NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|504359182|ref|WP_014546284|]
View 

fibrobacter succinogenes major paralogous domain-containing protein [Fibrobacter succinogenes]

Protein Classification

fibrobacter succinogenes major paralogous domain-containing protein( domain architecture ID 10020264)

fibrobacter succinogenes major paralogous domain-containing protein is a putative lipoprotein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 294-464 1.26e-82

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


:

Pssm-ID: 273995  Cd Length: 171  Bit Score: 258.00  E-value: 1.26e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  294 TMTDPRDGKTYRTVKIGDQVWMAENLNYETEKSYCYNDSVEYCAMYGRFYEWNAAM-RACPEGWHLPLLEEFKTLVDALG 372
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMdSICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  373 DSAMAGSKLKSTSGWLNDLNGTDDYGFTVLPIGGRSASGKYINKEWLADFWSSTESAVEFAYVMHVGANFNTAPLdMDEG 452
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 504359182  453 KYNAFSVRCLQG 464
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 495-665 1.27e-71

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


:

Pssm-ID: 273995  Cd Length: 171  Bit Score: 229.11  E-value: 1.27e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  495 KLTDERNGQEYKTVKIGKQVWMAENLNYETDESYCYNDSAEYCTKYGRLYTWSAALN-ACPTGWHLPSQNEGMTLYYSVG 573
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMDsICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  574 GRDTAAKMLKSVNGWNDDGAGTDSFGFSALPVGDRDEFNDYENEGRFAGFWTSTEVNERYAAHIHLFYMDDDAALsTTFN 653
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 504359182  654 KRYAYAVRCVKD 665
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
 
Name Accession Description Interval E-value
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 294-464 1.26e-82

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 258.00  E-value: 1.26e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  294 TMTDPRDGKTYRTVKIGDQVWMAENLNYETEKSYCYNDSVEYCAMYGRFYEWNAAM-RACPEGWHLPLLEEFKTLVDALG 372
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMdSICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  373 DSAMAGSKLKSTSGWLNDLNGTDDYGFTVLPIGGRSASGKYINKEWLADFWSSTESAVEFAYVMHVGANFNTAPLdMDEG 452
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 504359182  453 KYNAFSVRCLQG 464
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 495-665 1.27e-71

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 229.11  E-value: 1.27e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  495 KLTDERNGQEYKTVKIGKQVWMAENLNYETDESYCYNDSAEYCTKYGRLYTWSAALN-ACPTGWHLPSQNEGMTLYYSVG 573
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMDsICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  574 GRDTAAKMLKSVNGWNDDGAGTDSFGFSALPVGDRDEFNDYENEGRFAGFWTSTEVNERYAAHIHLFYMDDDAALsTTFN 653
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 504359182  654 KRYAYAVRCVKD 665
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 510-664 5.90e-44

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 155.30  E-value: 5.90e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  510 IGKQVWMAENLNYET------DESYCYNDSAEYCTKYGRLYTWSAALNA---CPTGWHLPSQNEGMTLYYSVGGRDTAAK 580
Cdd:pfam09603   1 IGGQYWMAENLRYATyrdgdpIETAKDANTDENCAGYGRLYNWEAAMDArglCPEGWHVPTDEEWKTLEAYLGGSEGAGS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  581 MLKSVNGWN--DDGAGTDSFGFSALPVGDRDE-FNDYENEGRFAGFWTSTEVNERYAAHI----HLFYMDDDAALSTTFN 653
Cdd:pfam09603  81 LLKATSGGPnlTVGNGTNETGFNALPAGYRDGdGSGFNADGKYAYFWTSTEDGSKGAEAGslgyRYFGLRRSVIRRGGAN 160

                         170
                  ....*....|.
gi 504359182  654 KRYAYAVRCVK 664
Cdd:pfam09603 161 KGKGLSVRCVK 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 309-463 2.99e-40

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 144.90  E-value: 2.99e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  309 IGDQVWMAENLNYETE------KSYCYNDSVEYCAMYGRFYEWNAAMRA---CPEGWHLPLLEEFKTLVDALGDSAMAGS 379
Cdd:pfam09603   1 IGGQYWMAENLRYATYrdgdpiETAKDANTDENCAGYGRLYNWEAAMDArglCPEGWHVPTDEEWKTLEAYLGGSEGAGS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  380 KLKSTSGW--LNDLNGTDDYGFTVLPIGGRSASG---KYINKEwlADFWSSTESAVEFAYVMHVGANFNTAPLDMD---- 450
Cdd:pfam09603  81 LLKATSGGpnLTVGNGTNETGFNALPAGYRDGDGsgfNADGKY--AYFWTSTEDGSKGAEAGSLGYRYFGLRRSVIrrgg 158

                         170
                  ....*....|...
gi 504359182  451 EGKYNAFSVRCLQ 463
Cdd:pfam09603 159 ANKGKGLSVRCVK 171
 
Name Accession Description Interval E-value
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 294-464 1.26e-82

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 258.00  E-value: 1.26e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  294 TMTDPRDGKTYRTVKIGDQVWMAENLNYETEKSYCYNDSVEYCAMYGRFYEWNAAM-RACPEGWHLPLLEEFKTLVDALG 372
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMdSICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  373 DSAMAGSKLKSTSGWLNDLNGTDDYGFTVLPIGGRSASGKYINKEWLADFWSSTESAVEFAYVMHVGANFNTAPLdMDEG 452
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 504359182  453 KYNAFSVRCLQG 464
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 495-665 1.27e-71

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 229.11  E-value: 1.27e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  495 KLTDERNGQEYKTVKIGKQVWMAENLNYETDESYCYNDSAEYCTKYGRLYTWSAALN-ACPTGWHLPSQNEGMTLYYSVG 573
Cdd:TIGR02145   1 TLVDSRDGQVYKTVKIGSQTWMAENLNYETEGSWCYEDDEENCAKYGRLYTWAAAMDsICPEGWHLPSTTEWNTLFDAVG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  574 GRDTAAKMLKSVNGWNDDGAGTDSFGFSALPVGDRDEFNDYENEGRFAGFWTSTEVNERYAAHIHLFYMDDDAALsTTFN 653
Cdd:TIGR02145  81 GKVNAGGKLKARSGWSKSGNGTDDYGFSALPAGYRFSDGEFSDDGEYAFFWSSDEENEDSAYYMYLRYSSDGIFL-IGED 159

                         170
                  ....*....|..
gi 504359182  654 KRYAYAVRCVKD 665
Cdd:TIGR02145 160 KDDGLSVRCVKD 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 510-664 5.90e-44

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 155.30  E-value: 5.90e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  510 IGKQVWMAENLNYET------DESYCYNDSAEYCTKYGRLYTWSAALNA---CPTGWHLPSQNEGMTLYYSVGGRDTAAK 580
Cdd:pfam09603   1 IGGQYWMAENLRYATyrdgdpIETAKDANTDENCAGYGRLYNWEAAMDArglCPEGWHVPTDEEWKTLEAYLGGSEGAGS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  581 MLKSVNGWN--DDGAGTDSFGFSALPVGDRDE-FNDYENEGRFAGFWTSTEVNERYAAHI----HLFYMDDDAALSTTFN 653
Cdd:pfam09603  81 LLKATSGGPnlTVGNGTNETGFNALPAGYRDGdGSGFNADGKYAYFWTSTEDGSKGAEAGslgyRYFGLRRSVIRRGGAN 160

                         170
                  ....*....|.
gi 504359182  654 KRYAYAVRCVK 664
Cdd:pfam09603 161 KGKGLSVRCVK 171
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 309-463 2.99e-40

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 144.90  E-value: 2.99e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  309 IGDQVWMAENLNYETE------KSYCYNDSVEYCAMYGRFYEWNAAMRA---CPEGWHLPLLEEFKTLVDALGDSAMAGS 379
Cdd:pfam09603   1 IGGQYWMAENLRYATYrdgdpiETAKDANTDENCAGYGRLYNWEAAMDArglCPEGWHVPTDEEWKTLEAYLGGSEGAGS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504359182  380 KLKSTSGW--LNDLNGTDDYGFTVLPIGGRSASG---KYINKEwlADFWSSTESAVEFAYVMHVGANFNTAPLDMD---- 450
Cdd:pfam09603  81 LLKATSGGpnLTVGNGTNETGFNALPAGYRDGDGsgfNADGKY--AYFWTSTEDGSKGAEAGSLGYRYFGLRRSVIrrgg 158

                         170
                  ....*....|...
gi 504359182  451 EGKYNAFSVRCLQ 463
Cdd:pfam09603 159 ANKGKGLSVRCVK 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH