NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|502828258|ref|WP_013063234|]
View 

MULTISPECIES: F0F1 ATP synthase subunit gamma [Prevotella]

Protein Classification

F0F1 ATP synthase subunit gamma( domain architecture ID 10793806)

F0F1 ATP synthase subunit gamma is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK13426 PRK13426
F0F1 ATP synthase subunit gamma; Provisional
 1-324 2.74e-177

F0F1 ATP synthase subunit gamma; Provisional


:

Pssm-ID: 237385  Cd Length: 291  Bit Score: 491.99  E-value: 2.74e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVV 80
Cdd:PRK13426   1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVERPVKRVAIVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  81 FSSNSSLCGGFNANIIKQMTHAVNEYaETIGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGR 160
Cdd:PRK13426  81 FSSNTSLCGGFNANIIKLLLQTIGEY-RTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLADKPSYEEAAALAMRLME 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 161 KFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESELQADHERdlesviatKQSQEYlknrgerkdegakseevkpln 240
Cdd:PRK13426 160 LFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQEKNAEHAG--------GVANDY--------------------- 210

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 241 dnfIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGG 320
Cdd:PRK13426 211 ---IIEPSADTVLNDLIPKLLSLKIYTALLDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGG 287


                 ....
gi 502828258 321 SVNN 324
Cdd:PRK13426 288 SMAN 291
 
Name Accession Description Interval E-value
PRK13426 PRK13426
F0F1 ATP synthase subunit gamma; Provisional
 1-324 2.74e-177

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 237385  Cd Length: 291  Bit Score: 491.99  E-value: 2.74e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVV 80
Cdd:PRK13426   1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVERPVKRVAIVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  81 FSSNSSLCGGFNANIIKQMTHAVNEYaETIGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGR 160
Cdd:PRK13426  81 FSSNTSLCGGFNANIIKLLLQTIGEY-RTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLADKPSYEEAAALAMRLME 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 161 KFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESELQADHERdlesviatKQSQEYlknrgerkdegakseevkpln 240
Cdd:PRK13426 160 LFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQEKNAEHAG--------GVANDY--------------------- 210

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 241 dnfIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGG 320
Cdd:PRK13426 211 ---IIEPSADTVLNDLIPKLLSLKIYTALLDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGG 287


                 ....
gi 502828258 321 SVNN 324
Cdd:PRK13426 288 SMAN 291
ATP-synt pfam00231
ATP synthase;
3-321 2.35e-117

ATP synthase;


Pssm-ID: 459722  Cd Length: 285  Bit Score: 339.89  E-value: 2.35e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258    3 SLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVVFS 82
Cdd:pfam00231   1 SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPEDSHPLLERREVKKVGLIVIT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   83 SNSSLCGGFNANIIKQMTHAVNEYAEtiGRDNVEIYPIGRKVYEKARKMGLNVQGEYS-ALADHPNVHDCIEIAMELGRK 161
Cdd:pfam00231  81 SDRGLCGGFNSNVIKAARALIEELLA--EGKEVKLIVVGRKGRDYFKKRGYEVILEFTgSLGDKPTFEEAAEIADELLDA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  162 FAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESElqadherdlesviatkqsqeylknrgerkdegaksEEVKPLND 241
Cdd:pfam00231 159 FLAGEIDEVYLVYNRFVSAISQEPTVEQLLPLDPEEE-----------------------------------EEEEESLA 203

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  242 NFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGGS 321
Cdd:pfam00231 204 DYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGA 283
AtpG COG0224
FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP ...
 1-321 9.82e-117

FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP synthase, gamma subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439994  Cd Length: 288  Bit Score: 338.28  E-value: 9.82e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVV 80
Cdd:COG0224    1 MASLKEIRRRIKSVKSTQKITKAMKMVAASKLRKAQERAEAARPYAEKLREVLAALAAASPEYDHPLLEEREVKRVGLIV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  81 FSSNSSLCGGFNANIIKQMTHAVNEYAEtiGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGR 160
Cdd:COG0224   81 ITSDRGLCGGFNSNVLKAAEELIKELQA--EGKEVELIVVGRKGRDFFKRRGINVVAEFTGLSDKPSFEDAKEIAEELLD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 161 KFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVEselqadherdlesviatkqsqeylknrgerkdegAKSEEVKPLN 240
Cdd:COG0224  159 AFLAGEIDEVYLVYNRFVSAITQEPVVEQLLPLDPE----------------------------------ELEEAEWETR 204

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 241 DNFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGG 320
Cdd:COG0224  205 ADYIFEPSPEEILDALLPRYLESQIYQALLESAASEHAARMTAMKNATDNAGELIDDLTLEYNRARQAAITQELSEIVGG 284


                 .
gi 502828258 321 S 321
Cdd:COG0224  285 A 285
F1-ATPase_gamma cd12151
mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, ...
 2-321 1.26e-99

mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.


