NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|503748516|ref|WP_013982592|]
View 

flagellar filament capping protein FliD [Stutzerimonas stutzeri]

Protein Classification

flagellar filament capping protein FliD( domain architecture ID 11442561)

flagellar filament capping protein FliD is required for the morphogenesis and elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament

Gene Ontology:  GO:0007155|GO:0009288
PubMed:  27664419

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-467 2.14e-135

Flagellar capping protein FliD [Cell motility];


:

Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 398.06  E-value: 2.14e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   1 MAGVT--GIGSGIDIDSIVKSMVAAERAPKEsQLANLEMKTTTQITAIGALKSAISDFQTALRGLNKPELFQARSATSSK 78
Cdd:COG1345    1 MASISslGLGSGLDTDSLVSQLMAAERAPLT-RLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKATSSN 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  79 SDLVGVTAGTTAGAGSYQVEVKELATSSKVALAAVKSTAEAparFGSGSLEIKLGNEGSFSITVDeSNNTLAGIRDAINK 158
Cdd:COG1345   80 ESAVTATATSGAAAGSYSIEVTQLAQAQSLASAAFASATTT---LGTGTLTITVGDGKTVTITID-ANDTLADIADAINA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 159 QGAekGVTATIVTDDqGARLVLSSSKTGADKDITVGASpsgvageGQQSLS-VLAFdgvepDDDAGPRILAQAQSSVITV 237
Cdd:COG1345  156 AGA--GVTASIVNDG-SYRLVLTSKKTGAANAITVSVS-------GDGALSaLLGF-----DPASGMTETQAAQDAKLTV 220

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 238 DGLTVTSETNKVEGAIEGVTLDLKAKTakDEPLTINVAEDKAGVKKQIQSFVDSYNKLIGVINEQTKVTSvgDGKAPVTG 317
Cdd:COG1345  221 NGITITSSSNTFTDAIDGVTLTLKKVT--GGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTK--DEETAKAG 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 318 ALVGDATARTLLGTIRSELTN-VQGEGALRALADLGITTQKDGTLKIDDDKLSKVMDSNFTELPALFTG---EKGIATRL 393
Cdd:COG1345  297 ALLGDSTLRSLQSQLRSALSSpVSGGGSYKSLSDIGITTDKDGKLELDETKLDKALAEDPDAVAKLFTGdgkTTGIATRL 376

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503748516 394 DEKLKPYTETGGILEQRNKVMTETISNIDKQKEDLNRRMTSLQDRLFKQFNAMDLLVGQLANTSSSLLASLENL 467
Cdd:COG1345  377 DDLLDSYTGSDGTITSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLASL 450
 
Name Accession Description Interval E-value
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-467 2.14e-135

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 398.06  E-value: 2.14e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   1 MAGVT--GIGSGIDIDSIVKSMVAAERAPKEsQLANLEMKTTTQITAIGALKSAISDFQTALRGLNKPELFQARSATSSK 78
Cdd:COG1345    1 MASISslGLGSGLDTDSLVSQLMAAERAPLT-RLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKATSSN 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  79 SDLVGVTAGTTAGAGSYQVEVKELATSSKVALAAVKSTAEAparFGSGSLEIKLGNEGSFSITVDeSNNTLAGIRDAINK 158
Cdd:COG1345   80 ESAVTATATSGAAAGSYSIEVTQLAQAQSLASAAFASATTT---LGTGTLTITVGDGKTVTITID-ANDTLADIADAINA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 159 QGAekGVTATIVTDDqGARLVLSSSKTGADKDITVGASpsgvageGQQSLS-VLAFdgvepDDDAGPRILAQAQSSVITV 237
Cdd:COG1345  156 AGA--GVTASIVNDG-SYRLVLTSKKTGAANAITVSVS-------GDGALSaLLGF-----DPASGMTETQAAQDAKLTV 220

