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Conserved domains on  [gi|504383303|ref|WP_014570405|]
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MULTISPECIES: gallidermin/nisin family lantibiotic [Lactococcus]

Protein Classification

similar to lantibiotic nisin-A( domain architecture ID 10023674)

protein similar to lantibiotic nisin-A

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
lantibio_gallid TIGR03731
lantibiotic, gallidermin/nisin family; Members of this family are lantibiotic precursors in ...
 1-50 9.13e-12

lantibiotic, gallidermin/nisin family; Members of this family are lantibiotic precursors in the family that includes gallidermin, nisin, mutacin, epidermin, and streptin. [Cellular processes, Toxin production and resistance]


:

Pssm-ID: 274753  Cd Length: 48  Bit Score: 53.21  E-value: 9.13e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504383303   1 MSTKDFNLDLVSVSKK-DSGASPRITSISLCTPGCKTGAlmgCNMKTATCH 50
Cdd:TIGR03731  1 EKLFDFDLDVTAVSKSnDSDVDPRITSKSLCTPGCATGS---NTLFNSYCC 48
 
Name Accession Description Interval E-value
lantibio_gallid TIGR03731
lantibiotic, gallidermin/nisin family; Members of this family are lantibiotic precursors in ...
 1-50 9.13e-12

lantibiotic, gallidermin/nisin family; Members of this family are lantibiotic precursors in the family that includes gallidermin, nisin, mutacin, epidermin, and streptin. [Cellular processes, Toxin production and resistance]


Pssm-ID: 274753  Cd Length: 48  Bit Score: 53.21  E-value: 9.13e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504383303   1 MSTKDFNLDLVSVSKK-DSGASPRITSISLCTPGCKTGAlmgCNMKTATCH 50
Cdd:TIGR03731  1 EKLFDFDLDVTAVSKSnDSDVDPRITSKSLCTPGCATGS---NTLFNSYCC 48
Gallidermin pfam02052
Gallidermin;
6-39 1.11e-03

Gallidermin;


Pssm-ID: 110996  Cd Length: 52  Bit Score: 32.72  E-value: 1.11e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 504383303   6 FNLDLVSVSK--KDSGASPRITSISLCTPGC-KTGAL 39
Cdd:pfam02052 11 FALDVKVNAKesNDSGAEPRIASKFLCTPGCaKTGSF 47
 
Name Accession Description Interval E-value
lantibio_gallid TIGR03731
lantibiotic, gallidermin/nisin family; Members of this family are lantibiotic precursors in ...
 1-50 9.13e-12

lantibiotic, gallidermin/nisin family; Members of this family are lantibiotic precursors in the family that includes gallidermin, nisin, mutacin, epidermin, and streptin. [Cellular processes, Toxin production and resistance]


Pssm-ID: 274753  Cd Length: 48  Bit Score: 53.21  E-value: 9.13e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504383303   1 MSTKDFNLDLVSVSKK-DSGASPRITSISLCTPGCKTGAlmgCNMKTATCH 50
Cdd:TIGR03731  1 EKLFDFDLDVTAVSKSnDSDVDPRITSKSLCTPGCATGS---NTLFNSYCC 48
Gallidermin pfam02052
Gallidermin;
6-39 1.11e-03

Gallidermin;


Pssm-ID: 110996  Cd Length: 52  Bit Score: 32.72  E-value: 1.11e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 504383303   6 FNLDLVSVSK--KDSGASPRITSISLCTPGC-KTGAL 39
Cdd:pfam02052 11 FALDVKVNAKesNDSGAEPRIASKFLCTPGCaKTGSF 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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