NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|501269569|ref|WP_012312587|]
View 

DUF2076 domain-containing protein [Pseudomonas putida]

Protein Classification

DUF2076 domain-containing protein( domain architecture ID 10007341)

DUF2076 domain-containing protein similar to Buchnera aphidicola protein BU181 (also known as Yba2)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
COG3416 COG3416
Uncharacterized conserved protein, DUF2076 domain [Function unknown];
1-237 1.01e-55

Uncharacterized conserved protein, DUF2076 domain [Function unknown];


:

Pssm-ID: 442642 [Multi-domain]  Cd Length: 237  Bit Score: 178.68  E-value: 1.01e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569   1 MNTEEQTLIDGLFGRIKQAEdpSQPRDAQAQARIEEHLREQPAAPYYMAQAILVQEAVLKRLDEQNKQLEAELKQARAQv 80
Cdd:COG3416    1 MTPEERQLIDGLFDRLKQAE--GQPRDPEAEALIAEALRQQPAAPYYMAQTILVQEAALKQAQQRIQELEAQLAQLQQQ- 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569  81 easrtsstSSTSSGGFLSSIFGaSGRNPQPAQPSQQPQRPATPVASAGGWRE--PSAPGFSQPQAAQPGFGAApargGAS 158
Cdd:COG3416   78 --------QPQSSGGFLSGLFG-GGQRPPPAPQPSQPGPQQQPAPPSGPWGQaaPQQPGYGQPQYGQPAAGPS----GGG 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569 159 SFLGGAMQTAAGVAGGVLLAQGISSLFNHHSQPEEVVEVIKEEPAPASDTAGWNDEGAQSQVADNG-GWGADQGGFADSD 237
Cdd:COG3416  145 GFLGGALQTAAGVAGGVLLANALTGMFSGSHPGEGVGGGGGEPGGAGEETVINNYYGDDAGGDNNDaGFQDNDYDASGDD 224
 
Name Accession Description Interval E-value
COG3416 COG3416
Uncharacterized conserved protein, DUF2076 domain [Function unknown];
1-237 1.01e-55

Uncharacterized conserved protein, DUF2076 domain [Function unknown];


Pssm-ID: 442642 [Multi-domain]  Cd Length: 237  Bit Score: 178.68  E-value: 1.01e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569   1 MNTEEQTLIDGLFGRIKQAEdpSQPRDAQAQARIEEHLREQPAAPYYMAQAILVQEAVLKRLDEQNKQLEAELKQARAQv 80
Cdd:COG3416    1 MTPEERQLIDGLFDRLKQAE--GQPRDPEAEALIAEALRQQPAAPYYMAQTILVQEAALKQAQQRIQELEAQLAQLQQQ- 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569  81 easrtsstSSTSSGGFLSSIFGaSGRNPQPAQPSQQPQRPATPVASAGGWRE--PSAPGFSQPQAAQPGFGAApargGAS 158
Cdd:COG3416   78 --------QPQSSGGFLSGLFG-GGQRPPPAPQPSQPGPQQQPAPPSGPWGQaaPQQPGYGQPQYGQPAAGPS----GGG 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569 159 SFLGGAMQTAAGVAGGVLLAQGISSLFNHHSQPEEVVEVIKEEPAPASDTAGWNDEGAQSQVADNG-GWGADQGGFADSD 237
Cdd:COG3416  145 GFLGGALQTAAGVAGGVLLANALTGMFSGSHPGEGVGGGGGEPGGAGEETVINNYYGDDAGGDNNDaGFQDNDYDASGDD 224
DUF2076 pfam09849
Uncharacterized protein conserved in bacteria (DUF2076); This domain, found in various ...
1-237 7.57e-49

Uncharacterized protein conserved in bacteria (DUF2076); This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins.


Pssm-ID: 430876  Cd Length: 263  Bit Score: 161.83  E-value: 7.57e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569    1 MNTEEQTLIDGLFGRIKQAEdpSQPRDAQAQARIEEHLREQPAAPYYMAQAILVQEAVLKRLDEQNKQLEAELKQARAQv 80
Cdd:pfam09849   1 MTPQERQLIDGLFDRLRQAE--NAPRDPEAEALIAQGLRRQPDAPYYLAQTVLVQEQALKAAQARIQELEAQLQQLQQQ- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569   81 easRTSSTSSTSSGGFLSSIFGaSGRNPQPAQPSQQPQRPATPVASAGGWREPSAPGFSQPQAAQPGFGAAPAR-----G 155
Cdd:pfam09849  78 ---QQQAQAQPSSGGFLGGLFG-GGSQSRPPPPPQARPAWPAGQAPGQPQPYPGQPGYAQQGQPQYGQPAQPPRgpwgpG 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569  156 GASSFLGGAMQTAAGVAGGVLLAQGISSLFNHHSQPEEVVEVIKEEPA------PASDTAGWNDEGAQSQVADNGGWGAD 229
Cdd:pfam09849 154 GGGGFLGGALQTAAGVAGGVLLAQGIESLFSGGHGGFGGGGGSQPAGGetvinnYYSSGGSLADDAGDADNGSADDGGDD 233

                  ....*...
gi 501269569  230 QGGFADSD 237
Cdd:pfam09849 234 DSSGDNNA 241
 
Name Accession Description Interval E-value
COG3416 COG3416
Uncharacterized conserved protein, DUF2076 domain [Function unknown];
1-237 1.01e-55

Uncharacterized conserved protein, DUF2076 domain [Function unknown];


Pssm-ID: 442642 [Multi-domain]  Cd Length: 237  Bit Score: 178.68  E-value: 1.01e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569   1 MNTEEQTLIDGLFGRIKQAEdpSQPRDAQAQARIEEHLREQPAAPYYMAQAILVQEAVLKRLDEQNKQLEAELKQARAQv 80
Cdd:COG3416    1 MTPEERQLIDGLFDRLKQAE--GQPRDPEAEALIAEALRQQPAAPYYMAQTILVQEAALKQAQQRIQELEAQLAQLQQQ- 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569  81 easrtsstSSTSSGGFLSSIFGaSGRNPQPAQPSQQPQRPATPVASAGGWRE--PSAPGFSQPQAAQPGFGAApargGAS 158
Cdd:COG3416   78 --------QPQSSGGFLSGLFG-GGQRPPPAPQPSQPGPQQQPAPPSGPWGQaaPQQPGYGQPQYGQPAAGPS----GGG 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569 159 SFLGGAMQTAAGVAGGVLLAQGISSLFNHHSQPEEVVEVIKEEPAPASDTAGWNDEGAQSQVADNG-GWGADQGGFADSD 237
Cdd:COG3416  145 GFLGGALQTAAGVAGGVLLANALTGMFSGSHPGEGVGGGGGEPGGAGEETVINNYYGDDAGGDNNDaGFQDNDYDASGDD 224
DUF2076 pfam09849
Uncharacterized protein conserved in bacteria (DUF2076); This domain, found in various ...
1-237 7.57e-49

Uncharacterized protein conserved in bacteria (DUF2076); This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins.


Pssm-ID: 430876  Cd Length: 263  Bit Score: 161.83  E-value: 7.57e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569    1 MNTEEQTLIDGLFGRIKQAEdpSQPRDAQAQARIEEHLREQPAAPYYMAQAILVQEAVLKRLDEQNKQLEAELKQARAQv 80
Cdd:pfam09849   1 MTPQERQLIDGLFDRLRQAE--NAPRDPEAEALIAQGLRRQPDAPYYLAQTVLVQEQALKAAQARIQELEAQLQQLQQQ- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569   81 easRTSSTSSTSSGGFLSSIFGaSGRNPQPAQPSQQPQRPATPVASAGGWREPSAPGFSQPQAAQPGFGAAPAR-----G 155
Cdd:pfam09849  78 ---QQQAQAQPSSGGFLGGLFG-GGSQSRPPPPPQARPAWPAGQAPGQPQPYPGQPGYAQQGQPQYGQPAQPPRgpwgpG 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501269569  156 GASSFLGGAMQTAAGVAGGVLLAQGISSLFNHHSQPEEVVEVIKEEPA------PASDTAGWNDEGAQSQVADNGGWGAD 229
Cdd:pfam09849 154 GGGGFLGGALQTAAGVAGGVLLAQGIESLFSGGHGGFGGGGGSQPAGGetvinnYYSSGGSLADDAGDADNGSADDGGDD 233

                  ....*...
gi 501269569  230 QGGFADSD 237
Cdd:pfam09849 234 DSSGDNNA 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH