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Conserved domains on  [gi|499961328|ref|WP_011642046|]
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MULTISPECIES: PTS IIA-like nitrogen regulatory protein PtsN [Maricaulis]

Protein Classification

PTS sugar transporter subunit IIA( domain architecture ID 10004459)

PTS mannose/fructose/sorbose family sugar transporter subunit IIA is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane

CATH:  3.40.930.10
Gene Ontology:  GO:0009401|GO:0016310|GO:0016301|GO:0008643|GO:1902495
PubMed:  11532441|10393270
SCOP:  4001876

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 1-148 4.11e-55

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


:

Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 170.03  E-value: 4.11e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328   1 MALADLIPNAGISIDLGASSRKQALQAMSE-LAATVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIF 79
Cdd:COG1762    1 MMLSDLLTPELILLDLEASSKEEAIEELAElLAEKGYVLDKEEYLEALLEREELGSTGIGPGIAIPHARPEGVKKPGIAV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499961328  80 ARLRTPVDFESIDGRPADLIFMLLAPENAGAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLAGE 148
Cdd:COG1762   81 ARLKEPVDFGAMDGEPVDLVFLLAAPEDDSEEHLKLLAELARLLSDEEFREKLLNAKSPEEILELLKEA 149
 
Name Accession Description Interval E-value
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 1-148 4.11e-55

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 170.03  E-value: 4.11e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328   1 MALADLIPNAGISIDLGASSRKQALQAMSE-LAATVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIF 79
Cdd:COG1762    1 MMLSDLLTPELILLDLEASSKEEAIEELAElLAEKGYVLDKEEYLEALLEREELGSTGIGPGIAIPHARPEGVKKPGIAV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499961328  80 ARLRTPVDFESIDGRPADLIFMLLAPENAGAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLAGE 148
Cdd:COG1762   81 ARLKEPVDFGAMDGEPVDLVFLLAAPEDDSEEHLKLLAELARLLSDEEFREKLLNAKSPEEILELLKEA 149
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 2-145 8.80e-50

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 156.42  E-value: 8.80e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328    2 ALADLIPNAGISIDLGASSRKQALQAMSELAATVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIFAR 81
Cdd:TIGR01419   1 SLIGLLLPEAIRVAMECGSKKRLLEIISLLAARELSLPEQDVFECLLAREKLGSTGVGNGIAIPHGRLSGLKQPVGVFIR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499961328   82 LRTPVDFESIDGRPADLIFMLLAPENAGAEHLKALARVSRLLRREDVRQRLRAApNADAVHAVL 145
Cdd:TIGR01419  81 LDAPVDFDALDGKPVDLLFALLVPENATAEHLEALSRIARKLSDKTICRRLRAA-SAEEIYQIL 143
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
12-146 2.81e-41

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 134.64  E-value: 2.81e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328   12 ISIDLGASSRKQALQAMSELAATvTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIFARLRTPVDFESI 91
Cdd:pfam00359   7 IFLNLEAKSKEEAIEFLADKLVE-AGYVEPAYLEAILEREKEGSTGIGNGIAIPHARSEAVKKPGIAVLTLKEPVDFGSE 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 499961328   92 DGRPADLIFMLLAPENaGAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLA 146
Cdd:pfam00359  86 DGKPVKLIFLLAAPDN-EASHLKILSQLARLLQDEEFVEKLLKAKDPEEILEILK 139
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 12-145 4.77e-39

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 128.83  E-value: 4.77e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328  12 ISIDLGASSRKQALQAMSELAAtVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIFARLRTPVDFESI 91
Cdd:cd00211    6 IRLNLKAKSKEEAIEELAQLLV-AAGYVEEEYIEALLEREKEGSTGIGNGIAIPHAKSEAVKKPGIAVLRLKEPVDFGSL 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499961328  92 DGRPADLIFMLLAPENagAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVL 145
Cdd:cd00211   85 DGQPVHLIFLLAAPDS--NEHLKALSQLARLLSDEEFVEQLLNAQSKEEILALL 136
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
19-146 3.70e-33

PTS IIA-like nitrogen regulatory protein PtsN;


Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 114.47  E-value: 3.70e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328  19 SSRKQALQAMSELAATVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARL-SGMDEVVGIFARLRTPVDFESIDGRPAD 97
Cdd:PRK10896  25 QSKKRALEIISELAAKQLSLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLeEDTLRAVGVFVQLEQPIAFDAIDNQPVD 104

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 499961328  98 LIFMLLAPENAGAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLA 146
Cdd:PRK10896 105 LLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIIT 153
 
Name Accession Description Interval E-value
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 1-148 4.11e-55

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 170.03  E-value: 4.11e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328   1 MALADLIPNAGISIDLGASSRKQALQAMSE-LAATVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIF 79
Cdd:COG1762    1 MMLSDLLTPELILLDLEASSKEEAIEELAElLAEKGYVLDKEEYLEALLEREELGSTGIGPGIAIPHARPEGVKKPGIAV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499961328  80 ARLRTPVDFESIDGRPADLIFMLLAPENAGAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLAGE 148
Cdd:COG1762   81 ARLKEPVDFGAMDGEPVDLVFLLAAPEDDSEEHLKLLAELARLLSDEEFREKLLNAKSPEEILELLKEA 149
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 2-145 8.80e-50

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 156.42  E-value: 8.80e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328    2 ALADLIPNAGISIDLGASSRKQALQAMSELAATVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIFAR 81
Cdd:TIGR01419   1 SLIGLLLPEAIRVAMECGSKKRLLEIISLLAARELSLPEQDVFECLLAREKLGSTGVGNGIAIPHGRLSGLKQPVGVFIR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499961328   82 LRTPVDFESIDGRPADLIFMLLAPENAGAEHLKALARVSRLLRREDVRQRLRAApNADAVHAVL 145
Cdd:TIGR01419  81 LDAPVDFDALDGKPVDLLFALLVPENATAEHLEALSRIARKLSDKTICRRLRAA-SAEEIYQIL 143
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
12-146 2.81e-41

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 134.64  E-value: 2.81e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328   12 ISIDLGASSRKQALQAMSELAATvTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIFARLRTPVDFESI 91
Cdd:pfam00359   7 IFLNLEAKSKEEAIEFLADKLVE-AGYVEPAYLEAILEREKEGSTGIGNGIAIPHARSEAVKKPGIAVLTLKEPVDFGSE 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 499961328   92 DGRPADLIFMLLAPENaGAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLA 146
Cdd:pfam00359  86 DGKPVKLIFLLAAPDN-EASHLKILSQLARLLQDEEFVEKLLKAKDPEEILEILK 139
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 12-145 4.77e-39

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 128.83  E-value: 4.77e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328  12 ISIDLGASSRKQALQAMSELAAtVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIFARLRTPVDFESI 91
Cdd:cd00211    6 IRLNLKAKSKEEAIEELAQLLV-AAGYVEEEYIEALLEREKEGSTGIGNGIAIPHAKSEAVKKPGIAVLRLKEPVDFGSL 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499961328  92 DGRPADLIFMLLAPENagAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVL 145
Cdd:cd00211   85 DGQPVHLIFLLAAPDS--NEHLKALSQLARLLSDEEFVEQLLNAQSKEEILALL 136
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
19-146 3.70e-33

PTS IIA-like nitrogen regulatory protein PtsN;


Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 114.47  E-value: 3.70e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328  19 SSRKQALQAMSELAATVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARL-SGMDEVVGIFARLRTPVDFESIDGRPAD 97
Cdd:PRK10896  25 QSKKRALEIISELAAKQLSLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLeEDTLRAVGVFVQLEQPIAFDAIDNQPVD 104

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 499961328  98 LIFMLLAPENAGAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLA 146
Cdd:PRK10896 105 LLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIIT 153
fruA TIGR00848
PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family ...
 6-132 8.28e-33

PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities. The fructose permeases of this family phosphorylate fructose on the 1-position. Those of family 4.6 phosphorylate fructose on the 6-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This model is specific for the IIA domain of the fructose PTS transporters. Also similar to the Enzyme IIA Fru subunits of the PTS, but included in TIGR01419 rather than this model, is enzyme IIA Ntr (nitrogen), also called PtsN, found in E. coli and other organisms, which may play a solely regulatory role. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 273298 [Multi-domain]  Cd Length: 129  Bit Score: 112.75  E-value: 8.28e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328    6 LIPNAGISIDLGASSRKQALQAMSElAATVTGQASRT--VFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIFARLR 83
Cdd:TIGR00848   1 LLNKDLIFLDQQFTSKEDVIKFLAN-KLLENGYISDTeeFLEDLLKREEEGTTGIGDGVAIPHAKSAAVKQPFVAIARLV 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 499961328   84 TPVDFESIDGRPADLIFMLLAP-ENAGAEHLKALARVSRLLRREDVRQRL 132
Cdd:TIGR00848  80 KGVDWQSLDGKPVKLIFLIAVPkDEAGNTHLKALSQLARLLLNDEFRAKL 129
PRK09765 PRK09765
PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
 1-154 7.32e-21

PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional


Pssm-ID: 182066 [Multi-domain]  Cd Length: 631  Bit Score: 87.87  E-value: 7.32e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328   1 MALADLIPNAGISIDLGASSRKQALQAMSELAATVTGQASRTVF-DAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIF 79
Cdd:PRK09765   1 MNLTTLTHRDLLCLNARFTSREEAIHALAQRLAALGKISSTEQFlEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499961328  80 ARLRTPVDFESIDG-RPADLIFMLLAPEN-AGAEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLAGEPASDAA 154
Cdd:PRK09765  81 ATLSEPLQWEGVDGpEAVDLIFLLAIPPNeAGTTHMQLLTALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPS 157
PRK09913 PRK09913
PTS fructose transporter subunit IIA;
12-146 4.68e-19

PTS fructose transporter subunit IIA;


Pssm-ID: 182141 [Multi-domain]  Cd Length: 148  Bit Score: 78.00  E-value: 4.68e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328  12 ISIDLGASSRKQALQAMSELAATVTG-QASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVVGIFARLRTPVDFES 90
Cdd:PRK09913   9 IDLNIQGNGAYSILKQLATIALQNGFiTDSHQFLQTLLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWQA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 499961328  91 IDGRPADLIFMLLAPENAGAEHLKALARVSRLLRREDVRQRLRAApNADAVHAVLA 146
Cdd:PRK09913  89 SDGEDVNCWICLGVPQSGEEDQVKIIGTLCRKIIHQDFIHQLKQG-DTDQVLALLN 143
MtlA2 COG4668
Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and ...
 45-149 7.09e-17

Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism];


Pssm-ID: 443705 [Multi-domain]  Cd Length: 143  Bit Score: 72.12  E-value: 7.09e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328  45 DAVLQRERLGSTGVGQGVAIPHARLSGMDEVV--GI-FARLRTPVDFEsiDGRPADLIFMLLAPENagaEHLKALARVSR 121
Cdd:COG4668   41 DAMLEREAQVSTYLGNGIAIPHGTNEAKDLVLktGIsVLQFPDGVDWG--DGNTVYLVIGIAAKSD---EHLEILRQLAR 115

                         90       100
                 ....*....|....*....|....*...
gi 499961328 122 LLRREDVRQRLRAAPNADAVHAVLAGEP 149
Cdd:COG4668  116 VLSDEENVEKLAKATDAEEILALLTGEN 143
PRK15083 PRK15083
PTS system mannitol-specific transporter subunit IICBA; Provisional
 12-150 1.23e-05

PTS system mannitol-specific transporter subunit IICBA; Provisional


Pssm-ID: 237905 [Multi-domain]  Cd Length: 639  Bit Score: 43.89  E-value: 1.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328  12 ISIDLGASSRKQALQ-AMSELAATvtGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLSGMDEVV--GI-FARLRTPVD 87
Cdd:PRK15083 502 IFLGLKAATKEEAIRfAGEQLVKG--GYVEPEYVDAMLDREKLTSTYLGESIAVPHGTVEAKDRVLktGVvFCQYPEGVR 579

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499961328  88 FESIDGRPADLIFMLLAPENagaEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLAGEPA 150
Cdd:PRK15083 580 FGEEEDDIARLVIGIAARNN---EHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGKKA 639
PRK13779 PRK13779
bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional
 7-148 2.23e-04

bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional


Pssm-ID: 237502 [Multi-domain]  Cd Length: 503  Bit Score: 40.24  E-value: 2.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328   7 IPNAGISIDLGASSRKQALQaMSELAATVTGQASRTVFDAVLQRERLGSTGVGQGVAIPHARLS--GMDEVVGIfARLRT 84
Cdd:PRK13779   4 LSESNIHLNAQAINKQQAIE-MAAAALEQAGNVENGYLQGMLARELQTSTFLGNGIAIPHGTLDtrHMVKNTGV-QIFQF 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499961328  85 PVDFESIDGRPADLIFMLLAPENagaEHLKALARVSRLLRREDVRQRLRAAPNADAVHAVLAGE 148
Cdd:PRK13779  82 PQGIEWGEGNIAYVVIGIAARSD---EHLSLLRQLTHVLSDEDTAAKLATLTDVKEFRAILMGE 142
PRK10372 PRK10372
PTS ascorbate transporter subunit IIA;
1-134 6.93e-03

PTS ascorbate transporter subunit IIA;


Pssm-ID: 182417 [Multi-domain]  Cd Length: 154  Bit Score: 34.95  E-value: 6.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328   1 MALAD-LIPNAGISIDLGASSRKQALQAMSEL---AATVTGQASRTVFDAVlqrERLGSTGV-GQGVAIPHAR-LSGMDE 74
Cdd:PRK10372   1 MKLRDsLAENKSIRLQAEAETWQEAVKIGVDLlvaADVVEPRYYQAILDGV---EQFGPYFViAPGLAMPHGRpEEGVKK 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499961328  75 VVGIFARLRTPVDFESIDGRPADlIFMLLAPENAGAEHLKALARVSRLLRREDVRQRLRA 134
Cdd:PRK10372  78 TGFALVTLKKPLEFNHEDNDPVD-ILITMAAVDANTHQEVGIMQIVNLFEDEANFDRLRA 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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