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Conserved domains on  [gi|499769786|ref|WP_011450520|]
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PQQ-binding-like beta-propeller repeat protein [Anaplasma phagocytophilum]

Protein Classification

PQQ-binding-like beta-propeller repeat protein( domain architecture ID 12135591)

PQQ (pyrrolo-quinoline quinone)-like beta-propeller repeat protein contains several instances of a beta-propeller repeat

Gene Ontology:  GO:0070968
PubMed:  16232604|11831471|2549854

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PQQ_2 pfam13360
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
 94-329 1.74e-42

PQQ-like domain; This domain contains several repeats of the PQQ repeat.


:

Pssm-ID: 433144 [Multi-domain]  Cd Length: 233  Bit Score: 149.09  E-value: 1.74e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786   94 DQGRLTALNSgDTSKVLWYVALAGGRrsvySSSLIHSRGVILCA-IDNVLYGLDPSTGQVKWSSTLRNFISGNLvLLNEG 172
Cdd:pfam13360   1 ADGVVTALDA-ATGAELWRVDLETGL----GGGVAVDGGRLFVAtGGGQLVALDAATGKLLWRQTLSGEVLGAP-LVAGG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  173 QSVAfMTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGkhYVIVVLPDGRVLCLDSYSGDKMWESEL----R 248
Cdd:pfam13360  75 RVFV-VAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGD--TVVAGFSSGKLVALDPATGKVRWEAPLaaprG 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  249 RRSMGSIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKEDEETLFVVTDTGELLAYDVDSKVRLW 328
Cdd:pfam13360 152 TNELERLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPNGPILDGDLLYVVSDDGELYALDRATGAVVW 231


                  .
gi 499769786  329 K 329
Cdd:pfam13360 232 K 232
 
Name Accession Description Interval E-value
PQQ_2 pfam13360
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
 94-329 1.74e-42

PQQ-like domain; This domain contains several repeats of the PQQ repeat.


Pssm-ID: 433144 [Multi-domain]  Cd Length: 233  Bit Score: 149.09  E-value: 1.74e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786   94 DQGRLTALNSgDTSKVLWYVALAGGRrsvySSSLIHSRGVILCA-IDNVLYGLDPSTGQVKWSSTLRNFISGNLvLLNEG 172
Cdd:pfam13360   1 ADGVVTALDA-ATGAELWRVDLETGL----GGGVAVDGGRLFVAtGGGQLVALDAATGKLLWRQTLSGEVLGAP-LVAGG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  173 QSVAfMTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGkhYVIVVLPDGRVLCLDSYSGDKMWESEL----R 248
Cdd:pfam13360  75 RVFV-VAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGD--TVVAGFSSGKLVALDPATGKVRWEAPLaaprG 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  249 RRSMGSIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKEDEETLFVVTDTGELLAYDVDSKVRLW 328
Cdd:pfam13360 152 TNELERLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPNGPILDGDLLYVVSDDGELYALDRATGAVVW 231


                  .
gi 499769786  329 K 329
Cdd:pfam13360 232 K 232
assembly_YfgL TIGR03300
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ...
 78-362 1.50e-23

outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274511 [Multi-domain]  Cd Length: 377  Bit Score: 100.78  E-value: 1.50e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786   78 LTIVPGDVSDVIVTLDDQGRLTALNsGDTSKVLWYVA----LAGGrrsVYSSSlihsRGVILCAIDNVLYGLDPSTGQVK 153
Cdd:TIGR03300  57 LRLQPAVAGGKVYAADADGTVAALD-AETGKRLWRVDlderLSGG---VGADG----GLVFVGTEKGEVIALDAEDGKEL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  154 WSSTL------RNFISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGkhYVIVVLP 227
Cdd:TIGR03300 129 WRAKLssevlsPPLVANGLVVVR--------TNDGRLTALDAATGERLWTYSRVTPPLTLRGSASPVIADG--GVLVGFA 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  228 DGRVLCLDSYSGDKMWEselRRRSMGSiGSIEI--------TPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSL 299
Cdd:TIGR03300 199 GGKLVALDLQTGQPLWE---QRVALPK-GRTELerlvdvdgDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQG 274

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786  300 SKEDEETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYL 362
Cdd:TIGR03300 275 PAVDDNRLYVTDADGVVVALDRRSGSELWKNDE--------LKYRqltAPAVLGGYLVVGDFEGYL 332
PQQ COG1520
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ...
 78-362 1.69e-23

Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441129 [Multi-domain]  Cd Length: 370  Bit Score: 100.66  E-value: 1.69e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  78 LTIVPGDVSDVIVTLDDQGRLTALNsGDTSKVLWYVA----LAGGrrsVYSSSlihsRGVILCAIDNVLYGLDPSTGQVK 153
Cdd:COG1520   49 SRLAPAVAGDRVYAADADGRVAALD-AATGKELWRVDlgepLSGG---VGADG----GLVVVGTEDGEVIALDADDGEEL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 154 WSSTLRN------FISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLW--HREESSVQVRVKSdlSVAYSSGKhyVIVV 225
Cdd:COG1520  121 WRARLSSevlaapAVAGGRVVVR--------TGDGRVYALDAATGERLWsyQRPVPALTLRGTS--SPVIVGGA--VLVG 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 226 LPDGRVLCLDSYSGDKMWE---------SELRRrsmgsIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGV 296
Cdd:COG1520  189 FANGKLVALDLANGQPLWEqrvaqprgrTELER-----LVDVDGTPVVDGGVVYAVAYQGRLAALDLRSGRVLWSRDLSS 263

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499769786 297 ---LSLskeDEETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYL 362
Cdd:COG1520  264 ytgLAV---DGNNLYVTDDDGRVWALDRRNGAELWKQDA--------LLYRgltAPVVLGDYVVVGDFEGYL 324
PRK11138 PRK11138
outer membrane biogenesis protein BamB; Provisional
 87-398 1.59e-18

outer membrane biogenesis protein BamB; Provisional


Pssm-ID: 236857 [Multi-domain]  Cd Length: 394  Bit Score: 86.52  E-value: 1.59e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  87 DVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRRSVYSSSLIHSRGVILCAIDNV--------LYGLDPSTGQVKWSSTL 158
Cdd:PRK11138  70 NKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVyigsekgqVYALNAEDGEVAWQTKV 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 159 ------RNFISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGKhyVIVVLPDGRVL 232
Cdd:PRK11138 149 agealsRPVVSDGLVLVH--------TSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGG--AIVGGDNGRVS 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 233 CLDSYSGDKMWE---------SELRRrsmgsIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKED 303
Cdd:PRK11138 219 AVLMEQGQLIWQqrisqptgaTEIDR-----LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVD 293

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 304 EETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISG 380
Cdd:PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSD--------LLHRlltAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDS 365

                        330
                 ....*....|....*...
gi 499769786 381 AQSLRYPIKADASIYVAA 398
Cdd:PRK11138 366 SGFLSEPVVADDKLLIQA 383
BamB_YfgL cd10276
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ...
 98-404 1.05e-17

Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.


Pssm-ID: 199834 [Multi-domain]  Cd Length: 358  Bit Score: 83.92  E-value: 1.05e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  98 LTALNSGDTSKVLWYVALAGGRRSVYSSSLIHSRG-VILCAIDNVLYGLDPSTGQVKWSSTLRN--FISGNLVLlneGQS 174
Cdd:cd10276    5 LPEPTPEFDPEVLWSKSVGNGGMAGIDLTPVVAGDmVYAADANGQVSAFNATTGKIIWETSLSGkgFLGGTPAV---GNG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 175 VAFM-TIDGYLCVFDVETGGLLWHREESSVQVRVKsdlsVAYSSGKHYVIVVlpDGRVLCLDSYSGDKMWESElrrrSMG 253
Cdd:cd10276   82 KIFVgTESGYLYALDAKDGSELWRTEVSDSQLLSP----PTYADGKIYVGTG--DGRLYYCNAETGKVVWNRT----STA 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 254 SIGSI--EITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKEDEE-------------TLFVVTDTGELLA 318
Cdd:cd10276  152 PELSLrgGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTELPRmidssvtyvvvggYLYSTSYQGYLVA 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 319 YDVDSKVRLWKlslGKFGKKKCLrwraPVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISGAQSLRYP-IKADASIYVA 397
Cdd:cd10276  232 LDFESGQFLWS---RKASGGTST----STDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGRVLSSPaIYVGVYIYVT 304


                 ....*..
gi 499769786 398 AGKMGFV 404
Cdd:cd10276  305 DNAEGYL 311
PA2928_fam NF041516
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa ...
 50-321 1.58e-05

PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa PAO1, as the family member most frequently cited in the literature, although PA2928 itself is significantly shorter at the N-terminus than most other members of this family, and is probably non-functional. WP_017001489.1 represents an intact equivalent to the PA2928 pseudogene.


Pssm-ID: 469402 [Multi-domain]  Cd Length: 345  Bit Score: 46.59  E-value: 1.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  50 GLFGRSSGSSDVD-GTFSKVKTIRGISTSLTIV----PGDVSDVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRrsVYS 124
Cdd:NF041516  18 GGSYLAGPEPSIEaQSGAVFYTVDGRDVALVPYerfgANGMSNGITSGMSQFRLAAVDL-ATGEKLWDKKLSDEL--SWE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 125 SSLIHS--RGVILcAIDNVLYGLDPSTGQVKWSS----TLRNFISGNLV-------LLNEGQSVAFMTIDGylcvfdvet 191
Cdd:NF041516  95 AYLLGAtdRYLYV-ATDKGLYVLDLATGKVVADEkeleGLGPALKDNLSaaraayaYDDDNRALYFYGLDG--------- 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 192 ggLLWHREESSVQVRVKSD---------LSVAYSSGKHYVIV-------VLPDGRVLCLDSYSGDKMWESELRRRSMGSI 255
Cdd:NF041516 165 --RYYQIDLDTLTATPADPataptyaglLFAEEAAKGRPATFlsdkeeaALEDERVALRERPRGALYGGVLVRVGGDGDL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 256 GSIE-------------ITPVVAGSEVFVV--------DDSGALSSIDLETGKITWSEDLGVLSLS-------------- 300
Cdd:NF041516 243 TPLGdtvfldggflldpTTLEGAADGHVLVvhkrtvndDANLLLSAVDLETGKVTWTLPLGYSSPSraftlpdgltllga 322

                        330       340
                 ....*....|....*....|...
gi 499769786 301 --KEDEETLFVVTDTGELLAYDV 321
Cdd:NF041516 323 gnPEGGDLLKIDLKDGKLTRYDV 345
 
Name Accession Description Interval E-value
PQQ_2 pfam13360
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
 94-329 1.74e-42

PQQ-like domain; This domain contains several repeats of the PQQ repeat.


Pssm-ID: 433144 [Multi-domain]  Cd Length: 233  Bit Score: 149.09  E-value: 1.74e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786   94 DQGRLTALNSgDTSKVLWYVALAGGRrsvySSSLIHSRGVILCA-IDNVLYGLDPSTGQVKWSSTLRNFISGNLvLLNEG 172
Cdd:pfam13360   1 ADGVVTALDA-ATGAELWRVDLETGL----GGGVAVDGGRLFVAtGGGQLVALDAATGKLLWRQTLSGEVLGAP-LVAGG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  173 QSVAfMTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGkhYVIVVLPDGRVLCLDSYSGDKMWESEL----R 248
Cdd:pfam13360  75 RVFV-VAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGD--TVVAGFSSGKLVALDPATGKVRWEAPLaaprG 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  249 RRSMGSIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKEDEETLFVVTDTGELLAYDVDSKVRLW 328
Cdd:pfam13360 152 TNELERLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPNGPILDGDLLYVVSDDGELYALDRATGAVVW 231