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 238 DGLTVTSETNKVEGAIEGVTLDLKAKTakDEPLTINVAEDKAGVKKQIQSFVDSYNKLIGVINEQTKVTSvgDGKAPVTG 317
Cdd:COG1345  221 NGITITSSSNTFTDAIDGVTLTLKKVT--GGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTK--DEETAKAG 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 318 ALVGDATARTLLGTIRSELTN-VQGEGALRALADLGITTQKDGTLKIDDDKLSKVMDSNFTELPALFTG---EKGIATRL 393
Cdd:COG1345  297 ALLGDSTLRSLQSQLRSALSSpVSGGGSYKSLSDIGITTDKDGKLELDETKLDKALAEDPDAVAKLFTGdgkTTGIATRL 376

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503748516 394 DEKLKPYTETGGILEQRNKVMTETISNIDKQKEDLNRRMTSLQDRLFKQFNAMDLLVGQLANTSSSLLASLENL 467
Cdd:COG1345  377 DDLLDSYTGSDGTITSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLASL 450
fliD PRK08032
flagellar capping protein; Reviewed
 1-460 1.18e-79

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 255.00  E-value: 1.18e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   1 MAGVT--GIGSGIDIDSIVKSMVAAERApKESQLANLEMKTTTQITAIGALKSAISDFQTALRGLNKPELFQARSATSSK 78
Cdd:PRK08032   1 MASISslGVGSGLDLDSLLDSLTAAEKK-RLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVSSST 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  79 SDLVGVTAGtTAGAGSYQVEVKELATSSKVALAAVKSTAEAPARFGSG-SLEIKLGNE-GSFSITVDESNNTLAGIRDAI 156
Cdd:PRK08032  80 TAFSATTDS-GASAGKYTISVTQLAQAQSLTTATVSSTKEALGTSDSTrTITITQPGRkEPLEIDLTAGQTSLSGIRDAI 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 157 NKqgAEKGVTATIV-TDDQGARLVLSSSKTGADKDITvgaspsgVAGEGQQSL-SVLAFDGvePDDDAGPRILAQAQSSV 234
Cdd:PRK08032 159 NK--AEGGVSASIIkVGDGEYRLVLTSKDTGTDNAMT-------ISVEGDSKLnDFLNYDS--STGSGNMTQSVAAQNAK 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 235 ITVDGLTVTSETNKVEGAIEGVTLDLKAKTAKDEPLTINvaEDKAGVKKQIQSFVDSYNKLIGVINEQTKVTSVGDGKAP 314
Cdd:PRK08032 228 LTVNGIAIERQSNTITDAPEGITLNLKKVTTGNQTLTIT--KDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAVDAGADQ 305

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 315 VT--GALVGDATARTLLGTIRSELTNVQGEGALRALADLGITTQ-KDGTLKIDDDKLSKVMDSNFTELPALFTG---EKG 388
Cdd:PRK08032 306 SSsnGALLGDSTLRTIQTQLKSQLANSQSSSDFKTLAQIGITQDpSDGKLEIDDDKLTKALKEDPAGVKALFVGdgkKTG 385

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503748516 389 IATRLDEKLKPYTETGGILEQRNKVMTETISNIDKQKEDLNRRMTSLQDRLFKQFNAMDLLVGQLANTSSSL 460
Cdd:PRK08032 386 ITTQIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYL 457
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 230-455 6.13e-60

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 196.36  E-value: 6.13e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  230 AQSSVITVDGLTVTSETNKVEGAIEGVTLDLKAKTAKDEPlTINVAEDKAGVKKQIQSFVDSYNKLIGVINEQTKVTsvG 309
Cdd:pfam07195   1 AQNAEFTVDGIKVTSSSNTVTDVIDGVTLNLTKTTEGGET-TLSVSTDTDGIKEAIKDFVDAYNELITTINELTSYT--L 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  310 DGKAPVTGALVGDATARTLLGTIRSELTNVQGEGALRALADLGITTQKD-GTLKIDDDKLSKVMDSNFTELPALFTG--- 385
Cdd:pfam07195  78 DEETKKAGALAGDSTLRSILSQLRSVLSSSVSDGSISSLADIGITTDSDyGTLELDEEKLDKALKENPDSVAELFTGdgs 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503748516  386 --EKGIATRLDEKLKPYTE-TGGILEQRNKVMTETISNIDKQKEDLNRRMTSLQDRLFKQFNAMDLLVGQLAN 455
Cdd:pfam07195 158 rvDTGFAKRLTDLLKSYVGaSNGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVSKMNA 230
 
Name Accession Description Interval E-value
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-467 2.14e-135

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 398.06  E-value: 2.14e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   1 MAGVT--GIGSGIDIDSIVKSMVAAERAPKEsQLANLEMKTTTQITAIGALKSAISDFQTALRGLNKPELFQARSATSSK 78
Cdd:COG1345    1 MASISslGLGSGLDTDSLVSQLMAAERAPLT-RLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKATSSN 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  79 SDLVGVTAGTTAGAGSYQVEVKELATSSKVALAAVKSTAEAparFGSGSLEIKLGNEGSFSITVDeSNNTLAGIRDAINK 158
Cdd:COG1345   80 ESAVTATATSGAAAGSYSIEVTQLAQAQSLASAAFASATTT---LGTGTLTITVGDGKTVTITID-ANDTLADIADAINA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 159 QGAekGVTATIVTDDqGARLVLSSSKTGADKDITVGASpsgvageGQQSLS-VLAFdgvepDDDAGPRILAQAQSSVITV 237
Cdd:COG1345  156 AGA--GVTASIVNDG-SYRLVLTSKKTGAANAITVSVS-------GDGALSaLLGF-----DPASGMTETQAAQDAKLTV 220

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 238 DGLTVTSETNKVEGAIEGVTLDLKAKTakDEPLTINVAEDKAGVKKQIQSFVDSYNKLIGVINEQTKVTSvgDGKAPVTG 317
Cdd:COG1345  221 NGITITSSSNTFTDAIDGVTLTLKKVT--GGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTK--DEETAKAG 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 318 ALVGDATARTLLGTIRSELTN-VQGEGALRALADLGITTQKDGTLKIDDDKLSKVMDSNFTELPALFTG---EKGIATRL 393
Cdd:COG1345  297 ALLGDSTLRSLQSQLRSALSSpVSGGGSYKSLSDIGITTDKDGKLELDETKLDKALAEDPDAVAKLFTGdgkTTGIATRL 376

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503748516 394 DEKLKPYTETGGILEQRNKVMTETISNIDKQKEDLNRRMTSLQDRLFKQFNAMDLLVGQLANTSSSLLASLENL 467
Cdd:COG1345  377 DDLLDSYTGSDGTITSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLASL 450
fliD PRK08032
flagellar capping protein; Reviewed
 1-460 1.18e-79

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 255.00  E-value: 1.18e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   1 MAGVT--GIGSGIDIDSIVKSMVAAERApKESQLANLEMKTTTQITAIGALKSAISDFQTALRGLNKPELFQARSATSSK 78
Cdd:PRK08032   1 MASISslGVGSGLDLDSLLDSLTAAEKK-RLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVSSST 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  79 SDLVGVTAGtTAGAGSYQVEVKELATSSKVALAAVKSTAEAPARFGSG-SLEIKLGNE-GSFSITVDESNNTLAGIRDAI 156
Cdd:PRK08032  80 TAFSATTDS-GASAGKYTISVTQLAQAQSLTTATVSSTKEALGTSDSTrTITITQPGRkEPLEIDLTAGQTSLSGIRDAI 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 157 NKqgAEKGVTATIV-TDDQGARLVLSSSKTGADKDITvgaspsgVAGEGQQSL-SVLAFDGvePDDDAGPRILAQAQSSV 234
Cdd:PRK08032 159 NK--AEGGVSASIIkVGDGEYRLVLTSKDTGTDNAMT-------ISVEGDSKLnDFLNYDS--STGSGNMTQSVAAQNAK 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 235 ITVDGLTVTSETNKVEGAIEGVTLDLKAKTAKDEPLTINvaEDKAGVKKQIQSFVDSYNKLIGVINEQTKVTSVGDGKAP 314
Cdd:PRK08032 228 LTVNGIAIERQSNTITDAPEGITLNLKKVTTGNQTLTIT--KDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAVDAGADQ 305