Pssm-ID: 213394  Cd Length: 282  Bit Score: 294.87  E-value: 1.26e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   2 PSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVVF 81
Cdd:cd12151    1 ASLKEIKRRIKSVKNTQKITKAMKMVAAAKLRKAQRALEAARPYAEKLEEVLQRLLSSLDDEDPPLLEKREVKKVLLIVI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  82 SSNSSLCGGFNANIIKqmthAVNEYAETIGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGRK 161
Cdd:cd12151   81 TSDRGLCGGFNSNIIK----AAEELIKEADGKEVKLIVVGKKGRDYLKRRGYNIALPFSDIGDDPTYFEAASIIEELILD 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 162 FAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESElqadherdlesviatkqsqeylknrgerkdegakSEEVKPLND 241
Cdd:cd12151  157 FLNGEIDEVYIIYNKFKSAISQEPVVEQLLPLDKEEE----------------------------------EEESEGSRS 202

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 242 NFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGGS 321
Cdd:cd12151  203 DYIFEPDPEEVLDALLPFYLASLLYRALLESLASEQAARMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282
ATPsyn_F1gamma TIGR01146
ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in ...
 2-320 1.25e-80

ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273469  Cd Length: 286  Bit Score: 246.44  E-value: 1.25e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258    2 PSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVVF 81
Cdd:TIGR01146   1 ATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNVDHPLLKSREVKKVGILVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   82 SSNSSLCGGFNANIIKQMTHAVNEYAEtiGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGRK 161
Cdd:TIGR01146  81 TSDRGLCGGYNSNVLKRVRARAKELKA--AGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLDA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  162 FAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVeselQADHErdlesviATKQSQEYlknrgerkdegakseevkplnd 241
Cdd:TIGR01146 159 FDAGEFDELYIVYNKFVSSISQEPTVKQLLPLSA----QGPDE-------GFKFSQDY---------------------- 205

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502828258  242 nfIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGG 320
Cdd:TIGR01146 206 --IFEPDEEEILDDLLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAG 282
 
Name Accession Description Interval E-value
PRK13426 PRK13426
F0F1 ATP synthase subunit gamma; Provisional
 1-324 2.74e-177

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 237385  Cd Length: 291  Bit Score: 491.99  E-value: 2.74e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVV 80
Cdd:PRK13426   1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVERPVKRVAIVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  81 FSSNSSLCGGFNANIIKQMTHAVNEYaETIGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGR 160
Cdd:PRK13426  81 FSSNTSLCGGFNANIIKLLLQTIGEY-RTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLADKPSYEEAAALAMRLME 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 161 KFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESELQADHERdlesviatKQSQEYlknrgerkdegakseevkpln 240
Cdd:PRK13426 160 LFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQEKNAEHAG--------GVANDY--------------------- 210

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 241 dnfIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGG 320
Cdd:PRK13426 211 ---IIEPSADTVLNDLIPKLLSLKIYTALLDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGG 287


                 ....
gi 502828258 321 SVNN 324
Cdd:PRK13426 288 SMAN 291
ATP-synt pfam00231
ATP synthase;
3-321 2.35e-117

ATP synthase;


Pssm-ID: 459722  Cd Length: 285  Bit Score: 339.89  E-value: 2.35e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258    3 SLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVVFS 82
Cdd:pfam00231   1 SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPEDSHPLLERREVKKVGLIVIT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   83 SNSSLCGGFNANIIKQMTHAVNEYAEtiGRDNVEIYPIGRKVYEKARKMGLNVQGEYS-ALADHPNVHDCIEIAMELGRK 161
Cdd:pfam00231  81 SDRGLCGGFNSNVIKAARALIEELLA--EGKEVKLIVVGRKGRDYFKKRGYEVILEFTgSLGDKPTFEEAAEIADELLDA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  162 FAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESElqadherdlesviatkqsqeylknrgerkdegaksEEVKPLND 241
Cdd:pfam00231 159 FLAGEIDEVYLVYNRFVSAISQEPTVEQLLPLDPEEE-----------------------------------EEEEESLA 203

