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Conserved domains on  [gi|504292601|ref|WP_014479703|]
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MULTISPECIES: anti-SigP sigma factor SigQ [Bacillus]

Protein Classification

anti-sigma factor family protein( domain architecture ID 11475862)

anti-sigma factor family protein may contain an N-terminal zinc-finger domain and belong to the zinc-associated anti-sigma factor (ZAS) family such as Bacillus subtilis anti-sigma-W factor RsiW and Mycobacterium tuberculosis anti-sigma-L factor RslA

Gene Ontology:  GO:0046872|GO:0016020
PubMed:  28319136

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
1-91 2.28e-06

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


:

Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 43.30  E-value: 2.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292601   1 MTCFLVRDLLPLYLEGDCKRETEHVIEAHLKMCSSCRDMYDTMaepfeLESEQAVEEAYLPEEEL--RFKQRYYGLLIMK 78
Cdd:COG5662    1 MTCDDVEELLHAYLDGELSPEERAEVEAHLATCPACAARLAEL-----RRLRAALRAALAPDEPVpaRLRARVMARLPRR 75

                         90
                 ....*....|...
gi 504292601  79 AACWFGAAVAMML 91
Cdd:COG5662   76 RRRRWRAVAAADL 88
 
Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
1-91 2.28e-06

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 43.30  E-value: 2.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292601   1 MTCFLVRDLLPLYLEGDCKRETEHVIEAHLKMCSSCRDMYDTMaepfeLESEQAVEEAYLPEEEL--RFKQRYYGLLIMK 78
Cdd:COG5662    1 MTCDDVEELLHAYLDGELSPEERAEVEAHLATCPACAARLAEL-----RRLRAALRAALAPDEPVpaRLRARVMARLPRR 75

                         90
                 ....*....|...
gi 504292601  79 AACWFGAAVAMML 91
Cdd:COG5662   76 RRRRWRAVAAADL 88
zf-HC2 pfam13490
Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.
 3-37 3.83e-06

Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.


Pssm-ID: 463895 [Multi-domain]  Cd Length: 35  Bit Score: 39.84  E-value: 3.83e-06
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 504292601   3 CFLVRDLLPLYLEGDCKRETEHVIEAHLKMCSSCR 37
Cdd:pfam13490  1 CEEVRELLSAYLDGELSPEERARVEAHLAGCPACR 35
 
Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
1-91 2.28e-06

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 43.30  E-value: 2.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292601   1 MTCFLVRDLLPLYLEGDCKRETEHVIEAHLKMCSSCRDMYDTMaepfeLESEQAVEEAYLPEEEL--RFKQRYYGLLIMK 78
Cdd:COG5662    1 MTCDDVEELLHAYLDGELSPEERAEVEAHLATCPACAARLAEL-----RRLRAALRAALAPDEPVpaRLRARVMARLPRR 75

                         90
                 ....*....|...
gi 504292601  79 AACWFGAAVAMML 91
Cdd:COG5662   76 RRRRWRAVAAADL 88
zf-HC2 pfam13490
Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.
 3-37 3.83e-06

Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.


Pssm-ID: 463895 [Multi-domain]  Cd Length: 35  Bit Score: 39.84  E-value: 3.83e-06
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 504292601   3 CFLVRDLLPLYLEGDCKRETEHVIEAHLKMCSSCR 37
Cdd:pfam13490  1 CEEVRELLSAYLDGELSPEERARVEAHLAGCPACR 35
YlaD COG5660
Anti-sigma-YlaC factor YlaD, contains Zn-finger domain [Signal transduction mechanisms];
1-45 3.06e-03

Anti-sigma-YlaC factor YlaD, contains Zn-finger domain [Signal transduction mechanisms];


Pssm-ID: 444379 [Multi-domain]  Cd Length: 219  Bit Score: 34.75  E-value: 3.06e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 504292601   1 MTCFLVRDLLPLYLEGDCKRETEHVIEAHLKMCSSCRDMYDTMAE 45
Cdd:COG5660    1 MDCETCREALSARLDGELEPVPAAEVDAHLAGCPACRAWLERAAA 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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