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Conserved domains on  [gi|502749213|ref|WP_012984197|]
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NAD(P)H-dependent oxidoreductase subunit E [Dehalococcoides mccartyi]

Protein Classification

complex I 24 kDa subunit family protein( domain architecture ID 11112961)

complex I 24 kDa subunit family protein is a thioredoxin-like ferredoxin subunit of an NADH dehydrogenase is involved in the reversible oxidation of molecular hydrogen using NADH or NADPH as electron donor or acceptor; such as bacterial NADH-quinone oxidoreductase subunit E (NuoE) and eukaryotic NADH-ubiquinone oxidoreductase 24 kDa subunit

EC:  7.1.1.-
Gene Ontology:  GO:0051537|GO:0016491
PubMed:  15916556|30277212

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
2Fe-2S_thioredx pfam01257
Thioredoxin-like [2Fe-2S] ferredoxin;
12-153 8.88e-61

Thioredoxin-like [2Fe-2S] ferredoxin;


:

Pssm-ID: 460139  Cd Length: 145  Bit Score: 184.22  E-value: 8.88e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213   12 VLSLYEAKKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRGTACHVMGAER 91
Cdd:pfam01257   4 IIAKYPRKRSALIPILHLAQEEYGYLPPEAIEYVAELLGIPPARVYEVATFYTMFSLKPVGKYHIQVCTGTPCHLRGSDE 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502749213   92 LLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGKKK 153
Cdd:pfam01257  84 ILEALEKKLGIKPGETTPDGKFTLEEVECLGACDNAPVMQINDDYYGDLTPEKVDEILEELK 145
 
Name Accession Description Interval E-value
2Fe-2S_thioredx pfam01257
Thioredoxin-like [2Fe-2S] ferredoxin;
12-153 8.88e-61

Thioredoxin-like [2Fe-2S] ferredoxin;


Pssm-ID: 460139  Cd Length: 145  Bit Score: 184.22  E-value: 8.88e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213   12 VLSLYEAKKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRGTACHVMGAER 91
Cdd:pfam01257   4 IIAKYPRKRSALIPILHLAQEEYGYLPPEAIEYVAELLGIPPARVYEVATFYTMFSLKPVGKYHIQVCTGTPCHLRGSDE 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502749213   92 LLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGKKK 153
Cdd:pfam01257  84 ILEALEKKLGIKPGETTPDGKFTLEEVECLGACDNAPVMQINDDYYGDLTPEKVDEILEELK 145
NuoE COG1905
NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) [Energy production and conversion]; ...
 16-154 4.93e-58

NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441509  Cd Length: 159  Bit Score: 177.64  E-value: 4.93e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213  16 YEAKKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRGTACHVMGAERLLRN 95
Cdd:COG1905   21 YPRKRSALIPILHLVQEEFGYLPEEAIEEIAEALGLPPAEVYGVATFYSMFRLKPVGKHVIRVCTGTACHLRGAEELLEA 100

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 502749213  96 IEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGKKKR 154
Cdd:COG1905  101 LEEKLGIKPGETTADGKFTLEEVECLGACGLAPVMMVNDDVYGRLTPEKVDEILDELRA 159
PRK07539 PRK07539
NADH-quinone oxidoreductase subunit NuoE;
16-153 3.81e-44

NADH-quinone oxidoreductase subunit NuoE;


Pssm-ID: 181024  Cd Length: 154  Bit Score: 142.22  E-value: 3.81e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213  16 YEAKKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRGTACHVMGAERLLRN 95
Cdd:PRK07539  17 YPRPRSAVIPALKIVQEQRGWVPDEAIEAVADYLGMPAIDVEEVATFYSMIFRQPVGRHVIQVCTSTPCWLRGGEAILAA 96

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502749213  96 IEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGKKK 153
Cdd:PRK07539  97 LKKKLGIKPGETTADGRFTLLEVECLGACDNAPVVMINDDTYEDLTPEKIDELLDELK 154
TRX_Fd_NuoE cd03064
TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E ...
 74-151 6.56e-32

TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] cluster and also binds the NADH substrate and FMN.


Pssm-ID: 239362 [Multi-domain]  Cd Length: 80  Bit Score: 108.76  E-value: 6.56e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502749213  74 HRVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGK 151
Cdd:cd03064    2 HVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMINDDVYGRLTPEKVDAILEA 79
 
Name Accession Description Interval E-value
2Fe-2S_thioredx pfam01257
Thioredoxin-like [2Fe-2S] ferredoxin;
12-153 8.88e-61

Thioredoxin-like [2Fe-2S] ferredoxin;


Pssm-ID: 460139  Cd Length: 145  Bit Score: 184.22  E-value: 8.88e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213   12 VLSLYEAKKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRGTACHVMGAER 91
Cdd:pfam01257   4 IIAKYPRKRSALIPILHLAQEEYGYLPPEAIEYVAELLGIPPARVYEVATFYTMFSLKPVGKYHIQVCTGTPCHLRGSDE 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 502749213   92 LLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGKKK 153
Cdd:pfam01257  84 ILEALEKKLGIKPGETTPDGKFTLEEVECLGACDNAPVMQINDDYYGDLTPEKVDEILEELK 145
NuoE COG1905
NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) [Energy production and conversion]; ...
 16-154 4.93e-58

NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441509  Cd Length: 159  Bit Score: 177.64  E-value: 4.93e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213  16 YEAKKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRGTACHVMGAERLLRN 95
Cdd:COG1905   21 YPRKRSALIPILHLVQEEFGYLPEEAIEEIAEALGLPPAEVYGVATFYSMFRLKPVGKHVIRVCTGTACHLRGAEELLEA 100