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 315 VT--GALVGDATARTLLGTIRSELTNVQGEGALRALADLGITTQ-KDGTLKIDDDKLSKVMDSNFTELPALFTG---EKG 388
Cdd:PRK08032 306 SSsnGALLGDSTLRTIQTQLKSQLANSQSSSDFKTLAQIGITQDpSDGKLEIDDDKLTKALKEDPAGVKALFVGdgkKTG 385

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503748516 389 IATRLDEKLKPYTETGGILEQRNKVMTETISNIDKQKEDLNRRMTSLQDRLFKQFNAMDLLVGQLANTSSSL 460
Cdd:PRK08032 386 ITTQIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYL 457
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 230-455 6.13e-60

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 196.36  E-value: 6.13e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  230 AQSSVITVDGLTVTSETNKVEGAIEGVTLDLKAKTAKDEPlTINVAEDKAGVKKQIQSFVDSYNKLIGVINEQTKVTsvG 309
Cdd:pfam07195   1 AQNAEFTVDGIKVTSSSNTVTDVIDGVTLNLTKTTEGGET-TLSVSTDTDGIKEAIKDFVDAYNELITTINELTSYT--L 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  310 DGKAPVTGALVGDATARTLLGTIRSELTNVQGEGALRALADLGITTQKD-GTLKIDDDKLSKVMDSNFTELPALFTG--- 385
Cdd:pfam07195  78 DEETKKAGALAGDSTLRSILSQLRSVLSSSVSDGSISSLADIGITTDSDyGTLELDEEKLDKALKENPDSVAELFTGdgs 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503748516  386 --EKGIATRLDEKLKPYTE-TGGILEQRNKVMTETISNIDKQKEDLNRRMTSLQDRLFKQFNAMDLLVGQLAN 455
Cdd:pfam07195 158 rvDTGFAKRLTDLLKSYVGaSNGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVSKMNA 230
fliD PRK07737
flagellar hook-associated protein 2;
4-464 1.40e-43

flagellar hook-associated protein 2;


Pssm-ID: 236082 [Multi-domain]  Cd Length: 501  Bit Score: 160.36  E-value: 1.40e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   4 VTGIGSGIDIDSIVKSMVAAERAPkesqLANLEMKTTT---QITAIGALKSAISDFQTAL-RGLNKPELFQARSATSSKS 79
Cdd:PRK07737   5 ITGLASGMDIDDIVSKLMKTERAP----LDKLTQKKQTlewQRDSYREMNTLLKDLDDYIfNNITRQSTYLKKTVTSSNE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  80 DLVGVTAGTTAGAGSYQVEVKELATSskvalAAVKSTAEAPARFGS-GSLEIKLGNEGS-----FSITVDeSNNTLAGIR 153
Cdd:PRK07737  81 SVVTATASSSAANGSTTMQVTQLATA-----ATWKSSAKTSFYTGAdQTLTFNVTNPGEttaktVEISVK-QTDTLDDVI 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 154 DAINKQGAekGVTA----TIVTDDQGARLVLSSSKTGAdkditvGASPSGVAGEGQQSLS-VLAFDGVEPDDDAGPRilA 228
Cdd:PRK07737 155 SKLNSSDL--GVSAfkdkIWNGTEYVETIAITSKATGA------GASIQAADGATASFFSqQLGFTNLDADNELTAK--T 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 229 QAQSSVITVDGLTVTSETNKVEgaIEGVTLDLKAKTAKdePLTINVAEDKAGVKKQIQSFVDSYNKLIGVINEQTKVTSV 308
Cdd:PRK07737 225 EGQNAQVTINGLQTERTSNTFT--INGVTYTLKNTTAG--TVTLSVATDVDGIFNKIKDFVDKYNELIDKINAKLKEERY 300

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 309 GDGKaPVT---------------------GALVGDATARTLLGTIRSEL-TNVQG-EGALRALADLGITT----QKDGTL 361
Cdd:PRK07737 301 RDYP-PLTdeqkeamtekqielweekaksGLLRGDSILSSALSKMRMDFyTKVEGiDGGFSQLAQIGITTssnyLDGGKL 379

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 362 KIDDDKLSKVMDSNFTELPALFTG--------EKGIATRLDEKLKpytETGGILEQR--NKVMTETISNIDKQKEDLNRR 431
Cdd:PRK07737 380 EIDETKLRQKIKENPDAVYQLFNSggsssnynEKGIARRLRDTLK---ETIKSIEQKagNTTMTNQQFAIGKDLNQIETQ 456

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|
gi 503748516 432 MTSLQDRL-------FKQFNAMDLLVgQLANTSSSLLASL 464
Cdd:PRK07737 457 IDRFQDRLkqiedryYKKFSAMEKAI-QKANEQSMYLMNA 495
fliD PRK06664
flagellar hook-associated protein FliD; Validated
 1-460 4.56e-36

flagellar hook-associated protein FliD; Validated


Pssm-ID: 235848 [Multi-domain]  Cd Length: 661  Bit Score: 141.44  E-value: 4.56e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   1 MAGVT--GIGSGIDIDSIVKSMVAAERAPK---ESQLANLEMktttQITAIGALKSAISDFQTALRGL---NKPelFQAR 72
Cdd:PRK06664   1 MSDFTipGVNSGYNTNEIVKSLMKLERIPIdrsEQKLESLKQ----QKDAWQDINRKITDLRSKARALysfNNP--FAEK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  73 SATSSKSDLVGVTAGTTAGAGSYQVEVKELATSSKVALAAVKSTAEAParfgSGSLEIKLGNEgsfSITVDESNNTLAGI 152
Cdd:PRK06664  75 SANSSNEGVLTGDASRGAKNGNHKLEIKQIASSDQFLSDNFPKDIQIP----EGTYTFLVGKK---EISVKFSGGDIRDL 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 153 RDAINKQGAEKgVTATIVTDDQGAR-LVLSSSKTGAD------------------------------------------- 188
Cdd:PRK06664 148 VSAINNRGKGF-LSASIVKSDGDGNsLTLTSLKTGKEnklkfedealglakqiglvgelktnfppneqpivygqssstnk 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 189 -----------------------------------------------------------KDITVGASPSGVAGEGQQSL- 208
Cdd:PRK06664 227 lfftengivleplseqsidipetieikkrskiefevsyedaseeeienkivfnpgeatfEGAKVENEDSQVDLESDLKLp 306

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 209 --------------------------------------------------------------SVLAFDGVEPDDDAGPRI 226
Cdd:PRK06664 307 kekkyiqmnmlkieskeghslklppinasdnfekvelplgelsdlkalniennannkaivirNIEIFDPKARGGALPVNA 386

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 227 LAQAQSSVITVDGLTVTSETNKVEGAIEGVTLDLKAKTakDEPLTINVAEDKAGVKKQIQSFVDSYNKLIGVINEQTKV- 305
Cdd:PRK06664 387 KSEAKDAKIKFDGVEVERDKNEITDLIPGVTLNLHKAS--EDPVTLKIEPDYEKIKNLIIEFVAAYNEVLAEINIVTSNe 464

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 306 -TSVGDGKAPVT-----------GALVGDATARTLLGTIRSELTN---VQGEGALRALADLGITTQK---------DGTL 361
Cdd:PRK06664 465 kSSIIEELTYLSdeekeeayknlGLLRGEFTLLRLKSRLKTIISSsypTSDDNAFRMLNQIGISTNSvgssggliqDGYL 544

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 362 KIDDDKLSKVMDSNFTELPALFTG--------EKGIATRLDEKLKPYTETGGILEQRNKVMTETISNIDKQKEDLNRRMT 433
Cdd:PRK06664 545 ELDEKKLDEVLKENPDSVRELFAFdsngdavmDNGVAKMLLEYLSPYTQAGGIIYNKVKGLDERIADNNKKIEEYEKKLE 624