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  242 NFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGGS 321
Cdd:pfam00231 204 DYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGA 283
AtpG COG0224
FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP ...
 1-321 9.82e-117

FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP synthase, gamma subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439994  Cd Length: 288  Bit Score: 338.28  E-value: 9.82e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVV 80
Cdd:COG0224    1 MASLKEIRRRIKSVKSTQKITKAMKMVAASKLRKAQERAEAARPYAEKLREVLAALAAASPEYDHPLLEEREVKRVGLIV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  81 FSSNSSLCGGFNANIIKQMTHAVNEYAEtiGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGR 160
Cdd:COG0224   81 ITSDRGLCGGFNSNVLKAAEELIKELQA--EGKEVELIVVGRKGRDFFKRRGINVVAEFTGLSDKPSFEDAKEIAEELLD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 161 KFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVEselqadherdlesviatkqsqeylknrgerkdegAKSEEVKPLN 240
Cdd:COG0224  159 AFLAGEIDEVYLVYNRFVSAITQEPVVEQLLPLDPE----------------------------------ELEEAEWETR 204

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 241 DNFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGG 320
Cdd:COG0224  205 ADYIFEPSPEEILDALLPRYLESQIYQALLESAASEHAARMTAMKNATDNAGELIDDLTLEYNRARQAAITQELSEIVGG 284


                 .
gi 502828258 321 S 321
Cdd:COG0224  285 A 285
F1-ATPase_gamma cd12151
mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, ...
 2-321 1.26e-99

mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.


Pssm-ID: 213394  Cd Length: 282  Bit Score: 294.87  E-value: 1.26e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   2 PSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVVF 81
Cdd:cd12151    1 ASLKEIKRRIKSVKNTQKITKAMKMVAAAKLRKAQRALEAARPYAEKLEEVLQRLLSSLDDEDPPLLEKREVKKVLLIVI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  82 SSNSSLCGGFNANIIKqmthAVNEYAETIGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGRK 161
Cdd:cd12151   81 TSDRGLCGGFNSNIIK----AAEELIKEADGKEVKLIVVGKKGRDYLKRRGYNIALPFSDIGDDPTYFEAASIIEELILD 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 162 FAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESElqadherdlesviatkqsqeylknrgerkdegakSEEVKPLND 241
Cdd:cd12151  157 FLNGEIDEVYIIYNKFKSAISQEPVVEQLLPLDKEEE----------------------------------EEESEGSRS 202

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 242 NFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGGS 321
Cdd:cd12151  203 DYIFEPDPEEVLDALLPFYLASLLYRALLESLASEQAARMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282
PRK05621 PRK05621
F0F1 ATP synthase subunit gamma; Validated
 1-321 5.73e-94

F0F1 ATP synthase subunit gamma; Validated


Pssm-ID: 235535  Cd Length: 284  Bit Score: 280.46  E-value: 5.73e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSfLAAEAEAQTIYDQERPVKRAALVV 80
Cdd:PRK05621   1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISH-LASASEYDHPLLVEREVKRVGYIV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  81 FSSNSSLCGGFNANIIKQMTHAVNEYAETigRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGR 160
Cdd:PRK05621  80 VTSDRGLCGGYNSNIIKKVLELIKELEAQ--GKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLD 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 161 KFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESElqadherdlesviATKQSQEYlknrgerkdegakseevkpln 240
Cdd:PRK05621 158 AYDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEE-------------EEETSWDY--------------------- 203

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 241 dnfIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGG 320
Cdd:PRK05621 204 ---EYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGG 280


                 .
gi 502828258 321 S 321
Cdd:PRK05621 281 A 281
ATPsyn_F1gamma TIGR01146
ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in ...
 2-320 1.25e-80

ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273469  Cd Length: 286  Bit Score: 246.44  E-value: 1.25e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258    2 PSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVVF 81
Cdd:TIGR01146   1 ATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNVDHPLLKSREVKKVGILVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   82 SSNSSLCGGFNANIIKQMTHAVNEYAEtiGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGRK 161
Cdd:TIGR01146  81 TSDRGLCGGYNSNVLKRVRARAKELKA--AGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLDA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  162 FAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVeselQADHErdlesviATKQSQEYlknrgerkdegakseevkplnd 241
Cdd:TIGR01146 159 FDAGEFDELYIVYNKFVSSISQEPTVKQLLPLSA----QGPDE-------GFKFSQDY---------------------- 205

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 502828258  242 nfIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGG 320
Cdd:TIGR01146 206 --IFEPDEEEILDDLLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAG 282
PRK13423 PRK13423
F0F1 ATP synthase subunit gamma; Provisional
 1-321 1.20e-79

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 237384  Cd Length: 288  Bit Score: 244.20  E-value: 1.20e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVV 80
Cdd:PRK13423   1 MASLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGEDAHPLLVPREVKKALLVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  81 FSSNSSLCGGFNANIIKQMTHAVNEYAEtiGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMELGR 160
Cdd:PRK13423  81 VTSDRGLCGGFNSNLCKAAERFLKENKD--EFEEISLTTVGRKGREFLKNRGLIIRKNYGGVVANLTYETAALLAQELIE 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 161 KFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESElqadherdlesviatkqsqeylknrgerKDEGAKSEevkpln 240
Cdd:PRK13423 159 GYLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPEA----------------------------ADDEYLPE------ 204

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 241 dnFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIVGG 320
Cdd:PRK13423 205 --YIYEPSRDALLAELLPKHVEVQIYRALLESVASEHGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSG 282


                 .
gi 502828258 321 S 321
Cdd:PRK13423 283 A 283
PRK13425 PRK13425
F0F1 ATP synthase subunit gamma; Provisional
 1-321 3.17e-58

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 139564  Cd Length: 291  Bit Score: 189.25  E-value: 3.17e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLA-AEAEAQTIYDQERPVKRAALV 79
Cdd:PRK13425   1 MPTLKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAkVDTSLNPLLSPRSEVNKVLVI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  80 VFSSNSSLCGGFNANIIKQMTHAVNE-YAETIGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMEL 158
Cdd:PRK13425  81 LITSDRGLCGAFNTNIIKLAQKVIHEdYAALHAKGGVSMICAGTRGFDFFRKRGYNIVKGYPGVFQNLDFSVAKEIAETA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 159 GRKFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVEselqadherdlesviatkqsqeylknrgERKDEGAkseevkp 238
Cdd:PRK13425 161 SGMYLRGEVDKVVVVYNEFKSVLAPNLKSEVLLPITPE----------------------------KPGAEGG------- 205

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 239 lnDNFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIV 318
Cdd:PRK13425 206 --SDYIYEPSPAAIIDELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIV 283


                 ...
gi 502828258 319 GGS 321
Cdd:PRK13425 284 AGA 286
PRK14111 PRK14111
F0F1 ATP synthase subunit gamma; Provisional
 1-321 5.45e-58

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184515  Cd Length: 290  Bit Score: 188.47  E-value: 5.45e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLA---AEAEAQTIYDQERPVKRAA 77
Cdd:PRK14111   1 MPSTREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTArtvGAARVGPLLEKRPTVKRVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  78 LVVFSSNSSLCGGFNANIIKQMTHAVNEyaETIGRDNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAME 157
Cdd:PRK14111  81 LILVTPDRGLAGSLNANVLRRAIRFITD--ERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGDAPKLEAILPVATS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 158 LGRKFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDveselqADHERDLESViatkqsqeylknrgerkdegakseevk 237
Cdd:PRK14111 159 AINGFQSGKYDEVYVLYSEFINTLVQRPTIKQLLPIE------PPEISTTTVV--------------------------- 205

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 238 plndNFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDI 317
Cdd:PRK14111 206 ----DYTYEPSPEEVLRALLPRFVEVQLYQAVLESIASEHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEI 281


                 ....
gi 502828258 318 VGGS 321
Cdd:PRK14111 282 ASGA 285
PRK13424 PRK13424
F0F1 ATP synthase subunit gamma; Provisional
 1-321 7.27e-58

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 172047  Cd Length: 291  Bit Score: 188.42  E-value: 7.27e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLA-AEAEAQTIYDQERPVKRAALV 79
Cdd:PRK13424   1 MPSLKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASrADSSAHPLLEVREEIKTCGIV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  80 VFSSNSSLCGGFNANIIKQ-MTHAVNEYAEtiGRDnVEIYPIGRKVYEKARKMGLNVqgeYSALADHPNVHDcIEIAMEL 158
Cdd:PRK13424  81 LITSDRGLCGSFNANLINAaLKLAKQKTAE--GKT-VKFYCVGKKGRDAIRKTDFEI---VTAYADQMTSFD-FQLANSI 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 159 GRK----FAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESElqadherdlesviatkqsqeylknrgERKDEGAKSE 234
Cdd:PRK13424 154 GLEvidgYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEA--------------------------EEEEAGASSE 207

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 235 evkplndnFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSEL 314
Cdd:PRK13424 208 --------YIYEPSVEGLLAELLPRFIKVQIYRGLLDTSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITREL 279


                 ....*..
gi 502828258 315 LDIVGGS 321
Cdd:PRK13424 280 MDIVGGA 286
PRK13427 PRK13427
F0F1 ATP synthase subunit gamma; Provisional
 1-321 1.32e-49

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 172049  Cd Length: 289  Bit Score: 167.04  E-value: 1.32e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYdQERP--VKRAAL 78
Cdd:PRK13427   1 MATPREIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEGVVHSPY-LRRPekIRTVAL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  79 VVFSSNSSLCGGFNANIIKQMTHAVNEYaETIGRdNVEIYPIGRKVYEKARKMGLNVQGEYSALADHPNVHDCIEIAMEL 158
Cdd:PRK13427  80 LIITANRGLCGGFNSNLNRMAKARIAEL-KKKGV-NVELHIVGKKGISFFKFAGEKAEKTYTHIDDKSGYKEAEELANLF 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 159 GRKFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVEselqadherdlesviatkqsqeylknrgERKDEGAkseevkp 238
Cdd:PRK13427 158 MERFANESVDAVEIASTVYYSAASQKPETTRVLPLEPP----------------------------TAAAEGS------- 202

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 239 LNDNFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDIV 318
Cdd:PRK13427 203 VQDDVVYEPSPEAILESLLPLVVKTAFLKAILEANASEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIV 282


                 ...
gi 502828258 319 GGS 321
Cdd:PRK13427 283 GGA 285
PRK14110 PRK14110
F0F1 ATP synthase subunit gamma; Provisional
 1-318 4.77e-42

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184514  Cd Length: 291  Bit Score: 147.22  E-value: 4.77e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSL--KEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPY-EELLEHILKSFLAAEAEAQTIYDQeRPVKRAA 77
Cdd:PRK14110   1 MAKLspRDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYsEKLYELISDLAAHIDRESHPLLER-REEKNVD 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  78 LVVFSSNSSLCGGFNANIIKQMTHAVNEYAETigRDNVEIYPIGRKVYEKARKMGLNVQGEYSAL-ADHPNVHDCIEIAM 156
Cdd:PRK14110  80 LVIITADRGLAGAFNSNVIKTAERLIQEKQSE--GVRVNLILIGRKGVQYFSKRGYNIIKSYEDVfRKEINFSVVKEVGG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 157 ELGRKFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIDVESELQadherdlesviatkqsqeylknrgerkdegaKSEEV 236
Cdd:PRK14110 158 ILASRYIEEETDAVYLINNEMITRATYKPKVRKFLPFEVEAQEK-------------------------------KLDEL 206

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 237 KPLNdnfiVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLD 316
Cdd:PRK14110 207 SVYN----IEVSEEEFLDKLLQLYLNYQLYRALVESNAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELID 282


                 ..
gi 502828258 317 IV 318
Cdd:PRK14110 283 IV 284
PRK13422 PRK13422
F0F1 ATP synthase subunit gamma; Provisional
 1-321 1.39e-33

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184046  Cd Length: 298  Bit Score: 125.16  E-value: 1.39e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258   1 MPSLKEIKGRIASVNSTRKITSAMKMVASSKLHHAQVAIQNMLPYEELLEHILKSFLAAEAEAQTIYDQERPVKRAALVV 80
Cdd:PRK13422   1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNPYLFDRDVKRVGYIV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258  81 FSSNSSLCGGFNANIIKQMTHAVNEYAETigRDNVEIYPIGRKV---YEKARKMGLNVQGEYSALADHPNVHDCIEIAME 157
Cdd:PRK13422  81 TSTDRGLCGGLNINLFKHVLKEIKNNIED--RVGVDVCVIGSKAenfFAKLKDVNIVATAHYNDKDKEGSIRAIGGAVKV 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 158 LGRKFAQGEIDKVELIYHHFKSAGSQVLTRKTFLPIdveselqadheRDLesviatkQSQEYLKNRGERKDEGakseevk 237
Cdd:PRK13422 159 MLDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPI-----------QDI-------FSAEEIKANKEKATKG------- 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502828258 238 plNDNFIVEPDMNCVLSLLMPKLAHLMLYTALLDSNASEHAARMVAMQTATDNADELLRQLNLQYNKSRQQAITSELLDI 317
Cdd:PRK13422 214 --HWDYIYERDIEEVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEI 291


                 ....
gi 502828258 318 VGGS 321
Cdd:PRK13422 292 CSGA 295
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH