|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
568-1369 |
4.19e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 107.09 E-value: 4.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 568 LAKLLSDDARAdESAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRFAACLEDKEQTYAHNYF-LAARGCRQ 646
Cdd:TIGR02917 62 LGKIYLALGDY-AAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRgLAYLGLGQ 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 647 TSVALQLLKQRWSRDQKRSarpvYA-LATAYDHL--DRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALL 723
Cdd:TIGR02917 141 LELAQKSYEQALAIDPRSL----YAkLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 724 KEA-KAKTAHSRWLSTAATLAQYEYKPDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTFPDH-- 800
Cdd:TIGR02917 217 RKAiALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYlp 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 801 ----AGLHHlwYQQvqeGDAVVAEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGY 876
Cdd:TIGR02917 297 alllAGASE--YQL---GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 877 LWVLNKDIPMAKTAFKSALQR-----SVDSSRAISELidicqSTEEQKDVIdfifhefqkqvitgdglftfyqyartvlt 951
Cdd:TIGR02917 372 AYLALGDFEKAAEYLAKATELdpenaAARTQLGISKL-----SQGDPSEAI----------------------------- 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 952 pEDFDQRIQevhaARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTAL 1031
Cdd:TIGR02917 418 -ADLETAAQ----LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1032 RINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPsydwgwnr 1111
Cdd:TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-------- 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1112 lqewaqtlerphltadiareltvtrsGEAQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYE 1191
Cdd:TIGR02917 565 --------------------------QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1192 DAIATC-SPPEVDDDVPSFLgARAAWIQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVR 1270
Cdd:TIGR02917 619 KAVSSFkKLLALQPDSALAL-LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1271 LAPQECIAWGYQGEAKQKTGDRLGAKADFRKAFELDPEYSFAGLSLFDLELEGLETEAAANTLARLKEHCNDEFVLARAV 1350
Cdd:TIGR02917 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777
|
810
....*....|....*....
gi 501113660 1351 QLAVRQNDLNTATQTLAQL 1369
Cdd:TIGR02917 778 ELYLAQKDYDKAIKHYQTV 796
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
973-1270 |
7.84e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 85.55 E-value: 7.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 973 WTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDRTN 1052
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1053 ALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPsydwgwnrlqewaqtlerphltadiarel 1132
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP----------------------------- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1133 tvtrsGEAQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSppEVDDDVPSFLGA 1212
Cdd:COG2956 142 -----ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE--RALEQDPDYLPA 214
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1213 --RAAWIQYQQGQFDEAIQAMKTILAKDPDYfAGWRILADWYRQLDHLDAYLPTAQQLVR 1270
Cdd:COG2956 215 lpRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1043-1336 |
5.04e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 5.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1043 QLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSydwgwnrlqewaqtlerp 1122
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------------------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1123 hltadiareltvtrsgEAQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSPPEV 1202
Cdd:COG2956 75 ----------------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1203 DDDVPSFLGARAAWIQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQ 1282
Cdd:COG2956 139 LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 501113660 1283 GEAKQKTGDRLGAKADFRKAFELDPEYSFAgLSLFDLELEGLETEAAANTLARL 1336
Cdd:COG2956 219 AELYEKLGDPEEALELLRKALELDPSDDLL-LALADLLERKEGLEAALALLERQ 271
|
|
| Peptidase_C39_2 |
pfam13529 |
Peptidase_C39 like family; |
317-414 |
2.54e-15 |
|
Peptidase_C39 like family;
Pssm-ID: 379241 [Multi-domain] Cd Length: 139 Bit Score: 74.41 E-value: 2.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 317 TCAPATLTTLCAYWGTTVDHQQLADSICYN-------------------GTSSYSERDWASQQGWAVC-EFTVTWDSIIQ 376
Cdd:pfam13529 14 GCGPTSLAMVLSYLGITVTQDELAKEIGTNpdgnpntgfvgnpydksgyGVYNPPIVALAEKYGLKVTdITGSSFDEVIR 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 501113660 377 LIDAGIPFTLSTVEA--------TSAHLQAVIGYDSRLQTLIIRDP 414
Cdd:pfam13529 94 LLDAGIPVVVSTTTFgplnyyftSSGHLVVIVGYDDKGDYVYVNDP 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
670-1376 |
2.68e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.67 E-value: 2.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 670 YALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEAKAKTAHSR--WLSTAATLAQYEY 747
Cdd:TIGR02917 60 FLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAaeLLALRGLAYLGLG 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 748 KPDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTFPDHAGLHHLW--YQQVQeGDAVVAEQVLRR 825
Cdd:TIGR02917 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKgdLLLSL-GNIELALAAYRK 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 826 LVDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRSVD--SSR 903
Cdd:TIGR02917 219 AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEylPAL 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 904 AISELIDICQSTEEQ-----KDVIDFIFHEFQKQVITgdglftfyqyARTVLTPEDFDQRIQEVHAA---RPDLWQVWTV 975
Cdd:TIGR02917 299 LLAGASEYQLGNLEQayqylNQILKYAPNSHQARRLL----------ASIQLRLGRVDEAIATLSPAlglDPDDPAALSL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 976 RSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDRTNALD 1055
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFD 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1056 KCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSydwgwnrlqewaqtlerpHLTADIareltvt 1135
Cdd:TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD------------------FFPAAA------- 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1136 rsgeaqswlRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSPPEVDDdvPSFLGARAA 1215
Cdd:TIGR02917 504 ---------NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALA 572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1216 WIQY--QQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRL 1293
Cdd:TIGR02917 573 LAQYylGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA 652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1294 GAKADFRKAFELDPEYSFAGLSLFDLELEGLETEAAANTLARLKE-HCNDEFVLARAVQLAVRQNDLNTATQTL-AQLCI 1371
Cdd:TIGR02917 653 KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKqHPKAALGFELEGDLYLRQKDYPAAIQAYrKALKR 732
|
....*
gi 501113660 1372 YPSDQ 1376
Cdd:TIGR02917 733 APSSQ 737
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1140-1403 |
3.37e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.77 E-value: 3.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1140 AQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSppEVDDDVPSFLGARA--AWI 1217
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQ--KLLERDPDRAEALLelAQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1218 QYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRLGAKA 1297
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1298 DFRKAFELDPEYSFAGLSLFDLELEGLETEAAANTLAR-LKEHCNDEFVLARAVQLAVRQNDLNTATQTLAQLC-IYPSD 1375
Cdd:COG2956 166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERaLEQDPDYLPALPRLAELYEKLGDPEEALELLRKALeLDPSD 245
|
250 260
....*....|....*....|....*...
gi 501113660 1376 QEwpLEAAVESMIAANWTTEAQTILFDA 1403
Cdd:COG2956 246 DL--LLALADLLERKEGLEAALALLERQ 271
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
684-1240 |
3.57e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 78.20 E-value: 3.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 684 EAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEAKAKTAHSRW-LSTAATLAQYEYKPDQALDLWQQLINA 762
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQaRRLLASIQLRLGRVDEAIATLSPALGL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 763 DPLDIEA-NRAVSQLLAEQEGVTAAREFIAATCSTfPDHAGLH-HLWYQQVQEGDAVVAEQVLRRLVDINPKDAWSWRQI 840
Cdd:TIGR02917 359 DPDDPAAlSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARtQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 841 AWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRSVDSSRAISELIDIcqstEEQKD 920
Cdd:TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI----DIQEG 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 921 VIDFIFHEFQKQVITGDG-LFTFYQYARTVLT---PEDFDQRIQEVHAARPDLWQVWTVRSRQLLSSDRTTEALAIAVEA 996
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPKnLRAILALAGLYLRtgnEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 997 SERFPLLPRVW----------------------------------VDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQ 1042
Cdd:TIGR02917 594 ADAAPDSPEAWlmlgraqlaagdlnkavssfkkllalqpdsalalLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1043 QLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSydwgwnrlqewAQTLERP 1122
Cdd:TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-----------SQNAIKL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1123 HL-------TADIARELT----------VTRSGEAQSWLRLAEYLTGD---DTLDERiaAVDQAIALNPRCWDAYDLK-A 1181
Cdd:TIGR02917 743 HRallasgnTAEAVKTLEawlkthpndaVLRTALAELYLAQKDYDKAIkhyQTVVKK--APDNAVVLNNLAWLYLELKdP 820
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 501113660 1182 KVLAAAERyEDAIATCSPPEVDDdvpsflgarAAWIQYQQGQFDEAIQAMKTILAKDPD 1240
Cdd:TIGR02917 821 RALEYAER-ALKLAPNIPAILDT---------LGWLLVEKGEADRALPLLRKAVNIAPE 869
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
944-1162 |
6.84e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 76.96 E-value: 6.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 944 QYARTVLTPEDFDQRIQEVHAARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAE 1023
Cdd:COG3914 52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1024 EQALQTALRINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDP 1103
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 501113660 1104 SYDWGWNRLQEWAQTLERPHLTADIARELTVTRSGEAQSWLRLAEYLTGDDTLDERIAA 1162
Cdd:COG3914 212 DNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALA 270
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1139-1369 |
1.09e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 72.73 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1139 EAQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSPP-EVDDDVPSFLGARAaWI 1217
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAlELDPDDAEALNNLG-LA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1218 QYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRLGAKA 1297
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 501113660 1298 DFRKAFELDPEYSFAGLSLFDLELEGLETEAAANTLARLKEHCNDEFVLARAVQLAVRQNDLNTATQTLAQL 1369
Cdd:COG0457 166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1167-1369 |
1.91e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 71.96 E-value: 1.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1167 IALNPRCWDAYDLKAKVLAAAERYEDAIATCSPP-EVDDDVPSFLGARAaWIQYQQGQFDEAIQAMKTILAKDPDYFAGW 1245
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKAlELDPDDAEALYNLG-LAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1246 RILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRLGAKADFRKAFELDPEYSFAGLSLFDLELEGLE 1325
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 501113660 1326 TEAAANTLARLKEHCNDEFVLARAVQLAVRQNDLNTATQTLAQL 1369
Cdd:COG0457 160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
565-827 |
2.16e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.45 E-value: 2.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 565 WTRLAKLLSDDARADEsAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRFAACLEDKEQTY----AHNYFLA 640
Cdd:COG2956 11 WYFKGLNYLLNGQPDK-AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAllelAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 641 ARGCRQTSVALQLLKQRwsrdqKRSARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAH 720
Cdd:COG2956 90 GLLDRAEELLEKLLELD-----PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 721 ALLKEAKAKTAHSRWLSTAatLAQYEYK---PDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTF 797
Cdd:COG2956 165 EALEKALKLDPDCARALLL--LAELYLEqgdYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242
|
250 260 270
....*....|....*....|....*....|
gi 501113660 798 PDHAGLHHLWYQQVQEGDAVVAEQVLRRLV 827
Cdd:COG2956 243 PSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
998-1275 |
6.54e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.42 E-value: 6.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 998 ERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGY 1077
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1078 LADVRWKLDDCEAALQQLQKALRLDPSYDWGWNRLqewaqtlerphltadiareltvtrsgeAQSWLRLAEYltgddtlD 1157
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNL---------------------------GLALLELGRY-------D 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1158 ERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSPPEVDDDVPsFLGARAAWIQYQQGQFDEAIQAMKTILAK 1237
Cdd:COG0457 128 EAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA-LLAAALGEAALALAAAEVLLALLLALEQA 206
|
250 260 270
....*....|....*....|....*....|....*...
gi 501113660 1238 DPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQE 1275
Cdd:COG0457 207 LRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
953-1195 |
1.25e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.14 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 953 EDFDQRI---QEVHAARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQT 1029
Cdd:COG2956 22 GQPDKAIdllEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1030 ALRINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSYDWGW 1109
Cdd:COG2956 102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1110 NRLQEWAQTLERPHLTADIARELTVTRSGEAQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCwDAYDLKAKVLAAAER 1189
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEG 260
|
....*.
gi 501113660 1190 YEDAIA 1195
Cdd:COG2956 261 LEAALA 266
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1064-1291 |
1.26e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.72 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1064 ALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSYDWGWNRLQEWAQTLERPHLTADIARELTVTRSGEAQSW 1143
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1144 LRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSppEVDDDVPSFLGARA--AWIQYQQ 1221
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALR--RALALNPDFAEAYLnlGEALRRL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1222 GQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGD 1291
Cdd:COG3914 160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
597-852 |
3.87e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.60 E-value: 3.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 597 AYNYFLLANLYWSQRQFDVALDLYRfAACLEDKEQTYAHNY---FLAARGcrQTSVALQLLKQRWSRDQKRsARPVYALA 673
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLE-EALELDPETVEAHLAlgnLYRRRG--EYDRAIRIHQKLLERDPDR-AEALLELA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 674 TAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEA-KAKTAHSRWLSTAATLAQYEYKPDQA 752
Cdd:COG2956 84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLlKLGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 753 LDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTFPDHAGLHHLWYQ-QVQEGDAVVAEQVLRRLVDINP 831
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAElYEKLGDPEEALELLRKALELDP 243
|
250 260
....*....|....*....|.
gi 501113660 832 KDAwSWRQIAWQLGRQQQLEA 852
Cdd:COG2956 244 SDD-LLLALADLLERKEGLEA 263
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1137-1275 |
6.12e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.83 E-value: 6.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1137 SGEAQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSppEVDDDVPSFLGARA-- 1214
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLH--EALELDPDEPEARLnl 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501113660 1215 AWIQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQE 1275
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
964-1195 |
1.04e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.95 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 964 AARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQ 1043
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1044 LADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSYDWGWNRLQEWAQTLERPH 1123
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 501113660 1124 LTADIARELTVTRSGEAQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIA 1195
Cdd:COG0457 162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1022-1293 |
1.12e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.64 E-value: 1.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1022 AEEQALQTALRINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRL 1101
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1102 DPSYDWGWNRLQEWAQTLERPHLTADIARELTVTRSGEAQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKA 1181
Cdd:COG3914 108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1182 KVLAAAERYEDAIATCSppEVDDDVPSFLGARAAWIQYQQGQFD-EAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDA 1260
Cdd:COG3914 188 NALQDLGRLEEAIAAYR--RALELDPDNADAHSNLLFALRQACDwEVYDRFEELLAALARGPSELSPFALLYLPDDDPAE 265
|
250 260 270
....*....|....*....|....*....|...
gi 501113660 1261 YLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRL 1293
Cdd:COG3914 266 LLALARAWAQLVAAAAAPELPPPPNPRDPDRKL 298
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1069-1338 |
1.16e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.57 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1069 PLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSYDWGWNRLqewaqtlerphltadiareltvtrsgeAQSWLRLAE 1148
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL---------------------------GLAYLRLGR 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1149 YltgddtlDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCS-PPEVDDDVPSFLGARAaWIQYQQGQFDEA 1227
Cdd:COG0457 58 Y-------EEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDkALELDPDDAEALYNLG-LALLELGRYDEA 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1228 IQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRLGAKADFRKAFELDP 1307
Cdd:COG0457 130 IEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
|
250 260 270
....*....|....*....|....*....|.
gi 501113660 1308 EYSFAGLSLFDLELEGLETEAAANTLARLKE 1338
Cdd:COG0457 210 KLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1172-1309 |
1.38e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.67 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1172 RCWDAYDLKAKVLAAAERYEDAIATCspPEVDDDVPSFLGARA--AWIQYQQGQFDEAIQAMKTILAKDPDYFAGWRILA 1249
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALL--EKALELDPDNPEAFAllGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1250 DWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRLGAKADFRKAFELDPEY 1309
Cdd:COG4783 80 LALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
834-1102 |
2.02e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 66.68 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 834 AWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRSVDSSRAISELIDICQ 913
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 914 STEEQKDVIDfIFHEFQKqvITGDGLFTFYQYARTVLTPEDFDQRI---QEVHAARPDLWQVWTVRSRQLLSSDRTTEAL 990
Cdd:COG2956 88 KAGLLDRAEE-LLEKLLE--LDPDDAEALRLLAEIYEQEGDWEKAIevlERLLKLGPENAHAYCELAELYLEQGDYDEAI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 991 AIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSPl 1070
Cdd:COG2956 165 EALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP- 243
|
250 260 270
....*....|....*....|....*....|..
gi 501113660 1071 EAYLHGYLADVRWKLDDCEAALQQLQKALRLD 1102
Cdd:COG2956 244 SDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
971-1105 |
3.87e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 3.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 971 QVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDR 1050
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 501113660 1051 TNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSY 1105
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1031-1306 |
4.00e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.03 E-value: 4.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1031 LRINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSYDWGWN 1110
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1111 RLqewaqtlerphltadiareltvtrsgeAQSWLRLAEYltgddtlDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERY 1190
Cdd:COG0457 81 NL---------------------------GLALQALGRY-------EEALEDYDKALELDPDDAEALYNLGLALLELGRY 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1191 EDAIATCSP-PEVDDDVPSFLGARAAwIQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLV 1269
Cdd:COG0457 127 DEAIEAYERaLELDPDDADALYNLGI-ALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
250 260 270
....*....|....*....|....*....|....*..
gi 501113660 1270 RLAPQECIAWGYQGEAKQKTGDRLGAKADFRKAFELD 1306
Cdd:COG0457 206 ALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1212-1338 |
4.31e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 4.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1212 ARAAWIQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGD 1291
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 501113660 1292 RLGAKADFRKAFELDPEYSFAGLSLFDLELEGLETEAAANTLARLKE 1338
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
55-323 |
4.75e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 67.71 E-value: 4.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 55 ALGAPRQRAAILLRAWRRNPADPDALYYYISTMLWRQGPLAAYRLIQ-----KHQSQFDHFTPYQQAQWLGLQAQVVLEF 129
Cdd:COG3914 12 LAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAAllalaAGEAAAAAAALLLLAALLELAALLLQAL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 130 RDFDRTDAYLQEAKILAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQ 209
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 210 ATTQL-ESGDIWAQLAALQLELGQYTQAQHSYQQYEQACPLLDKAGQSRLwsaqadiayqrgdfnqahHLAQKLTEYPYY 288
Cdd:COG3914 172 ALELDpDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL------------------FALRQACDWEVY 233
|
250 260 270
....*....|....*....|....*....|....*
gi 501113660 289 QSLAQRLLELPEGERVILPVGFvrqHHMTCAPATL 323
Cdd:COG3914 234 DRFEELLAALARGPSELSPFAL---LYLPDDDPAE 265
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
670-925 |
1.21e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 64.37 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 670 YALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEAKAKTAHSRWLstAATLAQYEYK- 748
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA--LLELAQDYLKa 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 749 --PDQALDLWQQLINADPLDIEANRAVSQLLAeqegvtaarefiaatcstfpdhaglhhlwyqqvQEGDAVVAEQVLRRL 826
Cdd:COG2956 90 glLDRAEELLEKLLELDPDDAEALRLLAEIYE---------------------------------QEGDWEKAIEVLERL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 827 VDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRSVDSSRAIS 906
Cdd:COG2956 137 LKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP 216
|
250
....*....|....*....
gi 501113660 907 ELIDICQSTEEQKDVIDFI 925
Cdd:COG2956 217 RLAELYEKLGDPEEALELL 235
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
64-243 |
1.90e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.59 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 64 AILLRAWRRNPADPDALYY----YISTMLWRQGpLAAYRLIQKHQSQfdhftpyqQAQWLGLQAQVVLEFRDFDRTDAYL 139
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLlaeiYEQEGDWEKA-IEVLERLLKLGPE--------NAHAYCELAELYLEQGDYDEAIEAL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 140 QEAKILAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQATTQLESGDI 219
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
170 180
....*....|....*....|....
gi 501113660 220 WAQLAALQLELGQYTQAQHSYQQY 243
Cdd:COG2956 248 LLALADLLERKEGLEAALALLERQ 271
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
489-799 |
7.11e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.86 E-value: 7.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 489 AAPHHRLALQAQFELAYYDADHTSALAVIEQMLEQFPAAPHLMLQKLQYLQELASRQDCVDWLTYVIEQEQFHPIFWTRL 568
Cdd:COG3914 5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 569 AKLLSDDARADEsAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRfaacledkeqtyahnyflaargcrqts 648
Cdd:COG3914 85 ALLLQALGRYEE-ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALR--------------------------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 649 VALQLlkqrwsrdQKRSARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEAKA 728
Cdd:COG3914 137 RALAL--------NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 729 K-----TAHSRWLSTAATLA---QYEYKPDQALDLWQQLINADPL--------DIEANRAVSQLLAEQEGVTAAREFIAA 792
Cdd:COG3914 209 LdpdnaDAHSNLLFALRQACdweVYDRFEELLAALARGPSELSPFallylpddDPAELLALARAWAQLVAAAAAPELPPP 288
|
....*..
gi 501113660 793 TCSTFPD 799
Cdd:COG3914 289 PNPRDPD 295
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
513-763 |
1.35e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.90 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 513 ALAVIEQMLEQFPAAPHLMLQKLQYLQELASRQDCVDWLTYVIEQEQFHPIFWTRLAKLLSDDARADEsAIRLLRRSIRA 592
Cdd:COG2956 27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR-AEELLEKLLEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 593 MPTEAYNYFLLANLYWSQRQFDVALDLYRFAACLEDKEQTYAHNYFLAARGCRQTSVALQLLKQRWSRDqKRSARPVYAL 672
Cdd:COG2956 106 DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD-PDCARALLLL 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 673 ATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEAKAKTAHSRWLSTAATLAQYEYKPDQA 752
Cdd:COG2956 185 AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAA 264
|
250
....*....|.
gi 501113660 753 LDLWQQLINAD 763
Cdd:COG2956 265 LALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1217-1470 |
1.64e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.90 E-value: 1.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1217 IQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRLGAK 1296
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1297 ADFRKAFELDPEYSFAGLSLFDLELEGLETEAAANTLARL-KEHCNDEFVLARAVQLAVRQNDLNTATQTLAQLCIYPSD 1375
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLlKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1376 QEWPLEAAVESMIAANWTTEAQTILFDAFPQPDAHPKVGYHWVYCCEKLKQRKFCQKQLQKFHPDHPvQRQALITYIRLL 1455
Cdd:COG2956 177 CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLL 255
|
250
....*....|....*
gi 501113660 1456 AYRNSSGPLLKFLRE 1470
Cdd:COG2956 256 ERKEGLEAALALLER 270
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
702-984 |
3.79e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.55 E-value: 3.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 702 LLLYRAKYLGEHGQFDQAHALLKEAKAKTAHSRWLSTAATLAQYEYKPDQALDLWQQLINADPLDIEANRAVS------- 774
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAallelaa 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 775 QLLAEQEGVTAAREFIAATCSTFPDHAGLHHLW-YQQVQEGDAVVAEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAG 853
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLgNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 854 FDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRSVDSSRAISELIDICQSTEEQKDVIDFIFHEFQKQV 933
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALAR 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501113660 934 ITGDGLFTFYQYARTVLTPEDFD---QRIQEVHAARPDLWQVWTVRSRQ-------LLSSD 984
Cdd:COG3914 246 GPSELSPFALLYLPDDDPAELLAlarAWAQLVAAAAAPELPPPPNPRDPdrklrigYVSAD 306
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
114-248 |
1.03e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 114 QQAQWLGLQAQVVLEFRDFDRTDAYLQEAKILAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHL 193
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 501113660 194 YTLLNQDDQALELLQQATTQL-ESGDIWAQLAALQLELGQYTQAQHSYQQYEQACP 248
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1005-1132 |
1.18e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.20 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1005 RVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWK 1084
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 501113660 1085 LDDCEAALQQLQKALRLDPSYDWGWNRLQEWAQTLERPHLTADIAREL 1132
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
555-792 |
1.56e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.32 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 555 IEQEQFHPIFWTRLAKLLSDDARADEsAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRFAACLEDKEQTYA 634
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEE-AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 635 HNYFLAARGCRQTSVALQLLKQRWSRDQKrSARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHG 714
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPD-DAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501113660 715 QFDQAHALLKEAKAKTAHSRWLSTAATLAQYEYKPDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAA 792
Cdd:COG0457 159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLA 236
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
978-1412 |
2.01e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 2.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 978 RQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDRTNALDKC 1057
Cdd:TIGR02917 167 QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1058 KALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSYDWGWN-------RLQEWAQTLERPHLTADIAR 1130
Cdd:TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLlagaseyQLGNLEQAYQYLNQILKYAP 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1131 ELTVTRSGEAQSWLRLAEYltgddtlDERIAAVDQAIALNPRCWDAYD------LKAKVLAAAERYEDAIATCSPPEVDD 1204
Cdd:TIGR02917 327 NSHQARRLLASIQLRLGRV-------DEAIATLSPALGLDPDDPAALSllgeayLALGDFEKAAEYLAKATELDPENAAA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1205 DvpsflgARAAWIQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGE 1284
Cdd:TIGR02917 400 R------TQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1285 AKQKTGDRLGAKADFRKAFELDPEYSFAGLSLFDLELEGLETEAAANTLAR-LKEHCNDEFVLARAVQLAVRQNDLNTAT 1363
Cdd:TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKvLTIDPKNLRAILALAGLYLRTGNEEEAV 553
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 501113660 1364 QTLAQLCIYPSDQEWPLEAAVESMIAANWTTEAQTILFDAfpqPDAHPK 1412
Cdd:TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA---ADAAPD 599
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
666-872 |
2.21e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.85 E-value: 2.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 666 ARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEAKAKTAHS-RWLSTAATLAQ 744
Cdd:COG3914 10 AALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaALLELAALLLQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 745 YEYKPDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTFPDHAGLHH-LWYQQVQEGDAVVAEQVL 823
Cdd:COG3914 90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLnLGEALRRLGRLEEAIAAL 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 501113660 824 RRLVDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFT 872
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
960-1169 |
2.45e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.94 E-value: 2.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 960 QEVHAARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDS 1039
Cdd:COG0457 32 EKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1040 AIQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSYDWGWNRLQEWAQTL 1119
Cdd:COG0457 112 ALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 501113660 1120 ERPHLTADIARELTVTRSGEAQSWLRLAEYLTGDDTLDERIAAVDQAIAL 1169
Cdd:COG0457 192 AAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
988-1103 |
4.21e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.47 E-value: 4.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 988 EALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDRTNALDKCKALLETALMH 1067
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 501113660 1068 SPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDP 1103
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
130-298 |
8.50e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.51 E-value: 8.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 130 RDFDRTDAYLQEAKILAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQ 209
Cdd:COG2956 22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 210 A-TTQLESGDIWAQLAALQLELGQYTQAQHSYQQYEQACPlldkaGQSRLWSAQADIAYQRGDFNQAHHLAQKLTEY--- 285
Cdd:COG2956 102 LlELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP-----ENAHAYCELAELYLEQGDYDEAIEALEKALKLdpd 176
|
170
....*....|....*
gi 501113660 286 --PYYQSLAQRLLEL 298
Cdd:COG2956 177 caRALLLLAELYLEQ 191
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
963-1214 |
8.65e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.93 E-value: 8.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 963 HAARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQ 1042
Cdd:COG3914 37 LAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALF 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1043 QLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPSYdwgwnrlqewaqtlerp 1122
Cdd:COG3914 117 NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN----------------- 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1123 hltadiareltvtrsgeAQSWLRLAEYLTGDDTLDERIAAVDQAIALNPR----------------CWDAYDLKAKVLAA 1186
Cdd:COG3914 180 -----------------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDnadahsnllfalrqacDWEVYDRFEELLAA 242
|
250 260
....*....|....*....|....*...
gi 501113660 1187 AERYEDAIATCSPPEVDDDVPSFLGARA 1214
Cdd:COG3914 243 LARGPSELSPFALLYLPDDDPAELLALA 270
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
672-1104 |
1.06e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.02 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 672 LATAYDHLDRPSE--AIEVLAQTQSWHPGDGELLLYRAK-YLGEhGQFDQAHALLKEA-KAKTAHSRWLSTAATLAQYEY 747
Cdd:TIGR02917 435 LLLILSYLRSGQFdkALAAAKKLEKKQPDNASLHNLLGAiYLGK-GDLAKAREAFEKAlSIEPDFFPAAANLARIDIQEG 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 748 KPDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFiaatcstfpdhaglhhlwyqqvqegdavvaeqvLRRLV 827
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW---------------------------------LEKAA 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 828 DINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRSVDSSRAISE 907
Cdd:TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 908 LIDIcqsteeqkdvidfifHEFQKQvitgdglftfYQYARTVLtpedfdQRIQEVHaarPDLWQVWTVRSRQLLSSDRTT 987
Cdd:TIGR02917 641 LADA---------------YAVMKN----------YAKAITSL------KRALELK---PDNTEAQIGLAQLLLAAKRTE 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 988 EALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIqQLADLYDRTNALDKCKALLETALMH 1067
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEAVKTLEAWLKT 765
|
410 420 430
....*....|....*....|....*....|....*..
gi 501113660 1068 SPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDPS 1104
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
|
|
| Peptidase_C39A |
cd02549 |
A sub-family of peptidase family C39. Peptidase family C39 mostly contains ... |
312-442 |
1.09e-07 |
|
A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are lacking the nucleotide-binding transporter signature or have different domain architectures.
Pssm-ID: 239109 [Multi-domain] Cd Length: 141 Bit Score: 52.80 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 312 RQHHMTCAPATLTTLCAYWGTTVDHQQLADSICYN------------GTSSYSERDWAsqqgwAVCEFTVTWDSIIQLID 379
Cdd:cd02549 1 PQLENGCGPTSLAMVLSYLGVKVTKPQLAAEGNTYdfakdgygtypkPIVSAAARKYG-----LVVRPLTGLLALLRQLA 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501113660 380 AGIP----FTLSTVEATSAHLQAVIGYDsRLQTLIIRDPY-HRGIVEPWAkEFLERYQASGPRGMVLL 442
Cdd:cd02549 76 AGHPvivsVNLGVSITPSGHAMVVIGYD-RKGNVYVNDPGgGRRLVVSFD-EFEKAWKRMGGQAVVIL 141
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
90-697 |
1.30e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.63 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 90 RQGPLAAYRLIQKHQSQFdhftpyqqAQWLGLQAQVVLEFRDFDRTDAYLQEAKILAPEDPWITLLQSRLWEQEDRYPDA 169
Cdd:TIGR02917 209 IELALAAYRKAIALRPNN--------IAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDA 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 170 LAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQATTQLESgDIWAQ--LAALQLELGQYTQAQhsyqqyEQAC 247
Cdd:TIGR02917 281 RETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARrlLASIQLRLGRVDEAI------ATLS 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 248 PLLDKAGQSRLWSAQADIAY-QRGDFNQAHHLAQKLTEY-PYYQSLAQRL--LELPEGE--------------------- 302
Cdd:TIGR02917 354 PALGLDPDDPAALSLLGEAYlALGDFEKAAEYLAKATELdPENAAARTQLgiSKLSQGDpseaiadletaaqldpelgra 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 303 RVILPVGFVRQHHMTCAPATLTTLCAYWGTTVDHQQLADSIcYNGTSSYSERDWASQQGWavceftvtwdsIIQLIDAGI 382
Cdd:TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI-YLGKGDLAKAREAFEKAL-----------SIEPDFFPA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 383 PFTLSTVEATSAHLQAVIgydSRLQTLIIRDPYHRGIVEPWAkeflERYQASGPRGMVLlppekaGLLETLDLPDSRLYD 462
Cdd:TIGR02917 502 AANLARIDIQEGNPDDAI---QRFEKVLTIDPKNLRAILALA----GLYLRTGNEEEAV------AWLEKAAELNPQEIE 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 463 QLHAL-QAALTHHDRATAGDWSQRLNGAAPHHRLALQAQFELAYYDADHTSALAVIEQMLEQFP--AAPHLMLQKLQylq 539
Cdd:TIGR02917 569 PALALaQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPdsALALLLLADAY--- 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 540 elASRQDCVDWLTYVIEQEQFHPIFWT---RLAKLLSDDARAdESAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVA 616
Cdd:TIGR02917 646 --AVMKNYAKAITSLKRALELKPDNTEaqiGLAQLLLAAKRT-ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 617 LDLYRFAACLEDKEQT--YAHNYFLAArgcRQTSVALQLLKQrWSRDQKRSARPVYALATAYDHLDRPSEAIEVLAQTQS 694
Cdd:TIGR02917 723 IQAYRKALKRAPSSQNaiKLHRALLAS---GNTAEAVKTLEA-WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK 798
|
...
gi 501113660 695 WHP 697
Cdd:TIGR02917 799 KAP 801
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1078-1195 |
3.42e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 3.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1078 LADVRWKLDDCEAALQQLQKALRLDPSYDWGWNRLQEWAQTLERPHLTADIARELTVTRSGEAQSWLRLAEYLTGDDTLD 1157
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89
|
90 100 110
....*....|....*....|....*....|....*...
gi 501113660 1158 ERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIA 1195
Cdd:COG4783 90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
566-898 |
4.39e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.09 E-value: 4.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 566 TRLAKLLSDDARADEsAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRFAACLEDKEQTYahnYFLAARGCR 645
Cdd:TIGR02917 537 LALAGLYLRTGNEEE-AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA---WLMLGRAQL 612
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 646 QTSVALQLLK--QRWSRDQKRSARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALL 723
Cdd:TIGR02917 613 AAGDLNKAVSsfKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 724 KE-AKAKTAHSRWLSTAATLAQYEYKPDQALDLWQQLINADPLD---IEANRAVSQLLAEQEGVtaarEFIAATCSTFPD 799
Cdd:TIGR02917 693 KSlQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSqnaIKLHRALLASGNTAEAV----KTLEAWLKTHPN 768
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 800 HAGLH-HLWYQQVQEGDAVVAEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAGFDAcETAQHLDPHNPAYFTIYGYLW 878
Cdd:TIGR02917 769 DAVLRtALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYA-ERALKLAPNIPAILDTLGWLL 847
|
330 340
....*....|....*....|
gi 501113660 879 VLNKDIPMAKTAFKSALQRS 898
Cdd:TIGR02917 848 VEKGEADRALPLLRKAVNIA 867
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
718-915 |
5.50e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.61 E-value: 5.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 718 QAHALLKEAKAKTAHSRWLSTAATLAQYEYKPDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTF 797
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 798 PDHAGLhhlwyQQVQEGDAVVAEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYL 877
Cdd:COG3914 81 LELAAL-----LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 501113660 878 WVLNKDIPMAKTAFKSALQRSVDSSRAISELIDICQST 915
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDL 193
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
16-296 |
6.82e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.32 E-value: 6.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 16 SALMDQGFYLQAYDLCQSV-DLRSTGPDTTTQLLVGRLtgALGAPRQRAAILLRAWRRNPADPDALYYYISTMLwRQGPL 94
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKAtELDPENAAARTQLGISKL--SQGDPSEAIADLETAAQLDPELGRADLLLILSYL-RSGQF 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 95 AAYRLIQKHQ--SQFDhftpyqQAQWLGLQAQVVLEFRDFDRTDAYLQEAKILAPEDPWITLLQSRLWEQEDRYPDALAM 172
Cdd:TIGR02917 448 DKALAAAKKLekKQPD------NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 173 AQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQATTqLESGDIwaqlaALQLELGQYTQAQhsyQQYEQACPLLDK 252
Cdd:TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-LNPQEI-----EPALALAQYYLGK---GQLKKALAILNE 592
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 501113660 253 AG-----QSRLWSAQADIAYQRGDFNQAHHLAQKLTEYPYYQSLAQRLL 296
Cdd:TIGR02917 593 AAdaapdSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
123-306 |
1.10e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 51.93 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 123 AQVVLEFRDFDRTDAYLQEAKILAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQ 202
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 203 ALELLQQATT-QLESGDIWAQLAALQLELGQYTQAQHSYQQYEQACPLLDKAGQSRLWSAQADIAYQRGDFNQAHHLAQK 281
Cdd:COG0457 129 AIEAYERALElDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
170 180
....*....|....*....|....*
gi 501113660 282 LTEYPYYQSLAQRLLELPEGERVIL 306
Cdd:COG0457 209 KKLAILTLAALAELLLLALALLLAL 233
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1215-1308 |
1.15e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.23 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1215 AWIQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRLG 1294
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|....
gi 501113660 1295 AKADFRKAFELDPE 1308
Cdd:COG4235 104 AIAAWQKLLALLPA 117
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
664-800 |
1.26e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.42 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 664 RSARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEAKAKTAHSRWLstAATLA 743
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA--RLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 744 QYEYK---PDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTFPDH 800
Cdd:COG4783 80 LALLKagdYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
459-755 |
1.54e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.07 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 459 RLYDQLHALQAALTHHDRATAGDWSQRLNGAAPHHRLALQAQFELAYYDADHTSALAVIEQMLEQFPAAPHLMLQKLQYL 538
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 539 QELASRQDCVDWLTYVIEQEQFHPIFWTRLAKLLSDDARADEsAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALD 618
Cdd:COG3914 89 QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE-ALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 619 LYRFAACLeDKEQTYAHNyflaargcrqtsvalqllkqrwsrdqkrsarpvyALATAYDHLDRPSEAIEVLAQTQSWHPG 698
Cdd:COG3914 168 ALRRALEL-DPDNAEALN----------------------------------NLGNALQDLGRLEEAIAAYRRALELDPD 212
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 501113660 699 DGELLLYRAKYLGEHGQFDQAHALLKEAKAKTAHSRWLSTAATLAQYEYKPDQALDL 755
Cdd:COG3914 213 NADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLAL 269
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
64-284 |
2.04e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.27 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 64 AILLRAWRRNPADPDAlYYYISTMLWRQGPLAayRLIQKHQSQFDHfTPYQQAQWLGLqAQVVLEFRDFDRTDAYLQEAK 143
Cdd:COG2956 29 DLLEEALELDPETVEA-HLALGNLYRRRGEYD--RAIRIHQKLLER-DPDRAEALLEL-AQDYLKAGLLDRAEELLEKLL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 144 ILAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQA-TTQLESGDIWAQ 222
Cdd:COG2956 104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAlKLDPDCARALLL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 501113660 223 LAALQLELGQYTQAQHSYQQYEQACPlldkaGQSRLWSAQADIAYQRGDFNQAHHLAQKLTE 284
Cdd:COG2956 184 LAELYLEQGDYEEAIAALERALEQDP-----DYLPALPRLAELYEKLGDPEEALELLRKALE 240
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1156-1307 |
2.32e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1156 LDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSPPEVDDDVPSFLGARAAWIQYQQGQFDEAIQAMKTIL 1235
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 501113660 1236 AKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQGEAKQKTGDRLGAKADFRKAFELDP 1307
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
964-1103 |
2.43e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 964 AARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQ 1043
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1044 LADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDCEAALQQLQKALRLDP 1103
Cdd:COG5010 94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
670-779 |
2.77e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 670 YALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEA-KAKTAHSRWLSTAATLAQYEYK 748
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAlALDPDNPEALYLLGLAAFQQGD 100
|
90 100 110
....*....|....*....|....*....|.
gi 501113660 749 PDQALDLWQQLINADPLDIEAnRAVSQLLAE 779
Cdd:COG4235 101 YAEAIAAWQKLLALLPADAPA-RLLEASIAE 130
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1013-1104 |
4.07e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 4.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1013 VHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDRTNALDKCKALlETALMHSPLEAYLHGYLADVRWKLDDCEAAL 1092
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 501113660 1093 QQLQKALRLDPS 1104
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1217-1308 |
6.50e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.32 E-value: 6.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1217 IQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLpTAQQLVRLAPQECIAWGYQGEAKQKTGDRLGAK 1296
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 501113660 1297 ADFRKAFELDPE 1308
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
952-1069 |
9.98e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.11 E-value: 9.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 952 PEDFDQRIQEVHAARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTAL 1031
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90 100 110
....*....|....*....|....*....|....*...
gi 501113660 1032 RINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSP 1069
Cdd:COG4783 100 KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
819-908 |
1.05e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 819 AEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRS 898
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90
....*....|
gi 501113660 899 VDSSRAISEL 908
Cdd:COG4235 82 PDNPEALYLL 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
484-726 |
1.21e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 484 QRLNGAAPHHRLALQAQFELAYYDADHTSALAVIEQMLEQFPAAPHlmlqklqylqelasrqdcvdwltyvieqeqfhpi 563
Cdd:COG2956 100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH---------------------------------- 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 564 FWTRLAKLLSDDARADEsAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRfaacledkeqtyahnyflaarg 643
Cdd:COG2956 146 AYCELAELYLEQGDYDE-AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE---------------------- 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 644 crqtsvalQLLKQrwsrdQKRSARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDgELLLYRAKYLGEHGQFDQAHALL 723
Cdd:COG2956 203 --------RALEQ-----DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALL 268
|
...
gi 501113660 724 KEA 726
Cdd:COG2956 269 ERQ 271
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1090-1196 |
1.53e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1090 AALQQLQKALRLDPSYDWGWNRLQEWAQTLERPHLTADIARELTVTRSGEAQSWLRLAEYLTGDDTLDERIAAVDQAIAL 1169
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*..
gi 501113660 1170 NPRCWDAYDLKAKVLAAAERYEDAIAT 1196
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
145-281 |
2.13e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.08 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 145 LAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQA-TTQLESGDIWAQL 223
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAlELDPDDAEALNNL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 501113660 224 AALQLELGQYTQAQHSYQQYEQACPLLDKAgqsrlWSAQADIAYQRGDFNQAHHLAQK 281
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPDDAEA-----LYNLGLALLELGRYDEAIEAYER 135
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
740-867 |
2.95e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 740 ATLAQYEYKPDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTFPDHAGLHH-LWYQQVQEGDAVV 818
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLnLGLALLKAGDYDE 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 501113660 819 AEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHN 867
Cdd:COG4783 91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1123-1331 |
4.52e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.45 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1123 HLTADIARELTVTRSGEAQSWLRLAEYLTGDDTLDERIAAVDQAIAlnprcwDAYDLKAKVLAAAERYEDAIAtcsppev 1202
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALA------LAAAALAAAALAAERIDRALA------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1203 DDDVPSFLGARAAwIQYQQGQFDEAIQAMKTILAKDPDYFAGWRILADWYRQLDHLDAYLPTAQQLVRLAPQECIAWGYQ 1282
Cdd:COG4785 69 LPDLAQLYYERGV-AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 501113660 1283 GEAKQKTGDRLGAKADFRKAFELDPEYSFAGLSLFDLELEGLETEAAAN 1331
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALAL 196
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
812-923 |
4.91e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 812 QEGDAVVAEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAF 891
Cdd:COG4783 16 LAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALL 95
|
90 100 110
....*....|....*....|....*....|..
gi 501113660 892 KSALQRSVDSSRAISELIDICQSTEEQKDVID 923
Cdd:COG4783 96 EKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
957-1069 |
6.17e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 6.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 957 QRIQEVHAARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPG 1036
Cdd:COG4235 4 ARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD 83
|
90 100 110
....*....|....*....|....*....|...
gi 501113660 1037 WDSAIQQLADLYDRTNALDKCKALLETALMHSP 1069
Cdd:COG4235 84 NPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
496-624 |
6.30e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 6.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 496 ALQAQFELAYYDADHTSALAVIEQMLEQFPAAPHLMLQKLQYLQELASRQDCVDWLTYVIEQEQFHPIFWTRLAKLLSDD 575
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 501113660 576 ARADEsAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRFAA 624
Cdd:COG4783 86 GDYDE-ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
666-852 |
1.43e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 666 ARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEA-KAKTAHSRWLSTAATLAQ 744
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAlELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 745 YEYKPDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTFPDHA-GLHHLWYQQVQEGDAVVAEQVL 823
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAdALYNLGIALEKLGRYEEALELL 167
|
170 180
....*....|....*....|....*....
gi 501113660 824 RRLVDINPKDAWSWRQIAWQLGRQQQLEA 852
Cdd:COG0457 168 EKLEAAALAALLAAALGEAALALAAAEVL 196
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
509-731 |
1.72e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.00 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 509 DHTSALAVIEQMLEQFPAAPHLMLQKLQYLQELASRQDCVDWLTYVIEQEQFHPIFWTRLAKLLSDDARADEsAIRLLRR 588
Cdd:COG0457 23 RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE-ALEDYDK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 589 SIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRFAACLEDKEQTYAHNYFLAARGCRQTSVALQLLKQRWSRDQKRSARP 668
Cdd:COG0457 102 ALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 501113660 669 VYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEAKAKTA 731
Cdd:COG0457 182 ALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
766-898 |
1.76e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.26 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 766 DIEANRAVSQLLAEQEGVTAAREFIAATCSTFPDHAGLHHLW-YQQVQEGDAVVAEQVLRRLVDINPKDAWSWRQIAWQL 844
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLgEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 501113660 845 GRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRS 898
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
1010-1240 |
1.80e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 46.61 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1010 LAIVHRTRKDDEAEEQALQTALRINPGWDSAIQQLADLYDRTNAldkckallETALmhspleAYLHGYLADVRWKLDDCE 1089
Cdd:PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP--------EKAL------AFIASLSASQRRSIDDIE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1090 AALQ----------------------QLQKALRLDPSYDWGWNRLqewAQTLERPHLT--ADIA-RELTVTRSGEAQSWL 1144
Cdd:PRK11447 457 RSLQndrlaqqaealenqgkwaqaaeLQRQRLALDPGSVWLTYRL---AQDLRQAGQRsqADALmRRLAQQKPNDPEQVY 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1145 RLAEYLTGDDTlDEriAAVDQAIALNPRCWDA--YDLKAK-----VLAAAERYED------AIATC--SPPEVDDDVpsf 1209
Cdd:PRK11447 534 AYGLYLSGSDR-DR--AALAHLNTLPRAQWNSniQELAQRlqsdqVLETANRLRDsgkeaeAEALLrqQPPSTRIDL--- 607
|
250 260 270
....*....|....*....|....*....|.
gi 501113660 1210 lgARAAWIQyQQGQFDEAIQAMKTILAKDPD 1240
Cdd:PRK11447 608 --TLADWAQ-QRGDYAAARAAYQRVLTREPG 635
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
565-699 |
1.99e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.26 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 565 WTRLAKLLSDDARADEsAIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRFAACLEDKEQTYAHNYFLAARGC 644
Cdd:COG4783 7 LYALAQALLLAGDYDE-AEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 501113660 645 RQTSVALQLLKQRWSRDQKrSARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGD 699
Cdd:COG4783 86 GDYDEALALLEKALKLDPE-HPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
113-298 |
2.89e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.75 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 113 YQQAQWLGLQAQVVLEFRDFDRTDAYLQEAKILAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAH 192
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 193 LYTL------LNQDDQALELLQQATT-QLESGDIWAQLAALQLELGQYTQAQHSYQQYeqacpLLDKAGQSRLWSAQADI 265
Cdd:COG3914 81 LELAalllqaLGRYEEALALYRRALAlNPDNAEALFNLGNLLLALGRLEEALAALRRA-----LALNPDFAEAYLNLGEA 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 501113660 266 AYQRGDFNQAHHLAQKLTEY-----PYYQSLAQRLLEL 298
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELdpdnaEALNNLGNALQDL 193
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
137-248 |
4.22e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 4.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 137 AYLQEAKILAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQAtTQLES 216
Cdd:COG4235 4 ARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA-LALDP 82
|
90 100 110
....*....|....*....|....*....|....
gi 501113660 217 GDIWAQ--LAALQLELGQYTQAQHSYQQYEQACP 248
Cdd:COG4235 83 DNPEALylLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
162-242 |
5.23e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 44.13 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 162 QEDRYPDALAMAQKALAQHLwYRPAVLAT-AHLYTLLNQDDQALELLQQATTQLESGDIWAQLAALQLELGQYTQAQHSY 240
Cdd:COG3071 236 QGGDPAKQLKRAEKWLKKHP-NDPDLLLAlGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHY 314
|
..
gi 501113660 241 QQ 242
Cdd:COG3071 315 RK 316
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
943-1071 |
5.40e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.25 E-value: 5.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 943 YQYARTVLTPEDFDQRIQEVHAARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEA 1022
Cdd:COG5010 27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 501113660 1023 EEQALQTALRINPGWDSAIQQLADLYDRTNALDKCKALLETALMHSPLE 1071
Cdd:COG5010 107 AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
159-250 |
5.85e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 159 LWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQATTQLESGDIWAQLAALQLELGQYTQAQH 238
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 501113660 239 SYQQYEQACPLL 250
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
445-788 |
7.62e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 43.75 E-value: 7.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 445 EKAgLLETLDLPDSRLYDQLHALQAALTHHDRATAGDWSQRLNGAAPHHRLA-LQAQFELAYYDADHTSALAVIEQMLEQ 523
Cdd:COG3071 36 EKL-LSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATLEALRAG 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 524 FPAAPHLMLQKLQYLQELASrqdcvdwltyvieqeqfhpifWTRLAKLLsddaradesaiRLLRRSiRAMPTEAYNyfll 603
Cdd:COG3071 115 APRHPQVLRLLLQAYRQLGD---------------------WEELLELL-----------PALRKH-KALSAEEAQ---- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 604 anlywsQRQFDVALDLYRFAAcledkeqtyahnyflaargcrQTSVALQLLKQRWSRDQKRSARPVYALATAYDHLDRPS 683
Cdd:COG3071 158 ------ALERRAYLGLLRQAA---------------------RDAEALKALWKALPRAERRDPELAAAYARALIALGDHD 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 684 EAIEVLAQTQSWHPGDGELLLYrakylgEHGQFDQAHALLKEA----KAKTAHSRWLSTAATLAQYEYKPDQALDLWQQL 759
Cdd:COG3071 211 EAERLLREALKRQWDPRLVRLY------GRLQGGDPAKQLKRAekwlKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAA 284
|
330 340
....*....|....*....|....*....
gi 501113660 760 INADPlDIEANRAVSQLLAEQEGVTAARE 788
Cdd:COG3071 285 LALRP-SAEAYAELARLLEQLGDPEEAAE 312
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
812-898 |
7.91e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 812 QEGDAVVAEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAGFdACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAF 891
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*..
gi 501113660 892 KSALQRS 898
Cdd:COG3063 83 ERALELD 89
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
154-298 |
7.92e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 154 LLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQAT-TQLESGDIWAQLAALQLELGQ 232
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLeRDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 501113660 233 YTQAQHSYQQyeqacpLLDKAGQS-RLWSAQADIAYQRGDFNQAHHLAQKLTEY-----PYYQSLAQRLLEL 298
Cdd:COG2956 92 LDRAEELLEK------LLELDPDDaEALRLLAEIYEQEGDWEKAIEVLERLLKLgpenaHAYCELAELYLEQ 157
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
675-764 |
8.89e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 675 AYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRAKYLGEHGQFDQAHALLKEAKAKTAHSRWLSTAATLAQYEYKPDQALD 754
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 501113660 755 LWQQLINADP 764
Cdd:COG3063 81 YLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
582-707 |
9.28e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 9.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 582 AIRLLRRSIRAMPTEAYNYFLLANLYWSQRQFDVALDLYRFAACLEDKEQTYAHNYFLAARGCRQTSVALQLLKQRWSRD 661
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 501113660 662 qKRSARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYRA 707
Cdd:COG4235 82 -PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
638-898 |
9.32e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 43.36 E-value: 9.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 638 FLAARGCRQTSVAL-QLLKQRWSRDQKR--------SARPVYALATAY--DHLDRPSEAIEVLAQTQSWHPGDGEL-LLY 705
Cdd:COG3071 11 LAAAVLLAALLEGLlALAEGRYARAEKLlskaaehsEAPLLAYLLAARaaQALGDYERRDEYLAQALELAPEAELAvLLT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 706 RAKYLGEHGQFDQAHALLKEAKAKTA-HSRWLSTAATLAQYEYKPDQALDLWQQLINADPLDIEANRAVSQLLAEQEGVT 784
Cdd:COG3071 91 RAELLLDQGQAEQALATLEALRAGAPrHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYLGLLRQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 785 AARefiaatcstfpDHAGLHHLWYQQ------------------VQEGDAVVAEQVLRRLVdinpKDAWSWRQI-AWQLG 845
Cdd:COG3071 171 AAR-----------DAEALKALWKALpraerrdpelaaayaralIALGDHDEAERLLREAL----KRQWDPRLVrLYGRL 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 501113660 846 RQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRS 898
Cdd:COG3071 236 QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALR 288
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1156-1240 |
1.55e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1156 LDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIATCSPPEVDDDVPSFLGARaAWIQYQQGQFDEAIQAMKTIL 1235
Cdd:COG3063 8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNL-AELLLELGDYDEALAYLERAL 86
|
....*
gi 501113660 1236 AKDPD 1240
Cdd:COG3063 87 ELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
799-910 |
1.67e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.37 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 799 DHAGLHHLWYQQVQEGDAVVAEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLW 878
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|....
gi 501113660 879 VLNKDIPMAKTAFKSALQRSVDSS--RAISELID 910
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADApaRLLEASIA 129
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
55-279 |
2.68e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.53 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 55 ALGAPRQRAAILLRAWRRNPADPDAlYYYISTMLWRQG----PLAAYRLIQKHQSQFdhftpyqqAQWLGLQAQVVLEFR 130
Cdd:COG0457 20 RLGRYEEAIEDYEKALELDPDDAEA-LYNLGLAYLRLGryeeALADYEQALELDPDD--------AEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 131 DFDRTDAYLQEAKILAPEDPWITLLQSRLWEQEDRYPDALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQA 210
Cdd:COG0457 91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501113660 211 TTQLESGDIWAQLAALQLELGQYTQAQHSYQQYEQACPLLDKAGQSRLWSAQADIAYQRGDFNQAHHLA 279
Cdd:COG0457 171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
616-765 |
3.86e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 616 ALDLYRFAACLEDKEQTYAHNYFLAARGCRQTSVALQLLKQRWSRDQKRSARPVYALATAYDHLDRPSEAIEVLAQTQSW 695
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 501113660 696 HPGDGELLLYRAKYLGEHGQFDQAHALLKEA-KAKTAHSRWLSTAATLAQYEYKPDQALDLWQQLINADPL 765
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKAlALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1036-1267 |
4.75e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1036 GWDSA------IQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDD---CEAALQQLQKAL-RLDPSY 1105
Cdd:COG4913 605 GFDNRaklaalEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDvasAEREIAELEAELeRLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1106 DWgWNRLQEWAQTLERPHLTADIARELTVTRSGEAQSwlRLAEYLTGDDTLDERIAAVDQAIALNPRcwdaydlkakvLA 1185
Cdd:COG4913 685 DD-LAALEEQLEELEAELEELEEELDELKGEIGRLEK--ELEQAEEELDELQDRLEAAEDLARLELR-----------AL 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 1186 AAERYEDAIATCSPPEVDDDvpsFLGARAAWIQYQQGQFDEAIQAMKTILAKDPDYFAGWRI----LADWYRQLDHLDAY 1261
Cdd:COG4913 751 LEERFAAALGDAVERELREN---LEERIDALRARLNRAEEELERAMRAFNREWPAETADLDAdlesLPEYLALLDRLEED 827
|
....*..
gi 501113660 1262 -LPTAQQ 1267
Cdd:COG4913 828 gLPEYEE 834
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
751-873 |
5.07e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 751 QALDLWQQLINADPLDIEANRAVSQLLAEQEGVTAAREFIAATCSTFPDHAGLHHLWYQ-QVQEGDAVVAEQVLRRLVDI 829
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEaLLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 501113660 830 NPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTI 873
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
580-734 |
6.11e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 40.25 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 580 ESAIRLLRRSIRAMPTeAYNYFLLANLYWSQRQFDVALDLYRfaACLEDKEQTYAHNYFLAAR---GCRQTSVALQLLKQ 656
Cdd:COG4700 73 GRELRELEKALEFADT-VQNRVRLADALLELGRYDEAIELYE--EALTGIFADDPHILLGLAQalfELGRYAEALETLEK 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 657 RWSRD-QKRSARPVYALATAYDHLDRPSEAIEVLAQTQSWHPGDGELLLYrAKYLGEHGQFDQAHALL----KEAKAKTA 731
Cdd:COG4700 150 LIAKNpDFKSSDAHLLYARALEALGDLEAAEAELEALARRYSGPEARYRY-AKFLARQGRTAEAKELLeeilDEAKHMPK 228
|
...
gi 501113660 732 HSR 734
Cdd:COG4700 229 HYR 231
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
1126-1196 |
6.15e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 40.95 E-value: 6.15e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501113660 1126 ADIARELTVTRSGE-----AQSWLRLAEYLTGDDTLDERIAAVDQAIALNPRCWDAYDLKAKVLAAAERYEDAIAT 1196
Cdd:PRK11788 161 IDVAERLEKLGGDSlrveiAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
819-932 |
6.50e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 40.38 E-value: 6.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 819 AEQVLRRLVDINPKDAWSWRQIAWQLGRQQQLEAGFDACETAQHLDPHNPAYFTIYGYLWVLNKDIPMAKTAFKSALQRS 898
Cdd:COG0457 61 ALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140
|
90 100 110
....*....|....*....|....*....|....
gi 501113660 899 VDSSRAISELIDICQSTEEQKDVIDFIFHEFQKQ 932
Cdd:COG0457 141 PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
119-275 |
6.57e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.22 E-value: 6.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 119 LGLQAQVVLEFRDFDRTDAYLQEAKILAPEDPWITLLQSR-LWEQEDRYPDALAMAQkaLAQHlwyRPAVLATAHLYTLL 197
Cdd:PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQdLRQAGQRSQADALMRR--LAQQ---KPNDPEQVYAYGLY 538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 198 ----NQDDQALELLQQATTQLESGDIWAQLAALQLE--LGQYTQAQHSYQQYEQACPLLDKAGQSRLWSAQADIAYQRGD 271
Cdd:PRK11447 539 lsgsDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDqvLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD 618
|
....
gi 501113660 272 FNQA 275
Cdd:PRK11447 619 YAAA 622
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
168-282 |
7.29e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.45 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 168 DALAMAQKALAQHLWYRPAVLATAHLYTLLNQDDQALELLQQATTQL-ESGDIWAQLAALQLELGQYTQAQhsyQQYEQA 246
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAE---ELLERA 77
|
90 100 110
....*....|....*....|....*....|....*.
gi 501113660 247 cpLLDKAGQSRLWSAQADIAYQRGDFNQAHHLAQKL 282
Cdd:COG4235 78 --LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
957-1114 |
9.94e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.51 E-value: 9.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501113660 957 QRIQEVHAARPDLWQVWTVRSRQLLSSDRTTEALAIAVEASERFPLLPRVWVDLAIVHRTRKDDEAEEQALQTALRINPG 1036
Cdd:COG4785 60 AERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 501113660 1037 WDSAIQQLADLYDRTNALDKCKALLETALMHSPLEAYLHGYLADVRWKLDDcEAALQQLQKalrldpsyDWGWNRLQE 1114
Cdd:COG4785 140 YAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDP-EKALALLLE--------DWATAYLLQ 208
|
|
| |