                        650       660
                 ....*....|....*....|....*..
gi 503748516 434 SLQDRLFKQFNAMDLLVGQLANTSSSL 460
Cdd:PRK06664 625 SKERKLKGKYLTMDQTVKKMKEQSNYL 651
fliD PRK08724
flagellar filament capping protein FliD;
3-464 5.21e-32

flagellar filament capping protein FliD;


Pssm-ID: 236335 [Multi-domain]  Cd Length: 673  Bit Score: 129.61  E-value: 5.21e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   3 GVTGIGSGIDIDSIVKSMVAAERAPKESQLANLEMKTTTQITAIGALKSAISDFQTALRGLNKPELFQARSATSSKSDLV 82
Cdd:PRK08724   4 GPMGMSGGMDINSMVSKIVDAERVPKQQRIDNERTDIDTSISAYGRLRESLDTMKNLMTNFRQEKAFAVRTVDTSDEDVV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  83 GVTAGTTAGAGSYQVEVKELATSSKVALAAVKSTaeapARFGSGSLEIKLGNEgSFSITVdESNNTLAGIRDAINKQGAE 162
Cdd:PRK08724  84 SATATTDAIAGKYAIDVLQLAQSHKVASDVLDED----AKFGPGKLQISLGDK-SFTLDV-VGNSKLVDIVRGINGAKSN 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 163 KGVTATIVTDDQGARLVLSSSKTGADKDITV------------------------------------------------- 193
Cdd:PRK08724 158 PGVRASIINDVEGPRLILASNVSGKDNQIKIsvdaeygnplkrfeyktledrvralekaraaaqqviapltpeeqkvape 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 194 ----------------GASPSGVAGEGQQSLSVLAFDGVEPDDDAGPRILAQAQSSVITV----------DGLTVTSETN 247
Cdd:PRK08724 238 lsdeegnaippadqevAEEIQDAAQIAQQQEATAALAALEEPISAGGATAAAAGQAAIDAaeakaylrpeDRIPGWTETA 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 248 K---------------------------VEGAIEGVTLD----------------------LKAKTAKDE--PLTI---- 272
Cdd:PRK08724 318 SgtlldsypepeeeldeaaiakapdvpgWSNTASGTLTDsyvtpkeaqaeieqklaqekaqLDAAVEKGEltPEQAkqia 397

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 273 ----------------------------------------------------------NVAED----------------- 277
Cdd:PRK08724 398 raklepeererlekidkaqaalkqaqsafdlysgmtevqsaqdsmvvldgvaqlssnnNVIEDaiegvdltlkgktdknk 477

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 278 ----------KAGVKKQIQSFVDSYNKLIgvinEQTKVTSVGDGKAPVTGALVGDATARTLLGTIRSELTNV--QGEGAL 345
Cdd:PRK08724 478 ppaeigveydRQSVRNDIEQFVAAYNQFY----QTSKALSGVDPATGQKGPLAGDSTVRSADSRLKSVFSSSieQAPENL 553

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 346 RALADLGITTQKDGTLKIDDDKLSKVMDSNFTELPALFTGEKGIATRLDEKLKPYTETGGILEQRNKVMTETISNIDKQK 425
Cdd:PRK08724 554 KSLTEFGITTTRQGTLEINYDMLDRQLNNNFNKLEEFFGGNTGFAKRVEDAIQSMTGVTGSIRTREKSLREQNYRLNDDQ 633

                        650       660       670
                 ....*....|....*....|....*....|....*....
gi 503748516 426 EDLNRRMTSLQDRLFKQFNAMDLLVGQLANTSSSLLASL 464
Cdd:PRK08724 634 VALDRRMESLEKRTHAKFAAMQDATGKMQGQLGGMMNAL 672
fliD PRK06798
flagellar hook-associated protein 2;
1-444 7.86e-30

flagellar hook-associated protein 2;


