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Conserved domains on  [gi|503712479|ref|WP_013946555|]
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MULTISPECIES: cytochrome b N-terminal domain-containing protein [unclassified Hyphomicrobium]

Protein Classification

cytochrome bc complex cytochrome b subunit( domain architecture ID 11441733)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-412 2.50e-167

Cytochrome b subunit of the bc complex [Energy production and conversion];


:

Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 475.43  E-value: 2.50e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  12 TRWGKWLDERLPIGRVVKNqFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGW 91
Cdd:COG1290    8 SGLADWLDERLPLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  92 MLRNFHAVGASMFFFAVYIHIFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDT 171
Cdd:COG1290   87 LIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPV 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 172 IvnglGTAVVEWLWGGYAVSGVTLNRFFSLHYL-LPFVLTGVVGLHIWALHIVGQNNPTGLDLKEP--TDCVPMHPYATS 248
Cdd:COG1290  167 I----GTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekVDGVPFHPYYTV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 249 KDAVGIFAFLLLYAWFVFFVPDylGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAFTSSflgiplgqyAKLCGVVAMF 328
Cdd:COG1290  243 KDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGS---------AKLGGVIAMG 311

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 329 SAVIIIAFAPWLDTSRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPaeGVYVVAAQIFTVCYFLFFLVAMPIVGLIETP 408
Cdd:COG1290  312 LAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIEKT 389


                 ....
gi 503712479 409 RRLP 412
Cdd:COG1290  390 KPLP 393
 
Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-412 2.50e-167

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 475.43  E-value: 2.50e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  12 TRWGKWLDERLPIGRVVKNqFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGW 91
Cdd:COG1290    8 SGLADWLDERLPLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  92 MLRNFHAVGASMFFFAVYIHIFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDT 171
Cdd:COG1290   87 LIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPV 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 172 IvnglGTAVVEWLWGGYAVSGVTLNRFFSLHYL-LPFVLTGVVGLHIWALHIVGQNNPTGLDLKEP--TDCVPMHPYATS 248
Cdd:COG1290  167 I----GTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekVDGVPFHPYYTV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 249 KDAVGIFAFLLLYAWFVFFVPDylGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAFTSSflgiplgqyAKLCGVVAMF 328
Cdd:COG1290  243 KDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGS---------AKLGGVIAMG 311

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 329 SAVIIIAFAPWLDTSRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPaeGVYVVAAQIFTVCYFLFFLVAMPIVGLIETP 408
Cdd:COG1290  312 LAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIEKT 389


                 ....
gi 503712479 409 RRLP 412
Cdd:COG1290  390 KPLP 393
CYTB MTH00119
cytochrome b; Provisional
 23-406 7.12e-140

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 405.05  E-value: 7.12e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00119  10 PLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYkAPREVlWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00119  90 MFFICIYLHIGRGLYYGSY-LYKET-WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYI----GQTLVE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLDLKepTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00119 164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSN--TDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS-------IP----NKLGGVLALAASILILFLMPFLHT 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAMPIVGLIE 406
Cdd:MTH00119 311 SKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALE 374
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 28-226 5.76e-76

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 235.34  E-value: 5.76e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  28 VKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGASMFFFA 107
Cdd:cd00284    6 VNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLM 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 108 VYIHIFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVEWLWGG 187
Cdd:cd00284   86 LYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVI----GITLVEWLWGG 161

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 503712479 188 YAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQN 226
Cdd:cd00284  162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
32-224 1.96e-66

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 210.70  E-value: 1.96e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479   32 FIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGASMFFFAVYIH 111
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  112 IFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVEWLWGGYAVS 191
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVI----GDTLVEWIWGSFSVD 156

                         170       180       190
                  ....*....|....*....|....*....|...
gi 503712479  192 GVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVG 224
Cdd:pfam00033 157 QATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-412 2.50e-167

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 475.43  E-value: 2.50e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  12 TRWGKWLDERLPIGRVVKNqFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGW 91
Cdd:COG1290    8 SGLADWLDERLPLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  92 MLRNFHAVGASMFFFAVYIHIFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDT 171
Cdd:COG1290   87 LIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPV 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 172 IvnglGTAVVEWLWGGYAVSGVTLNRFFSLHYL-LPFVLTGVVGLHIWALHIVGQNNPTGLDLKEP--TDCVPMHPYATS 248
Cdd:COG1290  167 I----GTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekVDGVPFHPYYTV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 249 KDAVGIFAFLLLYAWFVFFVPDylGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAFTSSflgiplgqyAKLCGVVAMF 328
Cdd:COG1290  243 KDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGS---------AKLGGVIAMG 311

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 329 SAVIIIAFAPWLDTSRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPaeGVYVVAAQIFTVCYFLFFLVAMPIVGLIETP 408
Cdd:COG1290  312 LAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIEKT 389


                 ....
gi 503712479 409 RRLP 412
Cdd:COG1290  390 KPLP 393
CYTB MTH00119
cytochrome b; Provisional
 23-406 7.12e-140

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 405.05  E-value: 7.12e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00119  10 PLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYkAPREVlWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00119  90 MFFICIYLHIGRGLYYGSY-LYKET-WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYI----GQTLVE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLDLKepTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00119 164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSN--TDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS-------IP----NKLGGVLALAASILILFLMPFLHT 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAMPIVGLIE 406
Cdd:MTH00119 311 SKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALE 374
CYTB MTH00156
cytochrome b; Provisional
 30-397 9.02e-139

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 401.47  E-value: 9.02e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  30 NQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGASMFFFAVY 109
Cdd:MTH00156   6 NSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIY 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 110 IHIFRGFYYGSYKAPreVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTivngLGTAVVEWLWGGYA 189
Cdd:MTH00156  86 LHIGRGIYYGSYKLK--HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPY----LGTDLVQWIWGGFS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 190 VSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLDLKepTDCVPMHPYATSKDAVGIFAFLLLYAWFVFFVP 269
Cdd:MTH00156 160 VDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSN--IDKIPFHPYFTFKDLVGFIIMLMLLILLTLINP 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 270 DYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDTSRIRSAK 349
Cdd:MTH00156 238 YLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS-------IP----NKLGGVIALVMSILILMILPFTNKSKFRGNQ 306

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 503712479 350 YRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLV 397
Cdd:MTH00156 307 FYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFII 354
CYTB MTH00145
cytochrome b; Provisional
 23-406 1.65e-138

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 401.59  E-value: 1.65e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00145  10 PVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYKAPRevLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSAldtiVNGLGTAVVE 182
Cdd:MTH00145  90 FFFICIYLHIGRGLYYGSYLMQH--TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSA----IPYVGKMLVE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLDlkEPTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00145 164 WVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLD--SDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS-------IP----NKLGGVIALVMSIVILFFLPLLHV 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVaMPIVGLIE 406
Cdd:MTH00145 311 GKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLW 373
CYTB MTH00191
cytochrome b; Provisional
 23-401 2.51e-138

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 400.83  E-value: 2.51e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00191   6 PLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGAS 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYKapREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00191  86 FFFICIYLHIGRGLYYGSYL--NKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYI----GDDLVQ 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLDLKepTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00191 160 WLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSD--SDKIPFHPYFSYKDILGFFILLFLLL 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00191 238 FLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS-------IP----NKLGGVLALVMSILVLFLLPLLHT 306

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAMPI 401
Cdd:MTH00191 307 SKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00100
cytochrome b; Provisional
 23-406 6.34e-138

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 400.17  E-value: 6.34e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00100   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYKAPREvlWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00100  89 MFFICLFLHVGRGLYYGSYLFLET--WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYI----GTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLDlkEPTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIP--SDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS-------IP----NKLGGVLALLLSILILAIIPLLHT 309

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAMPIVGLIE 406
Cdd:MTH00100 310 SKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIE 373
CYTB MTH00022
cytochrome b; Validated
 23-407 5.96e-134

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 390.22  E-value: 5.96e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00022   8 PLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGAS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSY-KAPrevLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVV 181
Cdd:MTH00022  88 LFFLCLYIHIGRGLYYGGYlKFH---VWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYV----GTDIV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 182 EWLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGldLKEPTDCVPMHPYATSKDAVGIFAFLLLY 261
Cdd:MTH00022 161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIG--LNSSVDKVSFHVYYTSKDWYGIVVLFFLL 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 262 AWFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLD 341
Cdd:MTH00022 239 SFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS-------IP----NKLGGVVAMFFSILILFFLPLLH 307

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503712479 342 TSRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAMPIVGLIET 407
Cdd:MTH00022 308 TSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELEN 373
CYTB MTH00016
cytochrome b; Validated
 23-402 1.32e-132

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 386.73  E-value: 1.32e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00016  10 PLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYKAPRevLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00016  90 FFFICLYLHIGRGIYYGSYFLME--TWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYI----GKMLVQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGldLKEPTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00016 164 WLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLG--VNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS-------IP----NKLGGVVAMFASILILFFLPFIFK 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVaMPIV 402
Cdd:MTH00016 311 QKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLL 369
CYTB MTH00074
cytochrome b; Provisional
 23-406 4.76e-132

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 385.19  E-value: 4.76e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00074  10 PLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYKAPREvlWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00074  90 FFFICIYLHIGRGLYYGSYMYKET--WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYM----GDTLVQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLDlkEPTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00074 164 WIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLN--SNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS-------IP----NKLGGVLALLASILILMLIPMLHT 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAMPIVGLIE 406
Cdd:MTH00074 311 SKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00131
cytochrome b; Provisional
 23-406 6.50e-128

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 374.76  E-value: 6.50e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00131   9 PLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYKApREVlWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00131  89 FFFICIYLHIGRGLYYGSYLY-KET-WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYV----GNTLVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLDlkEPTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00131 163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLN--SDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS-------IP----NKLGGVLALLFSILVLMVVPILHT 309

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAMPIVGLIE 406
Cdd:MTH00131 310 SKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLE 373
CYTB MTH00034
cytochrome b; Validated
 23-406 5.35e-126

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 369.81  E-value: 5.35e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00034   9 PLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYKapREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00034  89 LFFICLYFHIGRGLYYGSYV--NIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYI----GTDIVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLDLKepTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSN--YDKVPFHTYFTTKDLVGFLILFAALS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00034 241 SLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS-------IP----NKLGGVIALVAAILVLFLVPILHT 309

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAMPIVGLIE 406
Cdd:MTH00034 310 SNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLE 373
CYTB MTH00053
cytochrome b; Provisional
 23-406 3.34e-124

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 365.57  E-value: 3.34e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00053  10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYKapREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00053  90 MFFLCVYFHIGRGIYYGSYT--KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYV----GDDIVR 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGldLKEPTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00053 164 WVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIG--VRSDIDKIPFHYYYVLKDLYGAVILLIILS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00053 242 IIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS-------IP----NKLGGVVALVFSILVLFFLPYLHK 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAMPIVGLIE 406
Cdd:MTH00053 311 SRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLE 374
CYTB MTH00224
cytochrome b; Provisional
 23-398 5.15e-115

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 341.90  E-value: 5.15e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  23 PIGRVVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGAS 102
Cdd:MTH00224  10 PAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 103 MFFFAVYIHIFRGFYYGSYKAPREvlWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVE 182
Cdd:MTH00224  90 MFFLFIYLHVGRGLYYGSFNLSET--WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYI----GKDLVE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 183 WLWGGYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGldLKEPTDCVPMHPYATSKDAVGIFAFLLLYA 262
Cdd:MTH00224 164 WIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIG--INADSARIPFHPYYSIKDALGYLIAILLLS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 263 WFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT 342
Cdd:MTH00224 242 LMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS-------IP----NKLGGVVALFAAILILFILPLTSV 310

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 503712479 343 SRIRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVA 398
Cdd:MTH00224 311 MNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIIS 366
CYTB MTH00033
cytochrome b; Provisional
 30-405 1.98e-99

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 302.24  E-value: 1.98e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  30 NQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGASMFFFAVY 109
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 110 IHIFRGFYYGSYKapREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVEWLWGGYA 189
Cdd:MTH00033  93 CHIGRGLYYGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSV----GGSIVEWIWGGFS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 190 VSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGldLKEPTDCVPMHPYATSKDAVGifaFLLLYAWFVFF-- 267
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLG--LVGLSDRTAFHVYFTIKDILG---FLILFGVFVIIgi 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 268 ---VPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAFTSsflgiplgqyaKLCGVVAMFSAVIIIAFAPWLDTSR 344
Cdd:MTH00033 242 eprIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPN-----------KLGGVLALFASILVLLLMPILDRSK 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503712479 345 IRSAKYRPIFKWFFWFFVFTCVSLGYLGSKPA-EGVYVVAAQIFTVCYFLFFLVAMPIVGLI 405
Cdd:MTH00033 311 IRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYL 372
CYTB MTH00086
cytochrome b; Provisional
 28-399 3.35e-89

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 274.89  E-value: 3.35e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  28 VKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGASMFFFA 107
Cdd:MTH00086   3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 108 VYIHIFRGFYYGSYKAprEVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTivngLGTAVVEWLWGG 187
Cdd:MTH00086  83 LYLHIFKGLFMMSYRL--KKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPI----WGPSIVMWIWGG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 188 YAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGL--DLkeptDCVPMHPYATSKDAVGIFaFLLLYAWFV 265
Cdd:MTH00086 157 FGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYChgDY----DKICFGPEYWNKDAYNII-FWLVFIIFS 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 266 FFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDTSRI 345
Cdd:MTH00086 232 LFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA-------IP----NKVLGVIALLMSIVVFYFFIFVNNYTS 300

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 503712479 346 RSAKyrpIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLVAM 399
Cdd:MTH00086 301 CLNK---LNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 28-226 5.76e-76

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 235.34  E-value: 5.76e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  28 VKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGASMFFFA 107
Cdd:cd00284    6 VNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLM 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 108 VYIHIFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVEWLWGG 187
Cdd:cd00284   86 LYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVI----GITLVEWLWGG 161

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 503712479 188 YAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQN 226
Cdd:cd00284  162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 27-397 1.47e-70

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 226.79  E-value: 1.47e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  27 VVKNQFIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGASMFFF 106
Cdd:MTH00046   4 LIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 107 AVYIHIFRGFYYGSYKapREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVEWLWG 186
Cdd:MTH00046  84 LLFIHMGRALYYSSYS--KKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIV----GSLVYKYIVG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 187 GYAVSGVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVGQNNPTGLdLKEPTDCVPMHPYATSKDAVGIFAFLLLYAWFVF 266
Cdd:MTH00046 158 GFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFS-SNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLF 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 267 FVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAFTSsflgiplgqyaKLCGVVamfsAVIIIAFAPWLDTSRIR 346
Cdd:MTH00046 237 VSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINS-----------KIGGLV----LVLSFLFFLWVPTFNGS 301

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 503712479 347 SAkYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCYFLFFLV 397
Cdd:MTH00046 302 SV-YSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
32-224 1.96e-66

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 210.70  E-value: 1.96e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479   32 FIDYPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRNFHAVGASMFFFAVYIH 111
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  112 IFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvnglGTAVVEWLWGGYAVS 191
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVI----GDTLVEWIWGSFSVD 156

                         170       180       190
                  ....*....|....*....|....*....|...
gi 503712479  192 GVTLNRFFSLHYLLPFVLTGVVGLHIWALHIVG 224
Cdd:pfam00033 157 QATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
PRK03735 PRK03735
cytochrome b6; Provisional
 16-216 1.26e-42

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 149.86  E-value: 1.26e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  16 KWLDERL---PIGRVVKNQFID---YPTPRNLNYLWTFGGILTLILVGQIATGVVLAMHYQPSATGAFNSIEQIRRDVNY 89
Cdd:PRK03735   7 DWFDERLditPIWRDIADHEVPehvNPAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAF 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  90 GWMLRNFHAVGASMFFFAVYIHIFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSAL 169
Cdd:PRK03735  87 GWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAI 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 503712479 170 DTIvnglGTAVVEWLWGGYAVSGVTLNRFFSLH-YLLPFVLTGVVGLH 216
Cdd:PRK03735 167 PVI----GDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAH 210
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
280-391 2.33e-38

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 134.14  E-value: 2.33e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  280 EANPLVTPPHIVPEWYFLPFYAILRAFTSsflgiplgqyaKLCGVVAMFSAVIIIAFAPWLDTSRIRSAKYRPIFKWFFW 359
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPS-----------KLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFW 69

                          90       100       110
                  ....*....|....*....|....*....|..
gi 503712479  360 FFVFTCVSLGYLGSKPAEGVYVVAAQIFTVCY 391
Cdd:pfam00032  70 LFVVDFVVLGWLGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
102-273 8.53e-38

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 135.06  E-value: 8.53e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  102 SMFFFAVYIHIFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSAldtiVNGLGTAVV 181
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSS----IPVVGTWLV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  182 EWLWGGYAVSGVTLNRFFSLH-YLLPFVLTGVVGLHIWALHIVGQNNPTGLDlkEPTDCVPMHPYATSKDAVGIFAFLLL 260
Cdd:pfam13631  77 WLLFGGPFPGTATIPRFYALHiLLLPGLILALIVAHLLLVEKHGQFPPPGTE--KNVVGVPFWPVFAVKMLLFFLITVAL 154

                         170
                  ....*....|...
gi 503712479  261 YAWFVFFVPDYLG 273
Cdd:pfam13631 155 LIGLAQINPIWLG 167
petB CHL00070
cytochrome b6
 17-208 1.19e-37

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 136.39  E-value: 1.19e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  17 WLDERLPIGRVVKNQFIDYpTPRNLNYLWTFGGI-LTLILVgQIATGVVLAMHYQPSATGAFNSIEQIRRDVNYGWMLRN 95
Cdd:CHL00070   7 WFEERLEIQAIADDITSKY-VPPHVNIFYCLGGItLTCFLV-QVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479  96 FHAVGASMFFFAVYIHIFRGFYYGSYKAPREVLWILGVLIMLLMMATAFMGYTLPWGQMSFWGVTVITNLFSALDTIvng 175
Cdd:CHL00070  85 VHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVI--- 161

                        170       180       190
                 ....*....|....*....|....*....|....
gi 503712479 176 lGTAVVEWLWGGYAVSGVTLNRFFSLH-YLLPFV 208
Cdd:CHL00070 162 -GSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLL 194
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 231-387 3.57e-32

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 119.29  E-value: 3.57e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503712479 231 LDLKEPTDCVPMHPYATSKDAVGIFAFLLLYAWFVFFVPDYLGHADNYIEANPLVTPPHIVPEWYFLPFYAILRAftssf 310
Cdd:cd00290    3 LGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA----- 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503712479 311 lgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDTSRIRSaKYRPIFKWFFWFFVFTCVSLGYLGSKPAEGVYVVAAQIF 387
Cdd:cd00290   78 --IP----NKLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
petD CHL00058
cytochrome b6/f complex subunit IV
 281-353 3.79e-05

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 43.84  E-value: 3.79e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503712479 281 ANPLVTPPHIVPEWYFLPFYAILRAftssflgIPlgqyAKLCGVVAMFSAVIIIAFAPWLDT-SRIRSAKYRPI 353
Cdd:CHL00058  66 ADPFATPLEILPEWYFFPVFQILRT-------VP----NKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPV 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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