                  .
gi 499769786  329 K 329
Cdd:pfam13360 232 K 232
assembly_YfgL TIGR03300
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ...
 78-362 1.50e-23

outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274511 [Multi-domain]  Cd Length: 377  Bit Score: 100.78  E-value: 1.50e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786   78 LTIVPGDVSDVIVTLDDQGRLTALNsGDTSKVLWYVA----LAGGrrsVYSSSlihsRGVILCAIDNVLYGLDPSTGQVK 153
Cdd:TIGR03300  57 LRLQPAVAGGKVYAADADGTVAALD-AETGKRLWRVDlderLSGG---VGADG----GLVFVGTEKGEVIALDAEDGKEL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  154 WSSTL------RNFISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGkhYVIVVLP 227
Cdd:TIGR03300 129 WRAKLssevlsPPLVANGLVVVR--------TNDGRLTALDAATGERLWTYSRVTPPLTLRGSASPVIADG--GVLVGFA 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  228 DGRVLCLDSYSGDKMWEselRRRSMGSiGSIEI--------TPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSL 299
Cdd:TIGR03300 199 GGKLVALDLQTGQPLWE---QRVALPK-GRTELerlvdvdgDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQG 274

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786  300 SKEDEETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYL 362
Cdd:TIGR03300 275 PAVDDNRLYVTDADGVVVALDRRSGSELWKNDE--------LKYRqltAPAVLGGYLVVGDFEGYL 332
PQQ COG1520
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ...
 78-362 1.69e-23

Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441129 [Multi-domain]  Cd Length: 370  Bit Score: 100.66  E-value: 1.69e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  78 LTIVPGDVSDVIVTLDDQGRLTALNsGDTSKVLWYVA----LAGGrrsVYSSSlihsRGVILCAIDNVLYGLDPSTGQVK 153
Cdd:COG1520   49 SRLAPAVAGDRVYAADADGRVAALD-AATGKELWRVDlgepLSGG---VGADG----GLVVVGTEDGEVIALDADDGEEL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 154 WSSTLRN------FISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLW--HREESSVQVRVKSdlSVAYSSGKhyVIVV 225
Cdd:COG1520  121 WRARLSSevlaapAVAGGRVVVR--------TGDGRVYALDAATGERLWsyQRPVPALTLRGTS--SPVIVGGA--VLVG 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 226 LPDGRVLCLDSYSGDKMWE---------SELRRrsmgsIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGV 296
Cdd:COG1520  189 FANGKLVALDLANGQPLWEqrvaqprgrTELER-----LVDVDGTPVVDGGVVYAVAYQGRLAALDLRSGRVLWSRDLSS 263

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499769786 297 ---LSLskeDEETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYL 362
Cdd:COG1520  264 ytgLAV---DGNNLYVTDDDGRVWALDRRNGAELWKQDA--------LLYRgltAPVVLGDYVVVGDFEGYL 324
PRK11138 PRK11138
outer membrane biogenesis protein BamB; Provisional
 87-398 1.59e-18

outer membrane biogenesis protein BamB; Provisional


Pssm-ID: 236857 [Multi-domain]  Cd Length: 394  Bit Score: 86.52  E-value: 1.59e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  87 DVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRRSVYSSSLIHSRGVILCAIDNV--------LYGLDPSTGQVKWSSTL 158
Cdd:PRK11138  70 NKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVyigsekgqVYALNAEDGEVAWQTKV 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 159 ------RNFISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGKhyVIVVLPDGRVL 232
Cdd:PRK11138 149 agealsRPVVSDGLVLVH--------TSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGG--AIVGGDNGRVS 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 233 CLDSYSGDKMWE---------SELRRrsmgsIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKED 303
Cdd:PRK11138 219 AVLMEQGQLIWQqrisqptgaTEIDR-----LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVD 293

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 304 EETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISG 380
Cdd:PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSD--------LLHRlltAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDS 365

                        330
                 ....*....|....*...
gi 499769786 381 AQSLRYPIKADASIYVAA 398
Cdd:PRK11138 366 SGFLSEPVVADDKLLIQA 383
BamB_YfgL cd10276
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ...
 98-404 1.05e-17

Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.


Pssm-ID: 199834 [Multi-domain]  Cd Length: 358  Bit Score: 83.92  E-value: 1.05e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  98 LTALNSGDTSKVLWYVALAGGRRSVYSSSLIHSRG-VILCAIDNVLYGLDPSTGQVKWSSTLRN--FISGNLVLlneGQS 174
Cdd:cd10276    5 LPEPTPEFDPEVLWSKSVGNGGMAGIDLTPVVAGDmVYAADANGQVSAFNATTGKIIWETSLSGkgFLGGTPAV---GNG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 175 VAFM-TIDGYLCVFDVETGGLLWHREESSVQVRVKsdlsVAYSSGKHYVIVVlpDGRVLCLDSYSGDKMWESElrrrSMG 253
Cdd:cd10276   82 KIFVgTESGYLYALDAKDGSELWRTEVSDSQLLSP----PTYADGKIYVGTG--DGRLYYCNAETGKVVWNRT----STA 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 254 SIGSI--EITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKEDEE-------------TLFVVTDTGELLA 318
Cdd:cd10276  152 PELSLrgGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTELPRmidssvtyvvvggYLYSTSYQGYLVA 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 319 YDVDSKVRLWKlslGKFGKKKCLrwraPVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISGAQSLRYP-IKADASIYVA 397
Cdd:cd10276  232 LDFESGQFLWS---RKASGGTST----STDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGRVLSSPaIYVGVYIYVT 304


                 ....*..
gi 499769786 398 AGKMGFV 404
Cdd:cd10276  305 DNAEGYL 311
PQQ COG1520
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ...
 88-321 7.79e-16

Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441129 [Multi-domain]  Cd Length: 370  Bit Score: 78.32  E-value: 7.79e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  88 VIVTLDdqGRLTALNSgDTSKVLWYVALAGgrrSVYSSSLIHSRGVILCAIDNVLYGLDPSTGQVKWSS-------TLRN 160
Cdd:COG1520  101 VVGTED--GEVIALDA-DDGEELWRARLSS---EVLAAPAVAGGRVVVRTGDGRVYALDAATGERLWSYqrpvpalTLRG 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 161 F----ISGNLVL------------LNEG-----QSVAF-----------------MTIDGYLCV---------FDVETGG 193
Cdd:COG1520  175 TsspvIVGGAVLvgfangklvaldLANGqplweQRVAQprgrtelerlvdvdgtpVVDGGVVYAvayqgrlaaLDLRSGR 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 194 LLWHREESSVQvrvksDLSVAYssgkHYVIVVLPDGRVLCLDSYSGDKMWESE-LRRRSMGSigsieitPVVAGSEVFVV 272
Cdd:COG1520  255 VLWSRDLSSYT-----GLAVDG----NNLYVTDDDGRVWALDRRNGAELWKQDaLLYRGLTA-------PVVLGDYVVVG 318

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 499769786 273 DDSGALSSIDLETGKItwsedLGVLSLSKE--------DEETLFVVTDTGELLAYDV 321
Cdd:COG1520  319 DFEGYLHWLSRDDGSL-----VARLRVDGSgiraapvvVGDTLYVQTRDGTLAALRL 370
PQQ_2 pfam13360
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
 181-396 1.98e-14

PQQ-like domain; This domain contains several repeats of the PQQ repeat.


Pssm-ID: 433144 [Multi-domain]  Cd Length: 233  Bit Score: 72.05  E-value: 1.98e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  181 DGYLCVFDVETGGLLWhreessvQVRVKSDLS--VAYSSGkhYVIVVLPDGRVLCLDSYSGDKMWESELRrrsmgsiGSI 258
Cdd:pfam13360   2 DGVVTALDAATGAELW-------RVDLETGLGggVAVDGG--RLFVATGGGQLVALDAATGKLLWRQTLS-------GEV 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  259 EITPVVAGSEVFVVDDSGALSSIDLETGKITWSED-------LGVLSLSKEDEETLFVVTDTGELLAYDVDSKVRLWKLS 331
Cdd:pfam13360  66 LGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQrsgeplaLRSSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWEAP 145

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  332 LGK-FGKKKCLRWR----APVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISGAQSlryPIKADASIYV 396
Cdd:pfam13360 146 LAApRGTNELERLVditgTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPNG---PILDGDLLYV 212
assembly_YfgL TIGR03300
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ...
 96-320 6.48e-12

outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274511 [Multi-domain]  Cd Length: 377  Bit Score: 66.49  E-value: 6.48e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786   96 GRLTALNSgDTSKVLWYVALAGgrrSVYSSSLIHSRGVILCAIDNVLYGLDPSTGQVKWSS-------TLRNF----ISG 164
Cdd:TIGR03300 115 GEVIALDA-EDGKELWRAKLSS---EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYsrvtpplTLRGSaspvIAD 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  165 NLVL------------LNEG-----QSVAFMT----------IDG-------YLCV---------FDVETGGLLWHREES 201
Cdd:TIGR03300 191 GGVLvgfaggklvaldLQTGqplweQRVALPKgrtelerlvdVDGdpvvdggQVYAvsyqgrvaaLDLRSGRVLWKRDAS 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  202 SVQvrvksDLSVAYSsgkhYVIVVLPDGRVLCLDSYSGDKMWE-SELRRRSMGSigsieitPVVAGSEVFVVDDSGALSS 280
Cdd:TIGR03300 271 SYQ-----GPAVDDN----RLYVTDADGVVVALDRRSGSELWKnDELKYRQLTA-------PAVLGGYLVVGDFEGYLHW 334

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 499769786  281 IDLETGKI---TWSEDLGVLSLSKEDEETLFVVTDTGELLAYD 320
Cdd:TIGR03300 335 LDRDDGSFvarLKTDGSGIASPPVVVGDGLLVQTRDGDLYAFR 377
PQQ_DH_like cd00216
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ...
 82-391 6.09e-11

PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.


Pssm-ID: 199833 [Multi-domain]  Cd Length: 434  Bit Score: 63.78  E-value: 6.09e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  82 PGDVSDVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRRSVYSSSLIHSRG-------VILCAIDNVLYGLDPSTGQVKW 154
Cdd:cd00216   27 PIVVDGVMYATTSFSRVFALDA-DDGKEIWSYDPALKDGWFEACCDLVNRGvavwggkVYIGVLDGRVYALNAETGKVAW 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 155 SS-----------TLRNFISGNLVLLneGQSVAFMTIDGYLCVFDVETGGLLWHR-----------EESSVQVRVKSDL- 211
Cdd:cd00216  106 KVknadvlggytaTSAPVVVDGLVII--GSSGDEFGVRGYLTAYDVATGEEKWRFylvmpdpnllpGKDSTVTDRNTPTg 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 212 --------------SVAYSSGKHYVIV------------------VLPDGRVLCLDSYSGDKMWESELRRRSmGSIGSIE 259
Cdd:cd00216  184 dehtwtsgggtgwsSAAYDAELNLIYVgggnptpwnwggnrtpgdNLYTSSIVAVNADTGEMKWQYQTTPHD-AWDYDGD 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 260 ITPVVA-----GSEVFVV---DDSGALSSIDLETGKITWSEDLGVLSLSKEDEetLFVVTDTGELLAYDVDSKVRLWKls 331
Cdd:cd00216  263 NTPVLAdikvkGKKVKVLfapAKNGNFYVLDRRNGELVSARPLVPDSYDPDRE--LFYVPANGRIMALDPVTGVVVWE-- 338

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499769786 332 lgkfgKKKCLR-WRAPVMVSGKLWLL-SMEGYLVGVNAFSG-VIEESYMISGAQSlrYPIKAD 391
Cdd:cd00216  339 -----KSELHPlLGGPLSTAGNLVFVgTSDGYLKAYNADTGeKLWQQKVPSGFQA--EPVTYE 394
PQQ_DH_like cd00216
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ...
 88-396 6.07e-08

PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.


Pssm-ID: 199833 [Multi-domain]  Cd Length: 434  Bit Score: 54.54  E-value: 6.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  88 VIVTLDDqGRLTALNSgDTSKVLWYVALAGGRRSVYSSS---------LIHSRGVILcAIDNVLYGLDPSTGQVKWSstl 158
Cdd:cd00216   84 VYIGVLD-GRVYALNA-ETGKVAWKVKNADVLGGYTATSapvvvdglvIIGSSGDEF-GVRGYLTAYDVATGEEKWR--- 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 159 RNFISGNLVLLNEGQSVAFM----TIDGYLCVF----------------------------------------------- 187
Cdd:cd00216  158 FYLVMPDPNLLPGKDSTVTDrntpTGDEHTWTSgggtgwssaaydaelnliyvgggnptpwnwggnrtpgdnlytssiva 237

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 188 -DVETGGLLWHREES--------SVQVRVKSDLSVaysSGKHYVIVVLPD--GRVLCLDSYSGDKMWESELRRRSmgsig 256
Cdd:cd00216  238 vNADTGEMKWQYQTTphdawdydGDNTPVLADIKV---KGKKVKVLFAPAknGNFYVLDRRNGELVSARPLVPDS----- 309

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 257 sieitpVVAGSEVFVVDDSGALSSIDLETGKITWSEDL------GVLSLSKedeETLFVVTDTGELLAYDVDSKVRLWKL 330
Cdd:cd00216  310 ------YDPDRELFYVPANGRIMALDPVTGVVVWEKSElhpllgGPLSTAG---NLVFVGTSDGYLKAYNADTGEKLWQQ 380

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786 331 SLGKFGKKKCLRWRapvmVSGKLWLLSMEGYLVGVNAFsgvieesymiSGAQSLRYPIKADASIYV 396
Cdd:cd00216  381 KVPSGFQAEPVTYE----VDGEQYVLIQAGGGGAFPLW----------GGMADLTRGTQMGGTVVV 432
PA2928_fam NF041516
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa ...
 50-321 1.58e-05

PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa PAO1, as the family member most frequently cited in the literature, although PA2928 itself is significantly shorter at the N-terminus than most other members of this family, and is probably non-functional. WP_017001489.1 represents an intact equivalent to the PA2928 pseudogene.


Pssm-ID: 469402 [Multi-domain]  Cd Length: 345  Bit Score: 46.59  E-value: 1.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  50 GLFGRSSGSSDVD-GTFSKVKTIRGISTSLTIV----PGDVSDVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRrsVYS 124
Cdd:NF041516  18 GGSYLAGPEPSIEaQSGAVFYTVDGRDVALVPYerfgANGMSNGITSGMSQFRLAAVDL-ATGEKLWDKKLSDEL--SWE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 125 SSLIHS--RGVILcAIDNVLYGLDPSTGQVKWSS----TLRNFISGNLV-------LLNEGQSVAFMTIDGylcvfdvet 191
Cdd:NF041516  95 AYLLGAtdRYLYV-ATDKGLYVLDLATGKVVADEkeleGLGPALKDNLSaaraayaYDDDNRALYFYGLDG--------- 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 192 ggLLWHREESSVQVRVKSD---------LSVAYSSGKHYVIV-------VLPDGRVLCLDSYSGDKMWESELRRRSMGSI 255
Cdd:NF041516 165 --RYYQIDLDTLTATPADPataptyaglLFAEEAAKGRPATFlsdkeeaALEDERVALRERPRGALYGGVLVRVGGDGDL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 256 GSIE-------------ITPVVAGSEVFVV--------DDSGALSSIDLETGKITWSEDLGVLSLS-------------- 300
Cdd:NF041516 243 TPLGdtvfldggflldpTTLEGAADGHVLVvhkrtvndDANLLLSAVDLETGKVTWTLPLGYSSPSraftlpdgltllga 322

                        330       340
                 ....*....|....*....|...
gi 499769786 301 --KEDEETLFVVTDTGELLAYDV 321
Cdd:NF041516 323 gnPEGGDLLKIDLKDGKLTRYDV 345
Gcd COG4993
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
96-198 1.09e-03

Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];


Pssm-ID: 444017 [Multi-domain]  Cd Length: 515  Bit Score: 40.91  E-value: 1.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  96 GRLTALNsGDTSKVLW-YVALAGGRRSVYSSSlihSRGV-------ILCAIDNVLYGLDPSTGQVKWSSTLRN------- 160
Cdd:COG4993   65 NRVFALD-AATGKELWrYDPKLPDDAACCDVV---NRGVayydgriFLGTLDGRLVALDAKTGKVCWDVKVGDpkkgyti 140

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 499769786 161 ----FISGNLVLLneGQSVAFMTIDGYLCVFDVETGGLLWHR 198
Cdd:COG4993  141 tsapLVVKDKVIV--GGSGGEFGPRGVVRAYDARTGKLVWRF 180
PQQ_ADH_I cd10277
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ...
 170-291 1.63e-03

Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.


Pssm-ID: 199835 [Multi-domain]  Cd Length: 529  Bit Score: 40.36  E-value: 1.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 170 NEGQSVAFMTIDGYLCV---------FDVETGGLLW---HR--EESSVQVRVKSDlSVAYSSGKhyVIVVLPDGRVLCLD 235
Cdd:cd10277   49 QRGQESQPIVNDGVMYVttsynrvfaIDAKTGKELWkykHRlpEDIRPCCDVVNR-GVALYGDK--VYFGTLDAHLVALD 125

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786 236 SYSGDKMWeselrRRSMGSIG---SIEITPVVAGSEVfVVDDSGA-------LSSIDLETGKITWS 291
Cdd:cd10277  126 AKTGKVVW-----KKKVADYKagySMTLAPLVVKGKV-IVGVSGGefgvrgfIAALDAETGKEVWR 185
PQQ_2 pfam13360
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
 274-372 3.69e-03

PQQ-like domain; This domain contains several repeats of the PQQ repeat.


Pssm-ID: 433144 [Multi-domain]  Cd Length: 233  Bit Score: 38.54  E-value: 3.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786  274 DSGALSSIDLETGKITWSEDLGVLSLS--KEDEETLFVVTDTGELLAYDVDSKVRLWKLSLGKFGKKkclrwrAPVMVSG 351
Cdd:pfam13360   1 ADGVVTALDAATGAELWRVDLETGLGGgvAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLG------APLVAGG 74

                          90       100
                  ....*....|....*....|.
gi 499769786  352 KLWLLSMEGYLVGVNAFSGVI 372
Cdd:pfam13360  75 RVFVVAGDGSLIALDAADGRR 95
PQQ_DH_like cd00216
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ...
 170-295 4.01e-03

PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.


Pssm-ID: 199833 [Multi-domain]  Cd Length: 434  Bit Score: 39.13  E-value: 4.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 170 NEGQSVAFMTIDG--YLC-----VF--DVETGGLLWH--REESSVQVRVKSDL---SVAYSSGKHYVIVVlpDGRVLCLD 235
Cdd:cd00216   20 NRGSELTPIVVDGvmYATtsfsrVFalDADDGKEIWSydPALKDGWFEACCDLvnrGVAVWGGKVYIGVL--DGRVYALN 97

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786 236 SYSGDKMWESELRrrSMGSIGSIEITP------VVAGSEVFVVDDSGALSSIDLETGKITWSEDLG 295
Cdd:cd00216   98 AETGKVAWKVKNA--DVLGGYTATSAPvvvdglVIIGSSGDEFGVRGYLTAYDVATGEEKWRFYLV 161
PQQ_MDH cd10278
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ...
 213-290 5.02e-03

Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.


Pssm-ID: 199836 [Multi-domain]  Cd Length: 553  Bit Score: 38.85  E-value: 5.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 213 VAYSSGKhyVIVVLPDGRVLCLDSYSGDKMWESELRRRSMGSigSIEITPVVAGSEVfVVDDSGA-------LSSIDLET 285
Cdd:cd10278   98 LAYADGK--IFFNQLDGHLVALDAKTGKEVWKVKNGDPKVGE--TLTMAPLVVKDKV-IVGISGGefgvrgyVTAYDLKT 172


                 ....*
gi 499769786 286 GKITW 290
Cdd:cd10278  173 GKLVW 177
PRK11138 PRK11138
outer membrane biogenesis protein BamB; Provisional
 260-329 5.30e-03

outer membrane biogenesis protein BamB; Provisional


Pssm-ID: 236857 [Multi-domain]  Cd Length: 394  Bit Score: 38.76  E-value: 5.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 260 ITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDL----GVLSLSKE---------DEETLFVVTDTGELLAYDVDSKVR 326
Cdd:PRK11138  63 LHPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLsekdGWFSKNKSallsggvtvAGGKVYIGSEKGQVYALNAEDGEV 142


                 ...
gi 499769786 327 LWK 329
Cdd:PRK11138 143 AWQ 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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