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Conserved domains on  [gi|504398499|ref|WP_014585601|]
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bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthase [Methanothrix harundinacea]

Protein Classification

similar to bifunctional enzyme Fae/Hps( domain architecture ID 11486551)

protein similar to bifunctional enzyme Fae/Hps

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PRK13307 PRK13307
bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthase;
1-396 0e+00

bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthase;


:

Pssm-ID: 183964 [Multi-domain]  Cd Length: 391  Bit Score: 661.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   1 MFLIGEALIGDEPELAHVDLLIGDKDGPVGTAFASGLAQLSAGHTPLLSVIRPNLPPKPATLIVPKVTVKNMEQAAAIFG 80
Cdd:PRK13307   1 MYLIGEALIGEGNELAHIDLIIGDKEGPVGQAFANGLTQLSAGHTPLLAVIRPNLITKPATLIVPKVTVKNMEQAELIFG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499  81 PAQNAVAKAVADSVAEGVIPKAEVENLVVIASVFIHPQARDYDAIYRYNYGATKLAVKRAMEGFPDIDTVLYEKDRSTHP 160
Cdd:PRK13307  81 PAQAAVAKAVADAVEEGIIPKDKAEDLVIVASVFIHPTAKDYNKIYQYNYGATKLAIKRALEGFPDVDKVLYEKDRALHP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 161 IMGFRVIRLWDPPYLQVALDLVDLTVVRRVLSQLPDSDHLLIEVGTPLVKKFGASVVKEIRNVRPSSFVVLDLKTLDTGN 240
Cdd:PRK13307 161 IMGFKVTRLWDPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 241 LEVRLAADATADAVVISGLAPQKTLELAIREARKTGIYSVIDMLNVPDPLEVLRSLAVLPDVVEMHRAIDQEAERHNWEA 320
Cdd:PRK13307 241 LEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGN 320
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504398499 321 IAEIKRMaassDRKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELKQtEIDQYRVMTDF 396
Cdd:PRK13307 321 IKEIKKA----GGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKLKP-DIDQFRLMTDF 391
 
Name Accession Description Interval E-value
PRK13307 PRK13307
bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthase;
1-396 0e+00

bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthase;


Pssm-ID: 183964 [Multi-domain]  Cd Length: 391  Bit Score: 661.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   1 MFLIGEALIGDEPELAHVDLLIGDKDGPVGTAFASGLAQLSAGHTPLLSVIRPNLPPKPATLIVPKVTVKNMEQAAAIFG 80
Cdd:PRK13307   1 MYLIGEALIGEGNELAHIDLIIGDKEGPVGQAFANGLTQLSAGHTPLLAVIRPNLITKPATLIVPKVTVKNMEQAELIFG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499  81 PAQNAVAKAVADSVAEGVIPKAEVENLVVIASVFIHPQARDYDAIYRYNYGATKLAVKRAMEGFPDIDTVLYEKDRSTHP 160
Cdd:PRK13307  81 PAQAAVAKAVADAVEEGIIPKDKAEDLVIVASVFIHPTAKDYNKIYQYNYGATKLAIKRALEGFPDVDKVLYEKDRALHP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 161 IMGFRVIRLWDPPYLQVALDLVDLTVVRRVLSQLPDSDHLLIEVGTPLVKKFGASVVKEIRNVRPSSFVVLDLKTLDTGN 240
Cdd:PRK13307 161 IMGFKVTRLWDPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 241 LEVRLAADATADAVVISGLAPQKTLELAIREARKTGIYSVIDMLNVPDPLEVLRSLAVLPDVVEMHRAIDQEAERHNWEA 320
Cdd:PRK13307 241 LEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGN 320
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504398499 321 IAEIKRMaassDRKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELKQtEIDQYRVMTDF 396
Cdd:PRK13307 321 IKEIKKA----GGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKLKP-DIDQFRLMTDF 391
Fae COG1795
Formaldehyde-activating enzyme (5,6,7,8-tetrahydromethanopterin hydrolyase) [Energy production ...
1-166 3.14e-104

Formaldehyde-activating enzyme (5,6,7,8-tetrahydromethanopterin hydrolyase) [Energy production and conversion];


Pssm-ID: 441400  Cd Length: 171  Bit Score: 304.83  E-value: 3.14e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   1 MFLIGEALIGDEPELAHVDLLIGDKDGPVGTAFASGLAQLSAGHTPLLSVIRPNLPPKPATLIVPKVTVKNMEQAAAIFG 80
Cdd:COG1795    5 MMLIGEALVGDGNEVAHIDLIIGPRDGPVGTAFANALANQSAGHTPLLAVLAPNLPVKPATLMVPKVTIKNAKQANQMFG 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499  81 PAQNAVAKAVADSVAEGVIPKAEVENLVVIASVFIHPQARDYDAIYRYNYGATKLAVKRAMEGFPDIDTVLYEKDRSTHP 160
Cdd:COG1795   85 PAQAAVAKAVADAVAEGVIPKDEADDLVIIVSVFIHPEADDDKKIYRYNYEATKLAIKRAMAGEPSIDEVLANKDRAKHP 164

                 ....*.
gi 504398499 161 IMGFRV 166
Cdd:COG1795  165 FAGFKV 170
one_C_fae TIGR03126
formaldehyde-activating enzyme; This family consists of formaldehyde-activating enzyme, or the ...
2-161 2.34e-99

formaldehyde-activating enzyme; This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.


Pssm-ID: 132170  Cd Length: 160  Bit Score: 292.33  E-value: 2.34e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499    2 FLIGEALIGDEPELAHVDLLIGDKDGPVGTAFASGLAQLSAGHTPLLSVIRPNLPPKPATLIVPKVTVKNMEQAAAIFGP 81
Cdd:TIGR03126   1 YRIGEALIGEGNEVAHIDLIIGPKGGPVGTAFANALANLSAGHTPLLAVLRPNLPTKPATLIVPKVTIKNMAQAVQMFGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   82 AQNAVAKAVADSVAEGVIPKAEVENLVVIASVFIHPQARDYDAIYRYNYGATKLAVKRAMEGFPDIDTVLYEKDRSTHPI 161
Cdd:TIGR03126  81 AQAAVAKAVADSVEEGIIPKDEADDLVIIVSVFIHPEAKDDRKIYKYNYEATKLAIKRAMEGEPSVDEVLAKKDSATHPF 160
Fae pfam08714
Formaldehyde-activating enzyme (Fae); Formaldehyde-activating enzyme is an enzyme required for ...
5-162 5.81e-98

Formaldehyde-activating enzyme (Fae); Formaldehyde-activating enzyme is an enzyme required for energy metabolism and formaldehyde detoxification. It catalyzes the condensation of formaldehyde and tetrahydromethanopterin to methylene tetrahydromethanopterin.


Pssm-ID: 430170  Cd Length: 158  Bit Score: 288.69  E-value: 5.81e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499    5 GEALIGDEPELAHVDLLIGDKDGPVGTAFASGLAQLSAGHTPLLSVIRPNLPPKPATLIVPKVTVKNMEQAAAIFGPAQN 84
Cdd:pfam08714   1 GEALVGEGNEVAHIDLIIGPKGGPVGTAFANALTNQSAGHTPLLAVLRPNLMVKPATLMVPKVTIKNMKQAELMFGPAQA 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504398499   85 AVAKAVADSVAEGVIPKAEVENLVVIASVFIHPQARDYDAIYRYNYGATKLAVKRAMEGFPDIDTVLYEKDRSTHPIM 162
Cdd:pfam08714  81 AVAKAVADAVEEGIIPKDEADDLVIIVSVFIHPDALDKRKIYRYNYEATKLAIKRAMAGEPSIDEVLAEKDRAKHPFM 158
KGPDC_HPS cd04726
3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate ...
173-378 3.76e-64

3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.


Pssm-ID: 240077 [Multi-domain]  Cd Length: 202  Bit Score: 203.58  E-value: 3.76e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 173 PYLQVALDLVDLTVVRRVLSQLPDSdHLLIEVGTPLVKKFGASVVKEIRNVRPSSFVVLDLKTLDTGNLEVRLAADATAD 252
Cdd:cd04726    1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGAD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 253 AVVISGLAPQKTLELAIREARKTGIYSVIDMLNVPDPLEVLRSLAVLPDVVEMHRAIDQEAERhNWEAIAEIKRMaaSSD 332
Cdd:cd04726   80 IVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAG-GWWPEDDLKKV--KKL 156
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 504398499 333 RKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQF 378
Cdd:cd04726  157 LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202
OMPdecase smart00934
Orotidine 5'-phosphate decarboxylase / HUMPS family; Orotidine 5'-phosphate decarboxylase ...
174-378 1.35e-29

Orotidine 5'-phosphate decarboxylase / HUMPS family; Orotidine 5'-phosphate decarboxylase (OMPdecase) catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein.


Pssm-ID: 214921  Cd Length: 212  Bit Score: 113.80  E-value: 1.35e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   174 YLQVALDLVDLTVVRRVLSQLPDSdHLLIEVGTPLVKKFGASVVKEIRNVRPSsFVVLDLKTLDTGNLEVRLAADATADA 253
Cdd:smart00934   1 RLIVALDVPDLEEALELADALGDS-VDIIKVGTELFLAEGPEGVKELKELFGF-PVFLDLKLHDIPNTVARAARAAAELG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   254 VV---ISGLAPQKTLELAIREARKTG-IYSVIDMLNVPDPLEV--------------LRSLAVLPDVVEMHRAIDQeaer 315
Cdd:smart00934  79 ADavtVHAYAGSDMIEAALEAAKKYGpGLLAVTVLTSPGAEDLqelgdesleeqvlrLAKLAKEAGLDGVVCSATE---- 154
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504398499   316 hnweaiAEIKRMAASSDRKVLVAvagGI----RVDTVASALSSGADIVVTGRAITGSKDVRDAAEQF 378
Cdd:smart00934 155 ------PELIRRALGPDFLILTP---GIgdqgRVATPAVAIGAGADIIVVGRPITQAADPVEAAEAI 212
 
Name Accession Description Interval E-value
PRK13307 PRK13307
bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthase;
1-396 0e+00

bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthase;


Pssm-ID: 183964 [Multi-domain]  Cd Length: 391  Bit Score: 661.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   1 MFLIGEALIGDEPELAHVDLLIGDKDGPVGTAFASGLAQLSAGHTPLLSVIRPNLPPKPATLIVPKVTVKNMEQAAAIFG 80
Cdd:PRK13307   1 MYLIGEALIGEGNELAHIDLIIGDKEGPVGQAFANGLTQLSAGHTPLLAVIRPNLITKPATLIVPKVTVKNMEQAELIFG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499  81 PAQNAVAKAVADSVAEGVIPKAEVENLVVIASVFIHPQARDYDAIYRYNYGATKLAVKRAMEGFPDIDTVLYEKDRSTHP 160
Cdd:PRK13307  81 PAQAAVAKAVADAVEEGIIPKDKAEDLVIVASVFIHPTAKDYNKIYQYNYGATKLAIKRALEGFPDVDKVLYEKDRALHP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 161 IMGFRVIRLWDPPYLQVALDLVDLTVVRRVLSQLPDSDHLLIEVGTPLVKKFGASVVKEIRNVRPSSFVVLDLKTLDTGN 240
Cdd:PRK13307 161 IMGFKVTRLWDPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 241 LEVRLAADATADAVVISGLAPQKTLELAIREARKTGIYSVIDMLNVPDPLEVLRSLAVLPDVVEMHRAIDQEAERHNWEA 320
Cdd:PRK13307 241 LEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGN 320
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504398499 321 IAEIKRMaassDRKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELKQtEIDQYRVMTDF 396
Cdd:PRK13307 321 IKEIKKA----GGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKLKP-DIDQFRLMTDF 391
Fae COG1795
Formaldehyde-activating enzyme (5,6,7,8-tetrahydromethanopterin hydrolyase) [Energy production ...
1-166 3.14e-104

Formaldehyde-activating enzyme (5,6,7,8-tetrahydromethanopterin hydrolyase) [Energy production and conversion];


Pssm-ID: 441400  Cd Length: 171  Bit Score: 304.83  E-value: 3.14e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   1 MFLIGEALIGDEPELAHVDLLIGDKDGPVGTAFASGLAQLSAGHTPLLSVIRPNLPPKPATLIVPKVTVKNMEQAAAIFG 80
Cdd:COG1795    5 MMLIGEALVGDGNEVAHIDLIIGPRDGPVGTAFANALANQSAGHTPLLAVLAPNLPVKPATLMVPKVTIKNAKQANQMFG 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499  81 PAQNAVAKAVADSVAEGVIPKAEVENLVVIASVFIHPQARDYDAIYRYNYGATKLAVKRAMEGFPDIDTVLYEKDRSTHP 160
Cdd:COG1795   85 PAQAAVAKAVADAVAEGVIPKDEADDLVIIVSVFIHPEADDDKKIYRYNYEATKLAIKRAMAGEPSIDEVLANKDRAKHP 164

                 ....*.
gi 504398499 161 IMGFRV 166
Cdd:COG1795  165 FAGFKV 170
one_C_fae TIGR03126
formaldehyde-activating enzyme; This family consists of formaldehyde-activating enzyme, or the ...
2-161 2.34e-99

formaldehyde-activating enzyme; This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.


Pssm-ID: 132170  Cd Length: 160  Bit Score: 292.33  E-value: 2.34e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499    2 FLIGEALIGDEPELAHVDLLIGDKDGPVGTAFASGLAQLSAGHTPLLSVIRPNLPPKPATLIVPKVTVKNMEQAAAIFGP 81
Cdd:TIGR03126   1 YRIGEALIGEGNEVAHIDLIIGPKGGPVGTAFANALANLSAGHTPLLAVLRPNLPTKPATLIVPKVTIKNMAQAVQMFGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   82 AQNAVAKAVADSVAEGVIPKAEVENLVVIASVFIHPQARDYDAIYRYNYGATKLAVKRAMEGFPDIDTVLYEKDRSTHPI 161
Cdd:TIGR03126  81 AQAAVAKAVADSVEEGIIPKDEADDLVIIVSVFIHPEAKDDRKIYKYNYEATKLAIKRAMEGEPSVDEVLAKKDSATHPF 160
Fae pfam08714
Formaldehyde-activating enzyme (Fae); Formaldehyde-activating enzyme is an enzyme required for ...
5-162 5.81e-98

Formaldehyde-activating enzyme (Fae); Formaldehyde-activating enzyme is an enzyme required for energy metabolism and formaldehyde detoxification. It catalyzes the condensation of formaldehyde and tetrahydromethanopterin to methylene tetrahydromethanopterin.


Pssm-ID: 430170  Cd Length: 158  Bit Score: 288.69  E-value: 5.81e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499    5 GEALIGDEPELAHVDLLIGDKDGPVGTAFASGLAQLSAGHTPLLSVIRPNLPPKPATLIVPKVTVKNMEQAAAIFGPAQN 84
Cdd:pfam08714   1 GEALVGEGNEVAHIDLIIGPKGGPVGTAFANALTNQSAGHTPLLAVLRPNLMVKPATLMVPKVTIKNMKQAELMFGPAQA 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504398499   85 AVAKAVADSVAEGVIPKAEVENLVVIASVFIHPQARDYDAIYRYNYGATKLAVKRAMEGFPDIDTVLYEKDRSTHPIM 162
Cdd:pfam08714  81 AVAKAVADAVEEGIIPKDEADDLVIIVSVFIHPDALDKRKIYRYNYEATKLAIKRAMAGEPSIDEVLAEKDRAKHPFM 158
UlaD COG0269
3-keto-L-gulonate-6-phosphate decarboxylase [Carbohydrate transport and metabolism];
170-385 2.94e-69

3-keto-L-gulonate-6-phosphate decarboxylase [Carbohydrate transport and metabolism];


Pssm-ID: 440039  Cd Length: 212  Bit Score: 217.34  E-value: 2.94e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 170 WDPPYLQVALDLVDLTVVRRVLSQlPDSDHLLIEVGTPLVKKFGASVVKEIRNVRPSSFVVLDLKTLDTGNLEVRLAADA 249
Cdd:COG0269    1 MMKPKLQVALDLLDLDEALAIAKE-VAGGVDIIEAGTPLIKSEGMRAVRELRAAFPDKIIVADLKTMDAGALEAEMAFKA 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 250 TADAVVISGLAPQKTLELAIREARKTGIYSVIDMLNVPDPLEVLRSLAVL-PDVVEMHRAIDQEAERHN-WEAIAEIKRM 327
Cdd:COG0269   80 GADIVTVLGAADDATIKGAVKAAKKYGKEVQVDLIGVWDPVERAKELEELgVDIVILHRGIDAQAAGGSpLDDLKKIKEL 159
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 504398499 328 AassdrKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELKQT 385
Cdd:COG0269  160 V-----GVPVAVAGGINPETLPEFLGAGADIVIVGRAITGAKDPAAAAREIREAIDKA 212
KGPDC_HPS cd04726
3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate ...
173-378 3.76e-64

3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.


Pssm-ID: 240077 [Multi-domain]  Cd Length: 202  Bit Score: 203.58  E-value: 3.76e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 173 PYLQVALDLVDLTVVRRVLSQLPDSdHLLIEVGTPLVKKFGASVVKEIRNVRPSSFVVLDLKTLDTGNLEVRLAADATAD 252
Cdd:cd04726    1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGAD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 253 AVVISGLAPQKTLELAIREARKTGIYSVIDMLNVPDPLEVLRSLAVLPDVVEMHRAIDQEAERhNWEAIAEIKRMaaSSD 332
Cdd:cd04726   80 IVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAG-GWWPEDDLKKV--KKL 156
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 504398499 333 RKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQF 378
Cdd:cd04726  157 LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202
PRK07028 PRK07028
bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
173-378 2.03e-32

bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated


Pssm-ID: 235912 [Multi-domain]  Cd Length: 430  Bit Score: 126.67  E-value: 2.03e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 173 PYLQVALDLVDLTVVRRVLSQLPDSDHLLIEVGTPLVKKFGASVVKEIRNVRPSSFVVLDLKTLDTGNLEVRLAADATAD 252
Cdd:PRK07028   4 PILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGAD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 253 AVVISGLAPQKTLELAIREARKTGIYSVIDMLNVPDPLEVLRSLAVLP-DVVEMHRAIDQEAErhNWEAIAEIKRMaaSS 331
Cdd:PRK07028  84 IVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGvDYINVHVGIDQQML--GKDPLELLKEV--SE 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 504398499 332 DRKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQF 378
Cdd:PRK07028 160 EVSIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKI 206
OMPdecase smart00934
Orotidine 5'-phosphate decarboxylase / HUMPS family; Orotidine 5'-phosphate decarboxylase ...
174-378 1.35e-29

Orotidine 5'-phosphate decarboxylase / HUMPS family; Orotidine 5'-phosphate decarboxylase (OMPdecase) catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein.


Pssm-ID: 214921  Cd Length: 212  Bit Score: 113.80  E-value: 1.35e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   174 YLQVALDLVDLTVVRRVLSQLPDSdHLLIEVGTPLVKKFGASVVKEIRNVRPSsFVVLDLKTLDTGNLEVRLAADATADA 253
Cdd:smart00934   1 RLIVALDVPDLEEALELADALGDS-VDIIKVGTELFLAEGPEGVKELKELFGF-PVFLDLKLHDIPNTVARAARAAAELG 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499   254 VV---ISGLAPQKTLELAIREARKTG-IYSVIDMLNVPDPLEV--------------LRSLAVLPDVVEMHRAIDQeaer 315
Cdd:smart00934  79 ADavtVHAYAGSDMIEAALEAAKKYGpGLLAVTVLTSPGAEDLqelgdesleeqvlrLAKLAKEAGLDGVVCSATE---- 154
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504398499   316 hnweaiAEIKRMAASSDRKVLVAvagGI----RVDTVASALSSGADIVVTGRAITGSKDVRDAAEQF 378
Cdd:smart00934 155 ------PELIRRALGPDFLILTP---GIgdqgRVATPAVAIGAGADIIVVGRPITQAADPVEAAEAI 212
OMPdecase pfam00215
Orotidine 5'-phosphate decarboxylase / HUMPS family; This family includes Orotidine 5 ...
173-378 4.17e-26

Orotidine 5'-phosphate decarboxylase / HUMPS family; This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to pfam00834.


Pssm-ID: 395160  Cd Length: 215  Bit Score: 104.27  E-value: 4.17e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499  173 PYLQVALDLVDLTVVRRVLSQLPDSdHLLIEVGTPLVKKFGASVVKEIRNVRpsSFVVLDLKTLDTGNLEVRLAADATAD 252
Cdd:pfam00215   1 PNLCVALDVPTLEEALELADELGPY-VDILKVGTPLFEAFGLKLVAELRKHG--FLIFLDLKFADIGNTVAKQAKYKAKL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499  253 ---AVVISGLAPQKTLELAIREARKTG-IYSVIDMLNVPDPLEVLRSLAVLPDVVEMHRAIDQEAERHNWEAIAEIKRMA 328
Cdd:pfam00215  78 gadIVTVHAYAGEGTLKAAKEAAEEYGrGLLLVAELSSKGSLDLQEEGDLGYTQEIVHRAADLAAGVDGVVASATEALRE 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 504398499  329 ASSDRKVLV-------AVAGGIRVDTV-ASALSSGADIVVTGRAITGSKDVRDAAEQF 378
Cdd:pfam00215 158 ILPDFLILTpgiglqgGDAGGQQRVTTpAVAKEAGADIIIVGRGITGAGDPVAAARAI 215
ulaD PRK13306
3-dehydro-L-gulonate-6-phosphate decarboxylase;
173-390 5.84e-11

3-dehydro-L-gulonate-6-phosphate decarboxylase;


Pssm-ID: 237344  Cd Length: 216  Bit Score: 61.87  E-value: 5.84e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 173 PYLQVALDLVDLTVVRRVLSQLPDS-DhlLIEVGTPLVKKFGASVVKEIRNVRPSSFVVLDLKTLDTGNLEVRLAADATA 251
Cdd:PRK13306   4 PLLQIALDNQDLESAIEDAKKVAEEvD--IIEVGTILLLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 252 DAVVISGLAPQKTLELAIREARKTG------IYSVIDMLNVPDPLEVLRSLAVlpdvveMHRAIDQEAERHNWEAiAEIK 325
Cdd:PRK13306  82 DWVTVICAAHIPTIKAALKVAKEFNgeiqieLYGNWTWEQAQQWRDAGISQVI------YHRSRDAQLAGVAWGE-KDLN 154
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504398499 326 RMAASSDRKVLVAVAGGIRVDTVasALSSGAD--IVVTGRAITGSKDVRDAAEQFlaelkQTEIDQY 390
Cdd:PRK13306 155 KVKKLSDMGFKVSVTGGLVVEDL--KLFKGIPvkTFIAGRAIRGAADPAAAARAF-----KDEIAKY 214
Rpe COG0036
Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; ...
321-384 8.62e-09

Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Pentose-5-phosphate-3-epimerase is part of the Pathway/BioSystem: Pentose phosphate pathway


Pssm-ID: 439806  Cd Length: 218  Bit Score: 55.47  E-value: 8.62e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504398499 321 IAEIKRMAASSDRKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELKQ 384
Cdd:COG0036  154 IRRLRELIDERGLDILIEVDGGINAETIPELAEAGADVLVAGSAVFGAEDYAAAIAALREAAAA 217
RPE cd00429
Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of ...
318-378 2.88e-07

Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.


Pssm-ID: 238244  Cd Length: 211  Bit Score: 50.56  E-value: 2.88e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504398499 318 WEAIAEIKRMAASSDRKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQF 378
Cdd:cd00429  150 LEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210
OMP_decarboxylase_like cd04725
Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates ...
177-378 1.14e-06

Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.


Pssm-ID: 240076  Cd Length: 216  Bit Score: 49.10  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 177 VALDLVDLTVVRRVLSQLPDSDhLLIEVGTPLVKKFGASVVKEIRNVrpSSFVVLDLKTLDTGN---LEVRLAADATADA 253
Cdd:cd04725    3 VALDPPDEEFALALIDALGPYV-CAVKVGLELFEAAGPEIVKELREL--GFLVFLDLKLGDIPNtvaAAAEALLGLGADA 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 254 VVISGLAPQKTLE--LAIREARKTGIYSVIDMLNvPDPLEVLRSLAVLPDVVEMHRAidQEAERHN--------WEAiaE 323
Cdd:cd04725   80 VTVHPYGGSDMLKaaLEAAEEKGKGLFAVTVLSS-PGALDLQEGIPGSLEDLVERLA--KLAREAGvdgvvcgaTEP--E 154
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504398499 324 IKRMAASSDRKVLV-------AVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQF 378
Cdd:cd04725  155 ALRRALGPDFLILTpgigaqgSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEAI 216
PRK00230 PRK00230
orotidine-5'-phosphate decarboxylase;
177-382 4.35e-06

orotidine-5'-phosphate decarboxylase;


Pssm-ID: 234695  Cd Length: 230  Bit Score: 47.44  E-value: 4.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 177 VALDLVDLTVVRRVLSQLPDSDhLLIEVGTPLVKKFGASVVKEIRNVRPSSFvvLDLKTLDTGNlevrlaadatadavvi 256
Cdd:PRK00230   7 VALDFPSKEEALAFLDQLDPAV-LFVKVGMELFTAGGPQFVRELKQRGFKVF--LDLKLHDIPN---------------- 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 257 sglapqkTLELAIREARKTGIysviDMLNV-------------------PDPL------------EVLRSLAV---LPDV 302
Cdd:PRK00230  68 -------TVAKAVRALAKLGV----DMVNVhasggprmmkaarealepkSRPLliavtvltsmdeEDLAELGInlsLEEQ 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 303 VEmHRA-------ID------QEAerhnweaiAEIKRmAASSDRKVlvaVAGGIR-----------VDTVASALSSGADI 358
Cdd:PRK00230 137 VL-RLAklaqeagLDgvvcsaQEA--------AAIRE-ATGPDFLL---VTPGIRpagsdagdqkrVMTPAQAIAAGSDY 203
                        250       260
                 ....*....|....*....|....
gi 504398499 359 VVTGRAITGSKDVRDAAEQFLAEL 382
Cdd:PRK00230 204 IVVGRPITQAADPAAAYEAILAEI 227
thiE PRK00043
thiamine phosphate synthase;
324-385 4.36e-06

thiamine phosphate synthase;


Pssm-ID: 234590 [Multi-domain]  Cd Length: 212  Bit Score: 47.10  E-value: 4.36e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504398499 324 IKRMAASSDRKVLVAVaGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELKQT 385
Cdd:PRK00043 151 LREIRAAVGDIPIVAI-GGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRAA 211
PRK13813 PRK13813
orotidine 5'-phosphate decarboxylase; Provisional
173-383 1.86e-05

orotidine 5'-phosphate decarboxylase; Provisional


Pssm-ID: 237520  Cd Length: 215  Bit Score: 45.36  E-value: 1.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 173 PYLQVALDLVDLTVVRRVLSQLPDSdHLLIEVGTPLVKKFGASVVKEIRNVRPssfVVLDLKTLDTGNlEVRLAADATAD 252
Cdd:PRK13813   4 SRIILALDVTDRERALKIAEELDDY-VDAIKVGWPLVLASGLGIIEELKRYAP---VIADLKVADIPN-TNRLICEAVFE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 253 A----VVISGLAPQKTLELAIREARKTG--IYSVIDMlNVPDPLEVLRSLAVlpDVVEMHRAID--------QEAERhnw 318
Cdd:PRK13813  79 AgawgIIVHGFTGRDSLKAVVEAAAESGgkVFVVVEM-SHPGALEFIQPHAD--KLAKLAQEAGafgvvapaTRPER--- 152
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504398499 319 eaIAEIKRMAAssdrKVLVAVAGGIRVD--TVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELK 383
Cdd:PRK13813 153 --VRYIRSRLG----DELKIISPGIGAQggKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIR 213
PRK05581 PRK05581
ribulose-phosphate 3-epimerase; Validated
321-383 1.16e-04

ribulose-phosphate 3-epimerase; Validated


Pssm-ID: 235515  Cd Length: 220  Bit Score: 42.86  E-value: 1.16e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504398499 321 IAEIKRMAASSDRKVLVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELK 383
Cdd:PRK05581 157 IRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAELA 219
ThiE COG0352
Thiamine monophosphate synthase [Coenzyme transport and metabolism]; Thiamine monophosphate ...
321-385 1.20e-04

Thiamine monophosphate synthase [Coenzyme transport and metabolism]; Thiamine monophosphate synthase is part of the Pathway/BioSystem: Thiamine biosynthesis


Pssm-ID: 440121 [Multi-domain]  Cd Length: 206  Bit Score: 42.86  E-value: 1.20e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504398499 321 IAEIKRMAASSDRKVlvaVA-GGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELKQT 385
Cdd:COG0352  144 LEGLAWWAELVEIPV---VAiGGITPENAAEVLAAGADGVAVISAIWGAPDPAAAARELRAALEAA 206
PyrF COG0284
Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]; Orotidine-5 ...
344-384 3.60e-04

Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]; Orotidine-5'-phosphate decarboxylase is part of the Pathway/BioSystem: Pyrimidine biosynthesis


Pssm-ID: 440053  Cd Length: 228  Bit Score: 41.63  E-value: 3.60e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 504398499 344 RVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLAELKQ 384
Cdd:COG0284  188 RVGTPAEAIAAGADYLVVGRPITYAGDPRAAAEAIREEIAA 228
LOX_like_FMN cd04737
L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing ...
320-383 4.20e-04

L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).


Pssm-ID: 240088 [Multi-domain]  Cd Length: 351  Bit Score: 42.04  E-value: 4.20e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504398499 320 AIAEIKRMAASSDRKVLVAVAGGIRVDT-VASALSSGADIVVTGR------AITGSKDVRDAAEQFLAELK 383
Cdd:cd04737  262 SFDSLPEIAEAVNHRVPIIFDSGVRRGEhVFKALASGADAVAVGRpvlyglALGGAQGVASVLEHLNKELK 332
Ribul_P_3_epim pfam00834
Ribulose-phosphate 3 epimerase family; This enzyme catalyzes the conversion of D-ribulose ...
319-365 2.33e-03

Ribulose-phosphate 3 epimerase family; This enzyme catalyzes the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.


Pssm-ID: 395672  Cd Length: 198  Bit Score: 38.85  E-value: 2.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 504398499  319 EAIAEIKRMAASSDRKVLVAVAGGIRVDTVASALSSGADIVVTGRAI 365
Cdd:pfam00834 151 EKIRKVRKMIDERGLDTLIEVDGGIKLDNIPQIAEAGADVIVAGSAV 197
PLN02334 PLN02334
ribulose-phosphate 3-epimerase
321-374 3.55e-03

ribulose-phosphate 3-epimerase


Pssm-ID: 215192  Cd Length: 229  Bit Score: 38.44  E-value: 3.55e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504398499 321 IAEIKRMAASSDrkvlVAVAGGIRVDTVASALSSGADIVVTGRAITGSKDVRDA 374
Cdd:PLN02334 165 VRALRKKYPELD----IEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEV 214
TMP_TenI cd00564
Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step ...
321-380 3.57e-03

Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.


Pssm-ID: 238317 [Multi-domain]  Cd Length: 196  Bit Score: 38.27  E-value: 3.57e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504398499 321 IAEIKRMAASSDRKVlVAVaGGIRVDTVASALSSGADIVVTGRAITGSKDVRDAAEQFLA 380
Cdd:cd00564  139 LELLREIAELVEIPV-VAI-GGITPENAAEVLAAGADGVAVISAITGADDPAAAARELLA 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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