
gi 504399196 357 YDMAISLDPeDANAWNNKGVALFGQGQLSEAIKAYD 392
Cdd:COG4700 183 LEALARRYS-GPEARYRYAKFLARQGRTAEAKELLE 217
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
305-395 |
1.91e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.39 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 305 NKGVALRDLGRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDAnawnnkGVALFGQGQL 384
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG------YEKYLYLGQL 78
|
90
....*....|....
gi 504399196 385 S---EAIKAYDVAI 395
Cdd:cd24142 79 SggeEALQYYEKGI 92
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
406-472 |
2.66e-04 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 42.89 E-value: 2.66e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504399196 406 NNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDA 472
Cdd:COG2912 183 RNLKAAYLREKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEYFLEQCPEDPDA 249
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
345-457 |
2.68e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 43.43 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 345 DEMGEDEkaiEAYDMAISLDPED--ANAWNNKGVALFGQGQLSEAIKAYDVAIVL--DPGYaqaWNNKGVALYDQGRLSE 420
Cdd:TIGR00990 105 DELPEID---ESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECkpDPVY---YSNRAACHNALGDWEK 178
|
90 100 110
....*....|....*....|....*....|....*..
gi 504399196 421 AVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVL 457
Cdd:TIGR00990 179 VVEDTTAALELDPDYSKALNRRANAYDGLGKYADALL 215
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
322-355 |
2.96e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 38.29 E-value: 2.96e-04
10 20 30
....*....|....*....|....*....|....
gi 504399196 322 AYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIE 355
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
308-389 |
2.97e-04 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 42.95 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 308 VALRDLGRLSeaveaYDVAISLDPQYSHAwYNK-GIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSE 386
Cdd:PRK11189 77 LGLRALARND-----FSQALALRPDMADA-YNYlGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYEL 150
|
...
gi 504399196 387 AIK 389
Cdd:PRK11189 151 AQD 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
249-336 |
3.40e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 3.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 249 LIEARRYDEAISI----------DPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWN---NKGVALRDLGR 315
Cdd:COG1729 3 LLKAGDYDEAIAAfkaflkrypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGD 82
|
90 100
....*....|....*....|.
gi 504399196 316 LSEAVEAYDVAISLDPQYSHA 336
Cdd:COG1729 83 YDKARATLEELIKKYPDSEAA 103
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
272-492 |
4.07e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 42.23 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 272 KGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQYSH---------------- 335
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYekylylgqlsggeeal 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 336 AWYNKGIAL---------DEMGEDEKAIE--------AY-------------------------DMAISLDPEDANAWNN 373
Cdd:cd24142 86 QYYEKGIEIleeelqalqAASAEAEEEAEelkrklssALcalaeiymtdlcdepdaeqrceeliTKALELDPTNPEALQT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 374 KGVALFGQGQLSEAIKAYDVAIVLdpgyaqaWNNKGVALYDQGRLSEAVEAYDMALSLDpayhhawMNKGLALRSLGRYE 453
Cdd:cd24142 166 LASLRISQQRPDEAKEALRRSLEL-------WKDLKEEDEEEAEEDEAEEEDVPSYEFR-------ISLAKLLIELEMYE 231
|
250 260 270
....*....|....*....|....*....|....*....
gi 504399196 454 EAVLIYDEVIRQRPEDGDAWVGRGAALQALGRGEEAEAA 492
Cdd:cd24142 232 EALEVLEQLLDEDDEDVEVWYLLGWAYYLLGEKEQEEAA 270
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
438-469 |
4.12e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 4.12e-04
10 20 30
....*....|....*....|....*....|..
gi 504399196 438 AWMNKGLALRSLGRYEEAVLIYDEVIRQRPED 469
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
409-450 |
4.18e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.84 E-value: 4.18e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 504399196 409 GVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLG 450
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| Arm |
pfam00514 |
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ... |
82-114 |
4.70e-04 |
|
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.
Pssm-ID: 425727 [Multi-domain] Cd Length: 41 Bit Score: 37.82 E-value: 4.70e-04
10 20 30
....*....|....*....|....*....|...
gi 504399196 82 EVRDARAVGPLIAALKDPDPGVRREAARALGEI 114
Cdd:pfam00514 7 AVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNL 39
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
387-455 |
4.91e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.47 E-value: 4.91e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504399196 387 AIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEA 455
Cdd:PLN03088 21 AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
402-468 |
5.33e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 5.33e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504399196 402 AQAWNNKGVALYDQGRLSEAVEAYDMALSL--------DPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPE 468
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
165-194 |
6.30e-04 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 37.01 E-value: 6.30e-04
10 20 30
....*....|....*....|....*....|
gi 504399196 165 SVRMRAARALGEIGDPQAIEPLAyLALKDP 194
Cdd:smart00567 2 LVRHEAAFALGQLGDEEAVPALI-KALEDE 30
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
343-464 |
6.89e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.41 E-value: 6.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 343 ALDEMGEDEKAIEAYDMAIS-LDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGY--AQAWNNKGVALYDQGRLS 419
Cdd:COG4700 98 ALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEALGDLE 177
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 504399196 420 EAVEAYDMALSLDPAYHhAWMNKGLALRSLGRYEEAVLIYDEVIR 464
Cdd:COG4700 178 AAEAELEALARRYSGPE-ARYRYAKFLARQGRTAEAKELLEEILD 221
|
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
120-238 |
7.13e-04 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 42.53 E-value: 7.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 120 IEPLAHLALKDPDGGVRGKAVEALAEAGDPAAVTPLIGAIKDENSSVRMRAARALGeigDPQAIEPLAYLAlkDPDGGVR 199
Cdd:PRK13800 564 VPELDDLPPVDRTVVPVGQPPLHGGRAPAEGVSRAAAPATAPEPPSPRILAVLALD---APSVAELAPYLA--DPDPGVR 638
|
90 100 110
....*....|....*....|....*....|....*....
gi 504399196 200 GEAVEALAEAGGPAAVTPLIAALRDADPGVSEKASEALV 238
Cdd:PRK13800 639 RTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLR 677
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
116-421 |
7.47e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.38 E-value: 7.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 116 DPQAIEPL-----AHLALKDPDGGVrGKAVEALAEAGDPAAVTPLIGAIKDENSSVR--MRAARALGEIgDPQAIEPL-- 186
Cdd:TIGR02917 563 NPQEIEPAlalaqYYLGKGQLKKAL-AILNEAADAAPDSPEAWLMLGRAQLAAGDLNkaVSSFKKLLAL-QPDSALALll 640
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 187 ---AYLALKDPDGGVR---------GEAVEA-------LAEAGGPAAVTPLIAALRDADP----GVSEKASEALVIIGDP 243
Cdd:TIGR02917 641 ladAYAVMKNYAKAITslkralelkPDNTEAqiglaqlLLAAKRTESAKKIAKSLQKQHPkaalGFELEGDLYLRQKDYP 720
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 244 RAVApliearRYDEAISIDPASPLAwGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAY 323
Cdd:TIGR02917 721 AAIQ------AYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 324 DVAISLDPQYSHAWYNKGIALDEmGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQ 403
Cdd:TIGR02917 794 QTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872
|
330
....*....|....*...
gi 504399196 404 AWNNKGVALYDQGRLSEA 421
Cdd:TIGR02917 873 IRYHLALALLATGRKAEA 890
|
|
| PRK15174 |
PRK15174 |
Vi polysaccharide transport protein VexE; |
78-331 |
7.94e-04 |
|
Vi polysaccharide transport protein VexE;
Pssm-ID: 185096 [Multi-domain] Cd Length: 656 Bit Score: 42.04 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 78 AALGEVRDARAVGPLIAALKDPDPGVRREAARALGEIGDPQAIEPLAHLALKDPDG-----------GVRGKAVEALAEA 146
Cdd:PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQpedvllvasvlLKSKQYATVADLA 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 147 GDPAAVTPLIGAIKDENSSVRMRAARalgeIGDPQAIEPLAYLALKDPdggvrGEA---VEALAEAGGPAAVTPLIAALR 223
Cdd:PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDK----ELQAISLARTQAQEVPPR-----GDMiatCLSFLNKSRLPEDHDLARALL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 224 DADPGVSEKASEALV--IIGDPRAVAPLieaRRYDEAISIDPASPLAWGGKGLSLYDGG----RLSEAVVAYDTALSLDP 297
Cdd:PRK15174 205 PFFALERQESAGLAVdtLCAVGKYQEAI---QTGESALARGLDGAALRRSLGLAYYQSGrsreAKLQAAEHWRHALQFNS 281
|
250 260 270
....*....|....*....|....*....|....
gi 504399196 298 QDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDP 331
Cdd:PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
72-99 |
8.62e-04 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 36.62 E-value: 8.62e-04
10 20
....*....|....*....|....*...
gi 504399196 72 VRCEAAAALGEVRDARAVGPLIAALKDP 99
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALEDE 30
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
438-469 |
8.63e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 8.63e-04
10 20 30
....*....|....*....|....*....|..
gi 504399196 438 AWMNKGLALRSLGRYEEAVLIYDEVIRQRPED 469
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
336-420 |
9.44e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 40.04 E-value: 9.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 336 AWYNKGIALDEMGEDEKAIEAYDMAISL--DPED-ANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVAL 412
Cdd:PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLeeDPNDrSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116
|
....*...
gi 504399196 413 YDQGRLSE 420
Cdd:PRK02603 117 HKRGEKAE 124
|
|
| HEAT_PBS |
pfam03130 |
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to ... |
103-130 |
9.78e-04 |
|
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to pfam02985. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. This family includes the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/F lyase, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six). All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerization reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif.
Pssm-ID: 308641 [Multi-domain] Cd Length: 27 Bit Score: 36.69 E-value: 9.78e-04
10 20
....*....|....*....|....*...
gi 504399196 103 VRREAARALGEIGDPQAIEPLAHlALKD 130
Cdd:pfam03130 1 VRRAAARALGALGDPEAIPALIE-ALDD 27
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
368-401 |
1.27e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 1.27e-03
10 20 30
....*....|....*....|....*....|....
gi 504399196 368 ANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGY 401
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
351-433 |
1.35e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 40.93 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 351 EKAIEAYDMAISLDPEDANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALS 430
Cdd:PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98
|
...
gi 504399196 431 LDP 433
Cdd:PLN03088 99 LAP 101
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
407-469 |
1.63e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 1.63e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504399196 407 NKGVALYDQGRLSEAVEAYDMAL---SLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPED 469
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
390-423 |
1.64e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 35.98 E-value: 1.64e-03
10 20 30
....*....|....*....|....*....|....
gi 504399196 390 AYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVE 423
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
368-400 |
1.73e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.96 E-value: 1.73e-03
10 20 30
....*....|....*....|....*....|...
gi 504399196 368 ANAWNNKGVALFGQGQLSEAIKAYDVAIVLDPG 400
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
373-435 |
1.96e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 1.96e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504399196 373 NKGVALFGQGQLSEAIKAYDVAI---VLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAY 435
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
115-469 |
2.13e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.84 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 115 GDP-QAIEPLAHLALKDPDGGV-----------RGKAVEALAEA-------GDPAAVTPLIGAI-KDENSSVRMRAA--R 172
Cdd:TIGR02917 411 GDPsEAIADLETAAQLDPELGRadlllilsylrSGQFDKALAAAkklekkqPDNASLHNLLGAIyLGKGDLAKAREAfeK 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 173 ALG-EIGDPQAIEPLAYLAL--KDPDGGVRG------------EAVEALAE----AGGPAAVTPLIAALRDADPGVSEKA 233
Cdd:TIGR02917 491 ALSiEPDFFPAAANLARIDIqeGNPDDAIQRfekvltidpknlRAILALAGlylrTGNEEEAVAWLEKAAELNPQEIEPA 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 234 ---SEALVIIGDP-RAVAPLiearryDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQdpyvwnnKGVA 309
Cdd:TIGR02917 571 lalAQYYLGKGQLkKALAIL------NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-------SALA 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 310 LRDLGRLS-------EAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWNNKGVALFGQG 382
Cdd:TIGR02917 638 LLLLADAYavmknyaKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 383 QLSEAIKAYDVAIVLDPGyAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEV 462
Cdd:TIGR02917 718 DYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796
|
....*..
gi 504399196 463 IRQRPED 469
Cdd:TIGR02917 797 VKKAPDN 803
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
300-332 |
2.26e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.58 E-value: 2.26e-03
10 20 30
....*....|....*....|....*....|...
gi 504399196 300 PYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQ 332
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| Cnd1 |
pfam12717 |
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ... |
72-145 |
2.63e-03 |
|
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.
Pssm-ID: 463677 [Multi-domain] Cd Length: 162 Bit Score: 38.60 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 72 VRCEAAAALGEVR-----DArAVGPLIAALKDPDPGVRREAARALGEIGDPQAIEP---LAHLA--LKDPDGGVRGKAVE 141
Cdd:pfam12717 2 IRALAIRTMGCIRfpnlvEY-LTEPLYRRLKDEDPYVRKTAAMCVAKLILPDMVKVkgfISELAklLEDPNPMVVANALA 80
|
....
gi 504399196 142 ALAE 145
Cdd:pfam12717 81 ALTE 84
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
300-333 |
2.78e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 2.78e-03
10 20 30
....*....|....*....|....*....|....
gi 504399196 300 PYVWNNKGVALRDLGRLSEAVEAYDVAISLDPQY 333
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
336-366 |
2.97e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 2.97e-03
10 20 30
....*....|....*....|....*....|.
gi 504399196 336 AWYNKGIALDEMGEDEKAIEAYDMAISLDPE 366
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| EZ_HEAT |
smart00567 |
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other ... |
198-224 |
3.00e-03 |
|
E-Z type HEAT repeats; Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Pssm-ID: 128837 [Multi-domain] Cd Length: 30 Bit Score: 35.08 E-value: 3.00e-03
10 20
....*....|....*....|....*..
gi 504399196 198 VRGEAVEALAEAGGPAAVTPLIAALRD 224
Cdd:smart00567 3 VRHEAAFALGQLGDEEAVPALIKALED 29
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
415-473 |
3.62e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.02 E-value: 3.62e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 504399196 415 QGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPEDGDAW 473
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
71-114 |
3.86e-03 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 35.42 E-value: 3.86e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 504399196 71 EVRCEAAAALGEVRDAR----------AVGPLIAALKDPDPGVRREAARALGEI 114
Cdd:pfam13513 2 RVREAAALALGSLAEGGpdllapavpeLLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
266-299 |
3.88e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 3.88e-03
10 20 30
....*....|....*....|....*....|....
gi 504399196 266 PLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQD 299
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
307-442 |
4.44e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 38.71 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 307 GVALRDLGRLSEAVEAYDVAIS-LDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPE--DANAWNNKGVALFGQGQ 383
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDfkSSDAHLLYARALEALGD 175
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504399196 384 LSEAIKAYDVAIVLDPGYAqAWNNKGVALYDQGRLSEAVEAYDMALSLD---PAY----HHAWMNK 442
Cdd:COG4700 176 LEAAEAELEALARRYSGPE-ARYRYAKFLARQGRTAEAKELLEEILDEAkhmPKHyrrlNREWIRE 240
|
|
| HEAT_PBS |
pfam03130 |
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to ... |
166-186 |
5.74e-03 |
|
PBS lyase HEAT-like repeat; This family contains a short bi-helical repeat that is related to pfam02985. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. This family includes the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/F lyase, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six). All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerization reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif.
Pssm-ID: 308641 [Multi-domain] Cd Length: 27 Bit Score: 34.38 E-value: 5.74e-03
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
383-499 |
5.85e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 37.63 E-value: 5.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 383 QLSEAIKAYDVAIVLDPGYAQAWNNKGVALYDQGRLSEAVEAYDMALSLDPAYHHAWMNKGLALRSLGRYEEAVLIYDEV 462
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 504399196 463 IRQRPEDGDAWVGRGAALQALGRGEEAEAAFSRGREL 499
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
254-332 |
6.64e-03 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 38.72 E-value: 6.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 254 RYD--EAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDPQDPYVWNNKGVALRDLGRLSEAVEAYDVAISLDP 331
Cdd:PRK11189 84 RNDfsQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
|
.
gi 504399196 332 Q 332
Cdd:PRK11189 164 N 164
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
436-468 |
6.72e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 34.29 E-value: 6.72e-03
10 20 30
....*....|....*....|....*....|...
gi 504399196 436 HHAWMNKGLALRSLGRYEEAVLIYDEVIRQRPE 468
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
302-366 |
7.12e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.44 E-value: 7.12e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504399196 302 VWNNKGVALRDLGRLSEAVEAYDVAISL--------DPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPE 366
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
101-177 |
7.54e-03 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 34.65 E-value: 7.54e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504399196 101 PGVRREAARALGEI--GDPQAIEPLAhlalkdpdggvrgkavealaeagdPAAVTPLIGAIKDENSSVRMRAARALGEI 177
Cdd:pfam13513 1 WRVREAAALALGSLaeGGPDLLAPAV------------------------PELLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
314-372 |
8.04e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 34.87 E-value: 8.04e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 504399196 314 GRLSEAVEAYDVAISLDPQYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDANAWN 372
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
251-297 |
8.26e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.92 E-value: 8.26e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 504399196 251 EARRYDEAISIDPASPLAWGGKGLSLYDGGRLSEAVVAYDTALSLDP 297
Cdd:COG3063 44 EAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| PRK15359 |
PRK15359 |
type III secretion system chaperone protein SscB; Provisional |
256-369 |
9.21e-03 |
|
type III secretion system chaperone protein SscB; Provisional
Pssm-ID: 185257 [Multi-domain] Cd Length: 144 Bit Score: 36.90 E-value: 9.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504399196 256 DEAISIDPASPLAwggKGLSLYDGGRLSEAVVAYDTalsLDPQDPYVWNNKgVALRD----LGRLSEAVEAYDVAISLDP 331
Cdd:PRK15359 17 KQLLSVDPETVYA---SGYASWQEGDYSRAVIDFSW---LVMAQPWSWRAH-IALAGtwmmLKEYTTAINFYGHALMLDA 89
|
90 100 110
....*....|....*....|....*....|....*...
gi 504399196 332 QYSHAWYNKGIALDEMGEDEKAIEAYDMAISLDPEDAN 369
Cdd:PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127
|
|
| |
