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Conserved domains on  [gi|504292610|ref|WP_014479712|]
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MULTISPECIES: YugN family protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YugN super family cl07461
YugN-like family; This family of proteins related to B. subtilis YugN are functionally ...
 6-89 5.37e-10

YugN-like family; This family of proteins related to B. subtilis YugN are functionally uncharacterized.


The actual alignment was detected with superfamily member pfam08868:

Pssm-ID: 370164  Cd Length: 130  Bit Score: 53.02  E-value: 5.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292610    6 ESGLEGVKAELSWLDDLMESKGLIRAGQWDYERVTYDKKFSTIEGTFYLRIQGIAAEGDVGSGRAVIQLMSPLLGKHYYP 85
Cdd:pfam08868   3 PSRLEGKEFALYKLEQKLKPLGYTLGGNWDYDHGYFDYKLDDEDGYQFLRLPFQAVDGELDSPGATVRLGRPFLLRHVYQ 82


                  ....
gi 504292610   86 HGVE 89
Cdd:pfam08868  83 EGLD 86
 
Name Accession Description Interval E-value
YugN pfam08868
YugN-like family; This family of proteins related to B. subtilis YugN are functionally ...
 6-89 5.37e-10

YugN-like family; This family of proteins related to B. subtilis YugN are functionally uncharacterized.


Pssm-ID: 370164  Cd Length: 130  Bit Score: 53.02  E-value: 5.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292610    6 ESGLEGVKAELSWLDDLMESKGLIRAGQWDYERVTYDKKFSTIEGTFYLRIQGIAAEGDVGSGRAVIQLMSPLLGKHYYP 85
Cdd:pfam08868   3 PSRLEGKEFALYKLEQKLKPLGYTLGGNWDYDHGYFDYKLDDEDGYQFLRLPFQAVDGELDSPGATVRLGRPFLLRHVYQ 82


                  ....
gi 504292610   86 HGVE 89
Cdd:pfam08868  83 EGLD 86
 
Name Accession Description Interval E-value
YugN pfam08868
YugN-like family; This family of proteins related to B. subtilis YugN are functionally ...
 6-89 5.37e-10

YugN-like family; This family of proteins related to B. subtilis YugN are functionally uncharacterized.


Pssm-ID: 370164  Cd Length: 130  Bit Score: 53.02  E-value: 5.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292610    6 ESGLEGVKAELSWLDDLMESKGLIRAGQWDYERVTYDKKFSTIEGTFYLRIQGIAAEGDVGSGRAVIQLMSPLLGKHYYP 85
Cdd:pfam08868   3 PSRLEGKEFALYKLEQKLKPLGYTLGGNWDYDHGYFDYKLDDEDGYQFLRLPFQAVDGELDSPGATVRLGRPFLLRHVYQ 82


                  ....
gi 504292610   86 HGVE 89
Cdd:pfam08868  83 EGLD 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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