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Conserved domains on  [gi|504309994|ref|WP_014497096|]
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MULTISPECIES: molybdopterin cofactor-binding domain-containing protein [Bradyrhizobium]

Protein Classification

xanthine dehydrogenase family protein molybdopterin-binding subunit( domain architecture ID 20364106)

xanthine dehydrogenase family protein molybdopterin-binding subunit is part of an oxidase/dehydrogenase complex acting on one or more of a variety of substrates

EC:  1.-.-.-
Gene Ontology:  GO:0043546|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
CoxL COG1529
Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; ...
190-725 7.93e-90

Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


:

Pssm-ID: 441138 [Multi-domain]  Cd Length: 741  Bit Score: 297.14  E-value: 7.93e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 190 KDPKDWTIAGKGLLRLDTADKTTGTMLYGIDVKLPGMLNAAIKDCPVFGGKLKSYD--EAK-------------VTGMKG 254
Cdd:COG1529    2 SDPADFRIIGKPVPRVDGPAKVTGRARYTDDIRLPGMLYAAVVRSPHAHARIKSIDtsAALalpgvvavltgedLPGLKF 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 255 VKKVVKVGDTA-------------VAVVADTWWHAKTALEALPIVWDEGEnAKVSS----ASIAKWLAEGLDDTQPAYVG 317
Cdd:COG1529   82 GLPGPDPDQPPladdkvryvgepvAAVVAETREAARDAAELIKVEYEPLP-AVVDPeaalAPGAPLVHEELPGNVAAEWR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 318 NKNGDVKAAIAGAAKKVEAVYNYPYQNHATMEPMNATALYTAD-KCEVWCGTQNGEAAFAATLEASGLPAEKCDVHKVMP 396
Cdd:COG1529  161 GERGDVDAAFAEADVVVEATYTTPRLAHAPMEPRAAVAEWDGDgRLTVWASTQGPHLVRRALARALGLPPEKVRVIAPDV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 397 GGGFGRRGQT-DYVRQAVMIAKQMpGTPIKLLWSREEDMAHGRYHPITQCKMTGAFDANNNLIALHYRLsgqsilfslrp 475
Cdd:COG1529  241 GGGFGGKLDVyPEEVLAALAARKL-GRPVKLVLTREEDFLADTHRHATVQRVRLGADKDGKITALRHDV----------- 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 476 eALQNGMDPAAFQGVAQSG--EAAFGYSVPNLLIE-HAMRNPHVPPGFWRGVNVNHNAIYMECFMDELAQAAGQDPLEFR 552
Cdd:COG1529  309 -VADTGAYASFGEAVLPLGatMATGPYAIPNVRVEaRAVYTNTPPTGAYRGPGRPQAAFALESAMDELAEELGMDPVELR 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 553 RKLMG------------NHPKHLAVLNAVAEKIGWDKPAPQ------GVYRGI--------------------------- 587
Cdd:COG1529  388 LRNLIrpgdfpptgqpyDSGRLAECLEKAAEAFGWGERRARpaearaGKLRGIgvaayiegsggggdpesarvrlnpdgs 467
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 588 ----------------------AQVMG----------------------YGS---------------------------- 595
Cdd:COG1529  468 vtvytgatdigqghetvlaqiaAEELGvppedvrvvlgdtdltpygggtGGSrstavggsavrkaaeklrekllelaahl 547
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 596 ---------------------------------------------------YVAGAAEISV-TDGNKIKVHRIVASTDPG 623
Cdd:COG1529  548 lgadpedlefedgrvrvpgrsvslaelaaaayyggleatgtydpptyptysFGAHVAEVEVdPETGEVRVLRVVAVHDCG 627
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 624 YVVNPAQVERQIAGSFVYGLSALFYGGCTVK-DGKIEQTNFDTYNSMRINEMPKVESVMVPS---GGFWG--GVGEPTIG 697
Cdd:COG1529  628 RVINPLLVEGQVEGGVVQGIGQALYEELVYDeDGQLLNANFADYLVPRAADVPEIEVIFVETpdpTNPLGakGVGEPGTI 707
                        730       740
                 ....*....|....*....|....*...
gi 504309994 698 VAAPAVLNAYFAATGKRIRSVPLRDQNI 725
Cdd:COG1529  708 GVAPAIANAVYDATGVRIRDLPITPEKV 735
MoCoBD_2 super family cl48421
Molybdopterin cofactor-binding domain;
50-200 5.28e-14

Molybdopterin cofactor-binding domain;


The actual alignment was detected with superfamily member pfam20256:

Pssm-ID: 466407 [Multi-domain]  Cd Length: 282  Bit Score: 72.96  E-value: 5.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994   50 AWVVVRPDDTVVIRIARSEMGQGSLTGLAQLVAEELECDWSKITTEYP-TpgqsvarKRVWGDFSTGGSRGIRSSQDYVR 128
Cdd:pfam20256  48 ALVRLNPDGSVTVYTGGTEMGQGLETKLAQIAAEALGIPPEDVRVVEGdT-------DTVPNGGGTGASRSTDVGGNAVL 120
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504309994  129 KGGATARVMLIEAAANEWKVPASECTVANGVITHKASGKTTTYGKVAEAAAKLTPP--ADVKLKDPKDWTIAGK 200
Cdd:pfam20256 121 LAAEKLRERLLKIAAHLLEASPEDLEFEDGKVYVKGDPRSVTFAELAAAAYGEGVGlsATGFYTPPDDETGQGP 194
 
Name Accession Description Interval E-value
CoxL COG1529
Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; ...
190-725 7.93e-90

Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441138 [Multi-domain]  Cd Length: 741  Bit Score: 297.14  E-value: 7.93e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 190 KDPKDWTIAGKGLLRLDTADKTTGTMLYGIDVKLPGMLNAAIKDCPVFGGKLKSYD--EAK-------------VTGMKG 254
Cdd:COG1529    2 SDPADFRIIGKPVPRVDGPAKVTGRARYTDDIRLPGMLYAAVVRSPHAHARIKSIDtsAALalpgvvavltgedLPGLKF 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 255 VKKVVKVGDTA-------------VAVVADTWWHAKTALEALPIVWDEGEnAKVSS----ASIAKWLAEGLDDTQPAYVG 317
Cdd:COG1529   82 GLPGPDPDQPPladdkvryvgepvAAVVAETREAARDAAELIKVEYEPLP-AVVDPeaalAPGAPLVHEELPGNVAAEWR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 318 NKNGDVKAAIAGAAKKVEAVYNYPYQNHATMEPMNATALYTAD-KCEVWCGTQNGEAAFAATLEASGLPAEKCDVHKVMP 396
Cdd:COG1529  161 GERGDVDAAFAEADVVVEATYTTPRLAHAPMEPRAAVAEWDGDgRLTVWASTQGPHLVRRALARALGLPPEKVRVIAPDV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 397 GGGFGRRGQT-DYVRQAVMIAKQMpGTPIKLLWSREEDMAHGRYHPITQCKMTGAFDANNNLIALHYRLsgqsilfslrp 475
Cdd:COG1529  241 GGGFGGKLDVyPEEVLAALAARKL-GRPVKLVLTREEDFLADTHRHATVQRVRLGADKDGKITALRHDV----------- 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 476 eALQNGMDPAAFQGVAQSG--EAAFGYSVPNLLIE-HAMRNPHVPPGFWRGVNVNHNAIYMECFMDELAQAAGQDPLEFR 552
Cdd:COG1529  309 -VADTGAYASFGEAVLPLGatMATGPYAIPNVRVEaRAVYTNTPPTGAYRGPGRPQAAFALESAMDELAEELGMDPVELR 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 553 RKLMG------------NHPKHLAVLNAVAEKIGWDKPAPQ------GVYRGI--------------------------- 587
Cdd:COG1529  388 LRNLIrpgdfpptgqpyDSGRLAECLEKAAEAFGWGERRARpaearaGKLRGIgvaayiegsggggdpesarvrlnpdgs 467
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 588 ----------------------AQVMG----------------------YGS---------------------------- 595
Cdd:COG1529  468 vtvytgatdigqghetvlaqiaAEELGvppedvrvvlgdtdltpygggtGGSrstavggsavrkaaeklrekllelaahl 547
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 596 ---------------------------------------------------YVAGAAEISV-TDGNKIKVHRIVASTDPG 623
Cdd:COG1529  548 lgadpedlefedgrvrvpgrsvslaelaaaayyggleatgtydpptyptysFGAHVAEVEVdPETGEVRVLRVVAVHDCG 627
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 624 YVVNPAQVERQIAGSFVYGLSALFYGGCTVK-DGKIEQTNFDTYNSMRINEMPKVESVMVPS---GGFWG--GVGEPTIG 697
Cdd:COG1529  628 RVINPLLVEGQVEGGVVQGIGQALYEELVYDeDGQLLNANFADYLVPRAADVPEIEVIFVETpdpTNPLGakGVGEPGTI 707
                        730       740
                 ....*....|....*....|....*...
gi 504309994 698 VAAPAVLNAYFAATGKRIRSVPLRDQNI 725
Cdd:COG1529  708 GVAPAIANAVYDATGVRIRDLPITPEKV 735
MoCoBD_1 pfam02738
Molybdopterin cofactor-binding domain;
321-554 3.84e-19

Molybdopterin cofactor-binding domain;


Pssm-ID: 460671 [Multi-domain]  Cd Length: 244  Bit Score: 87.51  E-value: 3.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  321 GDVKAAIAGAAKKVEAVYNYPYQNHATMEPMNATALYTA--DKCEVWCGTQNGE---AAFAATLeasGLPAEKcdVHKVM 395
Cdd:pfam02738  16 GDVEAAFAEADHVVEGEYRTGRQEHFYMETRAALAVPDDedGRLTVYSSTQGPHlvrRLVARVL---GIPENK--VRVIV 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  396 P--GGGFGrrGQTDYVRQAVMI---AKQMpGTPIKLLWSREEDM-AHGRYHPiTQCKMTGAFDANNNLIALHYRL---SG 466
Cdd:pfam02738  91 PrvGGGFG--GKTQSYPEEALAalaARKT-GRPVKWVLDREEDMlATGHRHP-FLIKYKVGADKDGKILALDVDLyadGG 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  467 QSILFSlrPEALQNGMdpAAFQGVaqsgeaafgYSVPNLLIE-HAMRNPHVPPGFWRGVNVNHNAIYMECFMDELAQAAG 545
Cdd:pfam02738 167 AYADLS--PAVPERAL--SHLDGP---------YKIPNVRVDgRAVYTNTPPNGAFRGFGRPQGMFALERLMDELAEELG 233

                  ....*....
gi 504309994  546 QDPLEFRRK 554
Cdd:pfam02738 234 MDPLELRRR 242
MoCoBD_2 pfam20256
Molybdopterin cofactor-binding domain;
50-200 5.28e-14

Molybdopterin cofactor-binding domain;


Pssm-ID: 466407 [Multi-domain]  Cd Length: 282  Bit Score: 72.96  E-value: 5.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994   50 AWVVVRPDDTVVIRIARSEMGQGSLTGLAQLVAEELECDWSKITTEYP-TpgqsvarKRVWGDFSTGGSRGIRSSQDYVR 128
Cdd:pfam20256  48 ALVRLNPDGSVTVYTGGTEMGQGLETKLAQIAAEALGIPPEDVRVVEGdT-------DTVPNGGGTGASRSTDVGGNAVL 120
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504309994  129 KGGATARVMLIEAAANEWKVPASECTVANGVITHKASGKTTTYGKVAEAAAKLTPP--ADVKLKDPKDWTIAGK 200
Cdd:pfam20256 121 LAAEKLRERLLKIAAHLLEASPEDLEFEDGKVYVKGDPRSVTFAELAAAAYGEGVGlsATGFYTPPDDETGQGP 194
CoxL COG1529
Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; ...
50-178 1.41e-13

Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441138 [Multi-domain]  Cd Length: 741  Bit Score: 74.50  E-value: 1.41e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  50 AWVVVRPDDTVVIRIARSEMGQGSLTGLAQLVAEELECDWSKITTEYP-TpgqsvarKRVWGDFSTGGSRGIRSSQDYVR 128
Cdd:COG1529  458 ARVRLNPDGSVTVYTGATDIGQGHETVLAQIAAEELGVPPEDVRVVLGdT-------DLTPYGGGTGGSRSTAVGGSAVR 530
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 504309994 129 KGGATARVMLIEAAANEWKVPASECTVANGVIThkASGKTTTYGKVAEAA 178
Cdd:COG1529  531 KAAEKLREKLLELAAHLLGADPEDLEFEDGRVR--VPGRSVSLAELAAAA 578
PRK09970 PRK09970
xanthine dehydrogenase subunit XdhA; Provisional
196-554 8.15e-12

xanthine dehydrogenase subunit XdhA; Provisional


Pssm-ID: 236637 [Multi-domain]  Cd Length: 759  Bit Score: 68.57  E-value: 8.15e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 196 TIAGKGLLRLDTADKTTGTMLYGIDVKLPGMLNAAIKDCPVFGGKLKSYDEAKVTGMKGVKKVVKVGD-------TA--- 265
Cdd:PRK09970   1 MAIGKSIMRVDAIAKVTGRAKYTDDYVMAGMLYAKYVRSPIAHGKVKSIDTEEARSLPGVEAVFTWEDvpdipfpTAghp 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 266 ---------------------------VAVVADTWWHAKTALEALPIVWDEGENAKVSSASIAkwlaeglDDTQPAYVGN 318
Cdd:PRK09970  81 wsldpnhrdiadralltrhvrhhgdavAAVVARDELTAEKALKLIKVEYEELPVITDPEAALA-------EGAPPIHNGR 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 319 KN---------GDVKAAIAGAAKKVEAVYNYPYQNHATMEPMNATA-LYTADKCEVWCGTQNGEAAFAATLEASGLPAEK 388
Cdd:PRK09970 154 GNllkqstmstGNVQQTIKAADYQVQGHYETPIVQHCHMENVTSYAyMEDDGRITIVSSTQIPHIVRRVVGQALGIPWGK 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 389 CDVHKVMPGGGFGRRGQTDYVRQAVMIAKQMPGTPIKLLWSREEDMAHGRY-HPITqCKMTGAFDANNNLIALHYrlsgq 467
Cdd:PRK09970 234 VRVIKPYVGGGFGNKQDVLEEPLAAFLTSKVGGRPVKVSLSREECFLATRTrHAFT-IDIKMGVNRDGTLKGYSL----- 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 468 silfslrpEALQNGMDPAAF-QGVAQSGEAAFGYSVP-------------NLLIEHAMRNPHVPpgfwrgvnvnhNAIY- 532
Cdd:PRK09970 308 --------DVLSNTGAYASHgHSIASAGGNKVAYLYPrcaykyssktvytNLPSAGAMRGYGAP-----------QVVFa 368
                        410       420
                 ....*....|....*....|..
gi 504309994 533 MECFMDELAQAAGQDPLEFRRK 554
Cdd:PRK09970 369 VESMLDDAATALGIDPVEFRLR 390
Ald_Xan_dh_C smart01008
Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Aldehyde oxidase catalyses ...
212-291 3.27e-11

Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Aldehyde oxidase catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.


Pssm-ID: 214971 [Multi-domain]  Cd Length: 107  Bit Score: 60.61  E-value: 3.27e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994   212 TGTMLYGIDVKLPGMLNAAIKDCPVFGGKLKSYDEAKVTGM--------------KGVKKVVKVGDTA------------ 265
Cdd:smart01008   1 TGEARYGDDIRLPGMLHAAVVRSPVAHARIKSIDTSAARAMpgvvavltakdvpgLNDFGPLGPDEPVladdkvryvgqp 80
                           90       100
                   ....*....|....*....|....*..
gi 504309994   266 -VAVVADTWWHAKTALEALPIVWDEGE 291
Cdd:smart01008  81 vAAVVAETEEAARDAAEAVKVEYEELP 107
 
Name Accession Description Interval E-value
CoxL COG1529
Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; ...
190-725 7.93e-90

Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441138 [Multi-domain]  Cd Length: 741  Bit Score: 297.14  E-value: 7.93e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 190 KDPKDWTIAGKGLLRLDTADKTTGTMLYGIDVKLPGMLNAAIKDCPVFGGKLKSYD--EAK-------------VTGMKG 254
Cdd:COG1529    2 SDPADFRIIGKPVPRVDGPAKVTGRARYTDDIRLPGMLYAAVVRSPHAHARIKSIDtsAALalpgvvavltgedLPGLKF 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 255 VKKVVKVGDTA-------------VAVVADTWWHAKTALEALPIVWDEGEnAKVSS----ASIAKWLAEGLDDTQPAYVG 317
Cdd:COG1529   82 GLPGPDPDQPPladdkvryvgepvAAVVAETREAARDAAELIKVEYEPLP-AVVDPeaalAPGAPLVHEELPGNVAAEWR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 318 NKNGDVKAAIAGAAKKVEAVYNYPYQNHATMEPMNATALYTAD-KCEVWCGTQNGEAAFAATLEASGLPAEKCDVHKVMP 396
Cdd:COG1529  161 GERGDVDAAFAEADVVVEATYTTPRLAHAPMEPRAAVAEWDGDgRLTVWASTQGPHLVRRALARALGLPPEKVRVIAPDV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 397 GGGFGRRGQT-DYVRQAVMIAKQMpGTPIKLLWSREEDMAHGRYHPITQCKMTGAFDANNNLIALHYRLsgqsilfslrp 475
Cdd:COG1529  241 GGGFGGKLDVyPEEVLAALAARKL-GRPVKLVLTREEDFLADTHRHATVQRVRLGADKDGKITALRHDV----------- 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 476 eALQNGMDPAAFQGVAQSG--EAAFGYSVPNLLIE-HAMRNPHVPPGFWRGVNVNHNAIYMECFMDELAQAAGQDPLEFR 552
Cdd:COG1529  309 -VADTGAYASFGEAVLPLGatMATGPYAIPNVRVEaRAVYTNTPPTGAYRGPGRPQAAFALESAMDELAEELGMDPVELR 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 553 RKLMG------------NHPKHLAVLNAVAEKIGWDKPAPQ------GVYRGI--------------------------- 587
Cdd:COG1529  388 LRNLIrpgdfpptgqpyDSGRLAECLEKAAEAFGWGERRARpaearaGKLRGIgvaayiegsggggdpesarvrlnpdgs 467
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 588 ----------------------AQVMG----------------------YGS---------------------------- 595
Cdd:COG1529  468 vtvytgatdigqghetvlaqiaAEELGvppedvrvvlgdtdltpygggtGGSrstavggsavrkaaeklrekllelaahl 547
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 596 ---------------------------------------------------YVAGAAEISV-TDGNKIKVHRIVASTDPG 623
Cdd:COG1529  548 lgadpedlefedgrvrvpgrsvslaelaaaayyggleatgtydpptyptysFGAHVAEVEVdPETGEVRVLRVVAVHDCG 627
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 624 YVVNPAQVERQIAGSFVYGLSALFYGGCTVK-DGKIEQTNFDTYNSMRINEMPKVESVMVPS---GGFWG--GVGEPTIG 697
Cdd:COG1529  628 RVINPLLVEGQVEGGVVQGIGQALYEELVYDeDGQLLNANFADYLVPRAADVPEIEVIFVETpdpTNPLGakGVGEPGTI 707
                        730       740
                 ....*....|....*....|....*...
gi 504309994 698 VAAPAVLNAYFAATGKRIRSVPLRDQNI 725
Cdd:COG1529  708 GVAPAIANAVYDATGVRIRDLPITPEKV 735
MoCoBD_1 pfam02738
Molybdopterin cofactor-binding domain;
321-554 3.84e-19

Molybdopterin cofactor-binding domain;


Pssm-ID: 460671 [Multi-domain]  Cd Length: 244  Bit Score: 87.51  E-value: 3.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  321 GDVKAAIAGAAKKVEAVYNYPYQNHATMEPMNATALYTA--DKCEVWCGTQNGE---AAFAATLeasGLPAEKcdVHKVM 395
Cdd:pfam02738  16 GDVEAAFAEADHVVEGEYRTGRQEHFYMETRAALAVPDDedGRLTVYSSTQGPHlvrRLVARVL---GIPENK--VRVIV 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  396 P--GGGFGrrGQTDYVRQAVMI---AKQMpGTPIKLLWSREEDM-AHGRYHPiTQCKMTGAFDANNNLIALHYRL---SG 466
Cdd:pfam02738  91 PrvGGGFG--GKTQSYPEEALAalaARKT-GRPVKWVLDREEDMlATGHRHP-FLIKYKVGADKDGKILALDVDLyadGG 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  467 QSILFSlrPEALQNGMdpAAFQGVaqsgeaafgYSVPNLLIE-HAMRNPHVPPGFWRGVNVNHNAIYMECFMDELAQAAG 545
Cdd:pfam02738 167 AYADLS--PAVPERAL--SHLDGP---------YKIPNVRVDgRAVYTNTPPNGAFRGFGRPQGMFALERLMDELAEELG 233

                  ....*....
gi 504309994  546 QDPLEFRRK 554
Cdd:pfam02738 234 MDPLELRRR 242
MoCoBD_2 pfam20256
Molybdopterin cofactor-binding domain;
50-200 5.28e-14

Molybdopterin cofactor-binding domain;


Pssm-ID: 466407 [Multi-domain]  Cd Length: 282  Bit Score: 72.96  E-value: 5.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994   50 AWVVVRPDDTVVIRIARSEMGQGSLTGLAQLVAEELECDWSKITTEYP-TpgqsvarKRVWGDFSTGGSRGIRSSQDYVR 128
Cdd:pfam20256  48 ALVRLNPDGSVTVYTGGTEMGQGLETKLAQIAAEALGIPPEDVRVVEGdT-------DTVPNGGGTGASRSTDVGGNAVL 120
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504309994  129 KGGATARVMLIEAAANEWKVPASECTVANGVITHKASGKTTTYGKVAEAAAKLTPP--ADVKLKDPKDWTIAGK 200
Cdd:pfam20256 121 LAAEKLRERLLKIAAHLLEASPEDLEFEDGKVYVKGDPRSVTFAELAAAAYGEGVGlsATGFYTPPDDETGQGP 194
CoxL COG1529
Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; ...
50-178 1.41e-13

Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441138 [Multi-domain]  Cd Length: 741  Bit Score: 74.50  E-value: 1.41e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  50 AWVVVRPDDTVVIRIARSEMGQGSLTGLAQLVAEELECDWSKITTEYP-TpgqsvarKRVWGDFSTGGSRGIRSSQDYVR 128
Cdd:COG1529  458 ARVRLNPDGSVTVYTGATDIGQGHETVLAQIAAEELGVPPEDVRVVLGdT-------DLTPYGGGTGGSRSTAVGGSAVR 530
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 504309994 129 KGGATARVMLIEAAANEWKVPASECTVANGVIThkASGKTTTYGKVAEAA 178
Cdd:COG1529  531 KAAEKLREKLLELAAHLLGADPEDLEFEDGRVR--VPGRSVSLAELAAAA 578
PRK09970 PRK09970
xanthine dehydrogenase subunit XdhA; Provisional
196-554 8.15e-12

xanthine dehydrogenase subunit XdhA; Provisional


Pssm-ID: 236637 [Multi-domain]  Cd Length: 759  Bit Score: 68.57  E-value: 8.15e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 196 TIAGKGLLRLDTADKTTGTMLYGIDVKLPGMLNAAIKDCPVFGGKLKSYDEAKVTGMKGVKKVVKVGD-------TA--- 265
Cdd:PRK09970   1 MAIGKSIMRVDAIAKVTGRAKYTDDYVMAGMLYAKYVRSPIAHGKVKSIDTEEARSLPGVEAVFTWEDvpdipfpTAghp 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 266 ---------------------------VAVVADTWWHAKTALEALPIVWDEGENAKVSSASIAkwlaeglDDTQPAYVGN 318
Cdd:PRK09970  81 wsldpnhrdiadralltrhvrhhgdavAAVVARDELTAEKALKLIKVEYEELPVITDPEAALA-------EGAPPIHNGR 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 319 KN---------GDVKAAIAGAAKKVEAVYNYPYQNHATMEPMNATA-LYTADKCEVWCGTQNGEAAFAATLEASGLPAEK 388
Cdd:PRK09970 154 GNllkqstmstGNVQQTIKAADYQVQGHYETPIVQHCHMENVTSYAyMEDDGRITIVSSTQIPHIVRRVVGQALGIPWGK 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 389 CDVHKVMPGGGFGRRGQTDYVRQAVMIAKQMPGTPIKLLWSREEDMAHGRY-HPITqCKMTGAFDANNNLIALHYrlsgq 467
Cdd:PRK09970 234 VRVIKPYVGGGFGNKQDVLEEPLAAFLTSKVGGRPVKVSLSREECFLATRTrHAFT-IDIKMGVNRDGTLKGYSL----- 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994 468 silfslrpEALQNGMDPAAF-QGVAQSGEAAFGYSVP-------------NLLIEHAMRNPHVPpgfwrgvnvnhNAIY- 532
Cdd:PRK09970 308 --------DVLSNTGAYASHgHSIASAGGNKVAYLYPrcaykyssktvytNLPSAGAMRGYGAP-----------QVVFa 368
                        410       420
                 ....*....|....*....|..
gi 504309994 533 MECFMDELAQAAGQDPLEFRRK 554
Cdd:PRK09970 369 VESMLDDAATALGIDPVEFRLR 390
Ald_Xan_dh_C smart01008
Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Aldehyde oxidase catalyses ...
212-291 3.27e-11

Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Aldehyde oxidase catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.


Pssm-ID: 214971 [Multi-domain]  Cd Length: 107  Bit Score: 60.61  E-value: 3.27e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994   212 TGTMLYGIDVKLPGMLNAAIKDCPVFGGKLKSYDEAKVTGM--------------KGVKKVVKVGDTA------------ 265
Cdd:smart01008   1 TGEARYGDDIRLPGMLHAAVVRSPVAHARIKSIDTSAARAMpgvvavltakdvpgLNDFGPLGPDEPVladdkvryvgqp 80
                           90       100
                   ....*....|....*....|....*..
gi 504309994   266 -VAVVADTWWHAKTALEALPIVWDEGE 291
Cdd:smart01008  81 vAAVVAETEEAARDAAEAVKVEYEELP 107
MoCoBD_2 pfam20256
Molybdopterin cofactor-binding domain;
593-675 1.87e-06

Molybdopterin cofactor-binding domain;


Pssm-ID: 466407 [Multi-domain]  Cd Length: 282  Bit Score: 50.23  E-value: 1.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  593 YGSYVAGAA----EISVTDGnKIKVHRIVASTDPGYVVNPAQVERQIAGSFVYGLSALFYGGCTV-KDGKIEQTNFDTYN 667
Cdd:pfam20256 196 FAYYPYGAHaaevEVDPETG-EVRVLRYVAVHDCGRVINPAIVEGQIEGGFVQGIGLALMEELVYdEDGQLLTASLMDYK 274

                  ....*...
gi 504309994  668 SMRINEMP 675
Cdd:pfam20256 275 IPTAADIP 282
PLN02906 PLN02906
xanthine dehydrogenase
343-553 9.50e-03

xanthine dehydrogenase


Pssm-ID: 215491 [Multi-domain]  Cd Length: 1319  Bit Score: 39.30  E-value: 9.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  343 QNHATMEPMNATALYTADKCEV--WCGTQNGEAAFAATLEASGLPAEKCDVHKVMPGGGFG-RRGQTDYVRQAVMIAKQM 419
Cdd:PLN02906  735 QEHFYLEPNSSLVWTSDSGNEVhmISSTQAPQKHQKYVAHVLGLPMSKVVCKTKRIGGGFGgKETRSAFIAAAAAVPAYL 814
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504309994  420 PGTPIKLLWSREEDMA-----H---GRYHPitqckmtgAFDANNNLIALH---YRLSGQSILFSLrpealqNGMDPAAFQ 488
Cdd:PLN02906  815 LNRPVKLTLDRDVDMMitgqrHaflGKYKV--------GFTNEGKILALDleiYNNGGNSLDLSG------AVLERAMFH 880
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504309994  489 --GVaqsgeaafgYSVPNLLIEHAMRNPHVPP--GFwRGVNVNHNAIYMECFMDELAQAAGQDPLEFRR 553
Cdd:PLN02906  881 sdNV---------YEIPNVRIVGNVCFTNFPSntAF-RGFGGPQGMLITENWIQRIAVELNKSPEEIRE 939
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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