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 502749213  96 IEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGKKKR 154
Cdd:COG1905  101 LEEKLGIKPGETTADGKFTLEEVECLGACGLAPVMMVNDDVYGRLTPEKVDEILDELRA 159
PRK07539 PRK07539
NADH-quinone oxidoreductase subunit NuoE;
16-153 3.81e-44

NADH-quinone oxidoreductase subunit NuoE;


Pssm-ID: 181024  Cd Length: 154  Bit Score: 142.22  E-value: 3.81e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213  16 YEAKKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRGTACHVMGAERLLRN 95
Cdd:PRK07539  17 YPRPRSAVIPALKIVQEQRGWVPDEAIEAVADYLGMPAIDVEEVATFYSMIFRQPVGRHVIQVCTSTPCWLRGGEAILAA 96

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 502749213  96 IEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGKKK 153
Cdd:PRK07539  97 LKKKLGIKPGETTADGRFTLLEVECLGACDNAPVVMINDDTYEDLTPEKIDELLDELK 154
PRK07571 PRK07571
bidirectional hydrogenase complex protein HoxE; Reviewed
 16-144 5.01e-44

bidirectional hydrogenase complex protein HoxE; Reviewed


Pssm-ID: 236053  Cd Length: 169  Bit Score: 142.58  E-value: 5.01e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213  16 YEAKKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRGTACHVMGAERLLRN 95
Cdd:PRK07571  31 NQYRQDALIEVLHKAQELFGYLERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSGEHTCVVCTGTACYVKGSAAILED 110

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 502749213  96 IEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSS 144
Cdd:PRK07571 111 LENELGIKAGETTADGKLSLLTARCLGACGIAPAVVFDGKVAGKQTPES 159
PRK05988 PRK05988
formate dehydrogenase subunit gamma; Validated
 23-154 2.17e-34

formate dehydrogenase subunit gamma; Validated


Pssm-ID: 180339  Cd Length: 156  Bit Score: 117.75  E-value: 2.17e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213  23 LIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIHRVHVCRGTACHVMGAERLLRNIEKRLGI 102
Cdd:PRK05988  25 LLPILHAIQDEFGYVPEDAVPVIAEALNLSRAEVHGVITFYHDFRTHPPGRHVLKLCRAEACQAMGGDALAAHAKARLGI 104

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 502749213 103 KAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGKKKR 154
Cdd:PRK05988 105 DFHQTTADGAVTLEPVYCLGLCACSPAAMLDGEVHGRLDPQRLDALLAEARR 156
TRX_Fd_NuoE cd03064
TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E ...
 74-151 6.56e-32

TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] cluster and also binds the NADH substrate and FMN.


Pssm-ID: 239362 [Multi-domain]  Cd Length: 80  Bit Score: 108.76  E-value: 6.56e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502749213  74 HRVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILGK 151
Cdd:cd03064    2 HVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMINDDVYGRLTPEKVDAILEA 79
TRX_Fd_NuoE_FDH_gamma cd03081
TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E ...
 74-150 6.70e-21

TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidation of formate.


Pssm-ID: 239379  Cd Length: 80  Bit Score: 80.89  E-value: 6.70e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 502749213  74 HRVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRILG 150
Cdd:cd03081    2 HVLKLCRAEACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMIDGEVHGRVDPEKFDALLA 78
TRX_Fd_family cd02980
Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX ...
 74-149 4.74e-20

Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.


Pssm-ID: 239278 [Multi-domain]  Cd Length: 77  Bit Score: 78.44  E-value: 4.74e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 502749213  74 HRVHVCRGTACHVMGAERLLRNIEKRLGIKAGettiDNGISLDTINCAGICGLAPTLEV--DGKLYTRLNGSSLNRIL 149
Cdd:cd02980    1 HHILVCTGTACGLRGAEELLEALEKELGIRGG----DGRVTVERVGCLGACGLAPVVVVypDGVWYGRVTPEDVEEIV 74
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
23-149 3.93e-14

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 68.29  E-value: 3.93e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 502749213  23 LIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPG-IHRVHVCRGTACHVMGAERLLRNIEKRLG 101
Cdd:PRK12373  39 VIPLLMRAQEQEGWVTRAAIEKVADMLDMAYIRVLEVATFYTQFQLQPVGtRAHIQVCGTTPCMLRGSEALMAVCKSKIH 118

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 502749213 102 IKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRIL 149
Cdd:PRK12373 119 AHPHELNADGTLSWEEVECLGACVNAPMVQIGKDYYEDLTPERLEEII 166
TRX_Fd_NuoE_hoxF cd03083
TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E ...
 74-148 3.44e-08

TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved in the electron transport chain during the NAD-dependent oxidation of hydrogen through its NuoF domain. The NuoE-like domain of hoxF contains only one conserved cysteine in its putative active site, compared to four cysteines in NuoE, and may have lost the ability to bind [2Fe-2S] clusters.


Pssm-ID: 239381  Cd Length: 80  Bit Score: 48.17  E-value: 3.44e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502749213  74 HRVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLNGSSLNRI 148
Cdd:cd03083    2 YRIYLSDSITDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTGLCDQGPALLINNRVFTRLTPGRIDQI 76
TRX_Fd_NuoE_W_FDH_beta cd03082
TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E ...
 76-132 1.37e-04

TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependent oxidation of formate.


Pssm-ID: 239380 [Multi-domain]  Cd Length: 72  Bit Score: 38.15  E-value: 1.37e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 502749213  76 VHVCRGTACHVMGAERLLRNIEKRLGikagettiDNGISLDTINCAGICGLAPTLEV 132
Cdd:cd03082    4 VRVCDSLSCAMAGAEELLAALEAGLG--------PEGVRVVRAPCVGRCERAPAALV 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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