Pssm-ID: 180698 [Multi-domain]  Cd Length: 440  Bit Score: 121.04  E-value: 7.86e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   1 MAG-VTGIGSGIDIDSIVKSMVAAERApKESQLANLEMKTT---TQITAI-------GALKSAISDFQTALRGLNKPElF 69
Cdd:PRK06798   1 MAGtATGIGGRQQIWNLGNNMIDTSNF-VELELQALEMKKTpytNQKQSLtsekllyASLKKEFSSFLQTFKDLTTFK-G 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  70 QARSATSSKSDLVGVTAGTTAGAGSYQVEVKELATSSKVALAAVKStaeaparfgsgsLEIKLGNEGSFSITVDESNNTL 149
Cdd:PRK06798  79 NEKKVTLSQEGYITVQADASAIAGTYNITVENLAQRHQITSKPVPD------------IDAKIGVDETIKINGKEIKVTK 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 150 -AGIRDAINK-QGAEKGVTATIVtddqGARLVLSSSKTGADKDITVGASPSGVAgegqQSLSVLAFDGVepdddAGPRIL 227
Cdd:PRK06798 147 dMTYKDLINKiNSGNYGVSAYTL----GNKIFFTSTTEGEEGSIKFTDGDSGFL----EAIGLVQSSGV-----AANDIT 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 228 AqAQSSVITVDGLTVTSETNKVEgAIEGVTLDLKAKTAKDEPLTINVAEDKAGVKkQIQSFVDSYNKLigvineqtkvTS 307
Cdd:PRK06798 214 A-AENAEYTINGIKGTSATNKIE-TIPGVTINLKKETTEPIKLTIQDSNVKDAAN-LIKKMVDEYNKA----------VS 280

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 308 VGDGKAPVTGALVGDATArtllGTIRSELTNV-QGEGALRALADLGITTQKDGTLKIDDDKLSKVMDSNFTELPALFTGE 386
Cdd:PRK06798 281 TVDLFAGKGGALQGSAIM----FSINRAMNNVfTFSQDGNYLFSFGIQVDKEGTMKVDEEALKKALKENPDAAKQFFFGI 356

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 503748516 387 KGIATRLDEKLKPYTETGGILEQRNKVMTETISNIDKQKEDLNRRMTSLQDRLFKQFN 444
Cdd:PRK06798 357 NGLGKEMEKSLDKIFGDEGIIGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQ 414
PRK12765 PRK12765
flagellar filament capping protein FliD;
6-385 1.03e-28

flagellar filament capping protein FliD;


Pssm-ID: 237194 [Multi-domain]  Cd Length: 595  Bit Score: 119.23  E-value: 1.03e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516   6 GIGS-GIDIDSIVKSMVAAERAPKESQLANLEMKTTTQITAIGALKSAISDFQTALRGLNKPELFQARSATSSKSDLVGV 84
Cdd:PRK12765  10 GFGSdGVLSQDTIDKLKEADQKAQIDPITTKIEENTTKQKDLTAIKTLLSNFKTSVSSLADETSYLKRKVSISDNPPASV 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516  85 TAGTTAGAGSYQVEVKELATSSKVALAAVKSTAEAPARFGSGSLEIKLGNEG-SFSITVDeSNNTLAGIRDAINKQGAEK 163
Cdd:PRK12765  90 TVNSGVNLQSMKINVSQLAQKDVYQSKGFANDSSFVNATLTGETDLTIFSNGkEYTITVD-KSTTYRDLADKINEASGGK 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 164 gVTATI--VTDDQGARLVLSSSKTGADKDITV--GASPSGVAGEGQQSLSVLAFDGVEPD-------------DDAGPRI 226
Cdd:PRK12765 169 -IQAKIlnVGGKNPYRLVLQSKETGADNAISFyaGKKDAQSDNDAENIFKSLGWDLDDTStidpgkdkkgygiKDASLHI 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 227 LaQAQSSVITVDGLTVTSETNKVEGAIEGVTLDLKaktaKDEPLTINVAEDKAGVKKQIQSFVDSYNKLIGVINEQTKVT 306
Cdd:PRK12765 248 Q-TAQNAEFTYNGIKITRSSNTIDDLGVGVTLTLN----KTGSINFDIQQDTEGVTKAVEDLVDAYNNLVTNLNAATSYN 322

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 503748516 307 SVGDGKAPVTGALVGDATARTLLGTIRSELTNVQGEGAlRALADLGITTQKDGTLKIDDDKLSKVMDSNFTELPALFTG 385
Cdd:PRK12765 323 SETGTKGTFQGVSEITSIRSSILADLFSQVVDGTDEDG-KSLQDFGLSLNSDGTLSFDSSKFEQKVSEDPDSTQSFFSG 400
FliD_N pfam02465
Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 9-106 2.13e-25

Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the N-terminal region of this family of proteins.


Pssm-ID: 460566 [Multi-domain]  Cd Length: 97  Bit Score: 99.56  E-value: 2.13e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516    9 SGIDIDSIVKSMVAAERAPKEsQLANLEMKTTTQITAIGALKSAISDFQTALRGLNKPELFQARSATSSKSDLVGVTAGT 88
Cdd:pfam02465   1 SGLDTDSIVDQLMAAERAPLD-RLEQQKTTLEWKQSAYGELNSKLSSLQSALKALSSSSTFNAKKATSSNESVVTATASS 79

                          90
                  ....*....|....*...
gi 503748516   89 TAGAGSYQVEVKELATSS 106
Cdd:pfam02465  80 GAAAGSYSIEVTQLAQAQ 97
fliD PRK08453
flagellar filament capping protein FliD;
227-460 1.28e-19

flagellar filament capping protein FliD;


Pssm-ID: 181432 [Multi-domain]  Cd Length: 673  Bit Score: 91.82  E-value: 1.28e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 227 LAQAQSSVITVDGLTVTSETNKVEGAIEGVTLDLKAKTAKDEPLTINVAEDKAGVKKQIQSFVDSYNKLIGVINEQTKVt 306
Cdd:PRK08453 429 LQKASDAKFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRDNQAIIDSLKEFVKAYNELIPKLDEDTRY- 507

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 307 svgDGKAPVTGALVGDATARtllgTIRSELTN-----VQGEGALRALADLGITTQKDGTLKIDDDKLSKVMDSNFTELPA 381
Cdd:PRK08453 508 ---DADTKIAGIFNGVGDIR----SIRSSLNNvfsysVHTDNGVESLMKYGLSLDEKGVMTLDEAKLSSALNSDPKATQD 580

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503748516 382 LFTG------------EKGIATRLDEKLKPYTETGGI-LEQRNKVMTETISNIDKQKEDLNRRMTSLQDRLFKQFNAMDL 448
Cdd:PRK08453 581 FFYGsdskdmggreihQEGIFSKFNQVIANLIDGGNAkLKIYEDSLTRDAKSLTKDKENAQELLKTRYDIMAERFAAYDS 660

                        250
                 ....*....|..
gi 503748516 449 LVGQLANTSSSL 460
Cdd:PRK08453 661 QISKANQKFNSV 672
Flagellin_IN pfam07196
Flagellin hook IN motif; The function of this region is not clear, but it is found in many ...
 127-184 5.70e-04

Flagellin hook IN motif; The function of this region is not clear, but it is found in many flagellar hook proteins, including FliD homologs. It is normally repeated, but is also apparently seen as a singleton. A conserved IN is seen at the centre of the motif. The diversity of these motifs makes it likely that some members of the family are not identified.


Pssm-ID: 399878 [Multi-domain]  Cd Length: 55  Bit Score: 37.97  E-value: 5.70e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 503748516  127 SLEIKLGNEGSFSITVDeSNNTLAGIRDAINKQGAEKGVTATIvtDDQGARLVLSSSK 184
Cdd:pfam07196   1 TLTINGVGGGGTDISVS-AGDSLGDLADAINAVSSKTGVSASI--DTDTGRLVLTSTT 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH