|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10015 |
PRK10015 |
oxidoreductase; Provisional |
3-431 |
3.95e-111 |
|
oxidoreductase; Provisional
Pssm-ID: 182194 [Multi-domain] Cd Length: 429 Bit Score: 333.48 E-value: 3.95e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 3 EHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKNVQGAILYANAVEQIIPGFRDDAPLERHVIEQRMWMLDDR 82
Cdd:PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 83 SYVGSHFRSENFNEEKPNRYTIIRAQFDKWFNRQARDAGAMVICETTVLDLIRnDAGKVVGVRCdreGGEVY-AEVVILC 161
Cdd:PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA---GDDILeANVVILA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 162 DGVNALVGQRSGIRSEISPEHAALAVKEMHFLPREVINERFNVRDDEGVVIEALGTVTSGMLGTGFLYTNGESISLGIGC 241
Cdd:PRK10015 160 DGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVC 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 242 IVSDFVETKIGPAKLLERFKAHPSIAPLIRGSEVKEYAAHLIPEGGYNAVPQLYGAGWLICGDAAHF-LNAAHR-EGSNL 319
Cdd:PRK10015 240 GLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFcLNLGFTvRGMDL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 320 ALTSGRLAAETIIALKSEgKAMTEANLALYRQKLEESFVLKDLKKYKDLPhTLWRNKQFVTTYPELMAKAAENFFRVDGV 399
Cdd:PRK10015 320 AIASAQAAATTVIAAKER-ADFSASSLAQYKRELEQSCVMRDMQHFRKIP-ALMENPRLFSQYPRMVADIMNDMFTIDGK 397
|
410 420 430
....*....|....*....|....*....|..
gi 499709186 400 DKLTKEKDIVRSFRKArGVLGLVGDAVKVARA 431
Cdd:PRK10015 398 PNQPVRKMIMGHAKKI-GLINLLKDGIKGATA 428
|
|
| PRK10157 |
PRK10157 |
putative oxidoreductase FixC; Provisional |
5-431 |
8.83e-102 |
|
putative oxidoreductase FixC; Provisional
Pssm-ID: 182273 [Multi-domain] Cd Length: 428 Bit Score: 309.53 E-value: 8.83e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKNVQGAILYANAVEQIIPGFRDDAPLERHVIEQRMWMLDDRSY 84
Cdd:PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 85 VGSHFrsENFNEEKPNR--YTIIRAQFDKWFNRQARDAGAMVICETTVLDLIRNDaGKVVGVRCDreGGEVYAEVVILCD 162
Cdd:PRK10157 86 MTMDY--CNGDETSPSQrsYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEAD--GDVIEAKTVILAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 163 GVNALVGQRSGIRSEISPEHAALAVKEMHFLPREVINERFNVRDDEGVVIEALGTVTSGMLGTGFLYTNGESISLGIGCI 242
Cdd:PRK10157 161 GVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 243 VSDFVETKIGPAKLLERFKAHPSIAPLIRGSEVKEYAAHLIPEGGYNAVPQLYGAGWLICGDAAHF-LNAAHR-EGSNLA 320
Cdd:PRK10157 241 LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMcMNLGFTiRGMDLA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 321 LTSGRLAAETII-ALKSEGkaMTEANLALYRQKLEESfVLKDLKKYKDLPHTLwRNKQFVTTYPELMAKAAENFFRVDGV 399
Cdd:PRK10157 321 IAAGEAAAKTVLsAMKSDD--FSKQKLAEYRQHLESG-PLRDMRMYQKLPAFL-DNPRMFSGYPELAVGVARDLFTIDGS 396
|
410 420 430
....*....|....*....|....*....|..
gi 499709186 400 DKLTKEKDIVRSFRKArGVLGLVGDAVKVARA 431
Cdd:PRK10157 397 APELMRKKILRHGKKV-GFINLIKDGMKGVTV 427
|
|
| FixC |
COG0644 |
Dehydrogenase (flavoprotein) [Energy production and conversion]; |
12-355 |
1.24e-60 |
|
Dehydrogenase (flavoprotein) [Energy production and conversion];
Pssm-ID: 440409 [Multi-domain] Cd Length: 281 Bit Score: 198.65 E-value: 1.24e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 12 AGMAGNAASYTLAKAGLNVLQIERGEYPGSKNVQGAILyANAVEQIIPgFRDDAPLERHVIEQRMWMLDDrsyvgshfRS 91
Cdd:COG0644 1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGLL-PRALEELEP-LGLDEPLERPVRGARFYSPGG--------KS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 92 ENFNEEKPNRYTIIRAQFDKWFNRQARDAGAMVICETTVLDLIRNDaGKVVgVRCDReGGEVYAEVVILCDGVNALVGQR 171
Cdd:COG0644 71 VELPPGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDD-GRVV-VRTGD-GEEIRADYVVDADGARSLLARK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 172 SGIRSEIS-PEHAALAVKEMHFLPREvinerfnVRDDEGVVIEALGTVTSGmlGTGFLYT-NGESISLGigcivsdfvet 249
Cdd:COG0644 148 LGLKRRSDePQDYALAIKEHWELPPL-------EGVDPGAVEFFFGEGAPG--GYGWVFPlGDGRVSVG----------- 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 250 kigpakllerfkahpsiaplirgsevkeyaahlIPEGGYNavPQLYGAGWLICGDAAHFLNAAHREGSNLALTSGRLAAE 329
Cdd:COG0644 208 ---------------------------------IPLGGPR--PRLVGDGVLLVGDAAGFVDPLTGEGIHLAMKSGRLAAE 252
|
330 340
....*....|....*....|....*.
gi 499709186 330 TIIALKSEGKAmTEANLALYRQKLEE 355
Cdd:COG0644 253 AIAEALEGGDF-SAEALAEYERRLRE 277
|
|
| GG-red-SF |
TIGR02032 |
geranylgeranyl reductase family; This model represents a subfamily which includes ... |
5-331 |
2.89e-32 |
|
geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]
Pssm-ID: 273936 [Multi-domain] Cd Length: 295 Bit Score: 123.97 E-value: 2.89e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKNVQGAILyANAVEQiipgfrDDAPLERHVIEQRmwmlddrsy 84
Cdd:TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALS-PRALEE------LDLPGELIVNLVR--------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 85 vGSHFRSenFNEEKPNR-------YTIIRAQFDKWFNRQARDAGAMVICETTVLDLIRNDAGKVVGVRCDRegGEVYAEV 157
Cdd:TIGR02032 65 -GARFFS--PNGDSVEIpietelaYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVVIVRGSE--GTVTAKI 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 158 VILCDGVNALVGQRSGIRSEisPEHAALAVKEMHFLPREVINERF-NVRDDEGVVIEALGTVtsgmlgtgFLYTNGEsIS 236
Cdd:TIGR02032 140 VIGADGSRSIVAKKLGLKKE--PREYGVAARAEVEMPDEEVDEDFvEVYIDRGIVPGGYGWV--------FPKGDGT-AN 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 237 LGIGcivSDFVETKIGPAKLLERF-KAHPSIAplirGSEVKEYAAHLIPEGGYNAVpqLYGAGWLICGDAAHFLNAAHRE 315
Cdd:TIGR02032 209 VGVG---SRSAEEGEDPKKYLKDFlARRPELK----DAETVEVCGALIPIGRPDEK--LVRGNVLLVGDAAGHVNPLTGE 279
|
330
....*....|....*.
gi 499709186 316 GSNLALTSGRLAAETI 331
Cdd:TIGR02032 280 GIYYAMRSGDIAAEVV 295
|
|
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
2-195 |
9.12e-13 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 68.81 E-value: 9.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 2 AEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEyPGSKNVQGAILYANAVEqiipGFRD----DAPLERHVIEQRMW 77
Cdd:COG0654 1 MMRTDVLIVGGGPAGLALALALARAGIRVTVVERAP-PPRPDGRGIALSPRSLE----LLRRlglwDRLLARGAPIRGIR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 78 MLDDRSyvGSHFRSENFNEEK-PNRYTIIRAQFDKWFNRQARDAGAMVICETTVLDLIRNDAGkvVGVRCdREGGEVYAE 156
Cdd:COG0654 76 VRDGSD--GRVLARFDAAETGlPAGLVVPRADLERALLEAARALGVELRFGTEVTGLEQDADG--VTVTL-ADGRTLRAD 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499709186 157 VVILCDGVNALVGQRSGIRSE--ISPEHAALAVKEMHFLPR 195
Cdd:COG0654 151 LVVGADGARSAVRRLLGIGFTgrDYPQRALWAGVRTELRAR 191
|
|
| SdhA |
COG1053 |
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ... |
3-164 |
1.89e-10 |
|
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 440673 [Multi-domain] Cd Length: 443 Bit Score: 62.54 E-value: 1.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 3 EHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKNV--QGAILYANAVEQIIPG-------FRD---------D 64
Cdd:COG1053 2 HEYDVVVVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGGHTAaaQGGINAAGTNVQKAAGedspeehFYDtvkggdglaD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 65 APLERHVIEQ---RMWMLDDRS---YVGSHFRSENFNEEKPNRYTIIR----AQFDKWFNRQARDAGAMVICETTVLDLI 134
Cdd:COG1053 82 QDLVEALAEEapeAIDWLEAQGvpfSRTPDGRLPQFGGHSVGRTCYAGdgtgHALLATLYQAALRLGVEIFTETEVLDLI 161
|
170 180 190
....*....|....*....|....*....|
gi 499709186 135 RNDaGKVVGVRCDREGGEvyaEVVILCDGV 164
Cdd:COG1053 162 VDD-GRVVGVVARDRTGE---IVRIRAKAV 187
|
|
| PLN00093 |
PLN00093 |
geranylgeranyl diphosphate reductase; Provisional |
7-358 |
1.21e-08 |
|
geranylgeranyl diphosphate reductase; Provisional
Pssm-ID: 177713 [Multi-domain] Cd Length: 450 Bit Score: 56.68 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 7 VIIVGAGMAGNAASYTLAKAGLNVLQIERgEYPGSKNVQGAILYANAVEqiipgFrdDAPLE---RHVieQRMWMLDDRS 83
Cdd:PLN00093 42 VAVIGGGPAGACAAETLAKGGIETFLIER-KLDNAKPCGGAIPLCMVGE-----F--DLPLDiidRKV--TKMKMISPSN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 84 yvgshfRSENFNEE-KPNRY--TIIRAQFDKWFNRQARDAGAMVI-------------CETTVLDLIRNDAGKVVGVRCD 147
Cdd:PLN00093 112 ------VAVDIGKTlKPHEYigMVRREVLDSFLRERAQSNGATLInglftridvpkdpNGPYVIHYTSYDSGSGAGTPKT 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 148 REggevyAEVVILCDGVNALVGQrsgirsEISPEHAALAVkemhflpreVINERFNVRDDEGVVIEALGTVTSGMLGT-- 225
Cdd:PLN00093 186 LE-----VDAVIGADGANSRVAK------DIDAGDYDYAI---------AFQERIKIPDDKMEYYEDLAEMYVGDDVSpd 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 226 --GFLYTNGESISLGIGCIVSdfvETKIGPAKLLERFKAHPSIAplirGSEVKEYAAHLIPEggyNAVPQLYGAGWLICG 303
Cdd:PLN00093 246 fyGWVFPKCDHVAVGTGTVVN---KPAIKKYQRATRNRAKDKIA----GGKIIRVEAHPIPE---HPRPRRVRGRVALVG 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 499709186 304 DAAHFLNAAHREGSNLALTSGRLAAETIIALKSEGKAM-TEANLALYRQKLEESFV 358
Cdd:PLN00093 316 DAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMvDEADLREYLRKWDKKYW 371
|
|
| CzcO |
COG2072 |
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ... |
1-40 |
3.86e-08 |
|
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];
Pssm-ID: 441675 [Multi-domain] Cd Length: 414 Bit Score: 55.25 E-value: 3.86e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 499709186 1 MAEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG 40
Cdd:COG2072 3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVG 42
|
|
| FAD_binding_2 |
pfam00890 |
FAD binding domain; This family includes members that bind FAD. This family includes the ... |
6-173 |
8.91e-08 |
|
FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Pssm-ID: 395718 [Multi-domain] Cd Length: 398 Bit Score: 53.83 E-value: 8.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 6 DVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKNV--QGAI-LYAN-----------AVEQIIPGFRDDAPLE--- 68
Cdd:pfam00890 1 DVLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGGATAwsSGGIdALGNppqggidspelHPTDTLKGLDELADHPyve 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 69 ---RHVIE-----QRMWMLDDRSYVGsHFRSENFNEEKPNR---YTIIRAQFDkWFN---------RQARDAGAMVICET 128
Cdd:pfam00890 81 afvEAAPEavdwlEALGVPFSRTEDG-HLDLRPLGGLSATWrtpHDAADRRRG-LGTghallarllEGLRKAGVDFQPRT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 499709186 129 TVLDLIRNDaGKVVG--VRCDREGGEV----YAEVVILCDGVNALVGQRSG 173
Cdd:pfam00890 159 AADDLIVED-GRVTGavVENRRNGREVriraIAAVLLATGGFGRLAELLLP 208
|
|
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
3-212 |
2.50e-07 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 52.21 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 3 EHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGE------------------YPGSKNVQGAILYA-NAVEQIIPG--- 60
Cdd:COG0665 1 ATADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRpgsgasgrnagqlrpglaALADRALVRLAREAlDLWRELAAElgi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 61 ------------FRDDAPLERHV--------------------IEQRMWMLDDRSYVGSHF--RSENFNeekPNRYTiir 106
Cdd:COG0665 81 dcdfrrtgvlylARTEAELAALRaeaealralglpvelldaaeLREREPGLGSPDYAGGLYdpDDGHVD---PAKLV--- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 107 aqfdKWFNRQARDAGAMVICETTVLDLIRnDAGKVVGVRCDRegGEVYAEVVILCDGVNA-LVGQRSGIRSEISPEHA-A 184
Cdd:COG0665 155 ----RALARAARAAGVRIREGTPVTGLER-EGGRVTGVRTER--GTVRADAVVLAAGAWSaRLLPMLGLRLPLRPVRGyV 227
|
250 260 270
....*....|....*....|....*....|..
gi 499709186 185 LAVKEMHFLPRE--VINERFNVR--DDEGVVI 212
Cdd:COG0665 228 LVTEPLPDLPLRpvLDDTGVYLRptADGRLLV 259
|
|
| Ubi-OHases |
TIGR01988 |
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ... |
6-177 |
1.15e-06 |
|
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]
Pssm-ID: 273913 [Multi-domain] Cd Length: 385 Bit Score: 50.28 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 6 DVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKNVQG-----AILYANAV--EQIipGFRDDAPLERHVIEQRMWM 78
Cdd:TIGR01988 1 DIVIVGGGMVGLALALALARSGLKVALIEATPLPAPADPGFdnrvsALSAASIRllEKL--GVWDKIEPARAQPIRDIHV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 79 LDDRSYVGSHFRSENFNEEK-----PNRyTIIRAqfdkWFNRQARDAGAMVICETTVLDLIRNDAgkvvGVRCDREGGEV 153
Cdd:TIGR01988 79 SDGGSFGALRFDADEIGLEAlgyvvENR-VLQQA----LWERLQELPNVTLLCPARVVELPRHSD----HVELTLDDGQQ 149
|
170 180
....*....|....*....|....*
gi 499709186 154 Y-AEVVILCDGVNALVGQRSGIRSE 177
Cdd:TIGR01988 150 LrARLLVGADGANSKVRQLAGIPTT 174
|
|
| PLN02464 |
PLN02464 |
glycerol-3-phosphate dehydrogenase |
2-163 |
3.40e-06 |
|
glycerol-3-phosphate dehydrogenase
Pssm-ID: 215257 [Multi-domain] Cd Length: 627 Bit Score: 49.39 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 2 AEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG------SKNVQGAILY-ANAVEQIIPGfrdDAPLERHVIEQ 74
Cdd:PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSgtssrsTKLIHGGVRYlEKAVFQLDYG---QLKLVFHALEE 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 75 RMWMLDD------------------------------------RSYVGSHFRS-----ENF------NEEKPNRYTII-- 105
Cdd:PLN02464 146 RKQLIENaphlchalpimtpcydwfevpyywaglkaydlvagpRLLHLSRYYSakeslELFptlakkGKDGSLKGTVVyy 225
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499709186 106 RAQF-DKWFNR----QARDAGAMVICETTVLDLIRNDA-GKVVGVRC-DREGG---EVYAEVVILCDG 163
Cdd:PLN02464 226 DGQMnDSRLNValacTAALAGAAVLNYAEVVSLIKDEStGRIVGARVrDNLTGkefDVYAKVVVNAAG 293
|
|
| solA |
PRK11259 |
N-methyl-L-tryptophan oxidase; |
3-35 |
3.87e-06 |
|
N-methyl-L-tryptophan oxidase;
Pssm-ID: 236887 [Multi-domain] Cd Length: 376 Bit Score: 48.68 E-value: 3.87e-06
10 20 30
....*....|....*....|....*....|...
gi 499709186 3 EHFDVIIVGAGMAGNAASYTLAKAGLNVLQIER 35
Cdd:PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDR 34
|
|
| TrxB |
COG0492 |
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; |
5-166 |
4.63e-06 |
|
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440258 [Multi-domain] Cd Length: 305 Bit Score: 48.19 E-value: 4.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEyPGsknvqGAILYANAVEQiIPGFRDDaplerhvieqrmwmlddrsy 84
Cdd:COG0492 1 YDVVIIGAGPAGLTAAIYAARAGLKTLVIEGGE-PG-----GQLATTKEIEN-YPGFPEG-------------------- 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 85 vgshfrsenfneekpnrytiIRAQ--FDKwFNRQARDAGAmVICETTVLDLIRNDAGKVVGVrcdREGGEVYAEVVILCD 162
Cdd:COG0492 54 --------------------ISGPelAER-LREQAERFGA-EILLEEVTSVDKDDGPFRVTT---DDGTEYEAKAVIIAT 108
|
....
gi 499709186 163 GVNA 166
Cdd:COG0492 109 GAGP 112
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
6-212 |
4.65e-06 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 48.16 E-value: 4.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 6 DVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG---SKNVQGAI----------------LYANA-VEQIIPGFRDDA 65
Cdd:pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGsgaSGRNAGLIhpglrylepselarlaLEALDlWEELEEELGIDC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 66 PLERH------------VIEQRMWMLDDRSYVGSHFRSENFNEEKPNRYTIIRAQFD------------KWFNRQARDAG 121
Cdd:pfam01266 81 GFRRCgvlvlardeeeeALEKLLAALRRLGVPAELLDAEELRELEPLLPGLRGGLFYpdgghvdparllRALARAAEALG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 122 AMVICETTVLDLIRndAGKVVGVRCDREggevyAEVVILCDGVNALVGQRSGIRSEISP-EHAALAVKEMHFLPrEVINE 200
Cdd:pfam01266 161 VRIIEGTEVTGIEE--EGGVWGVVTTGE-----ADAVVNAAGAWADLLALPGLRLPVRPvRGQVLVLEPLPEAL-LILPV 232
|
250
....*....|..
gi 499709186 201 RFNVRDDEGVVI 212
Cdd:pfam01266 233 PITVDPGRGVYL 244
|
|
| COG1233 |
COG1233 |
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ... |
3-62 |
5.49e-06 |
|
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440846 [Multi-domain] Cd Length: 491 Bit Score: 48.31 E-value: 5.49e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 3 EHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGsknvqGAilyANAVEQiiPGFR 62
Cdd:COG1233 2 MMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPG-----GR---ARTFER--PGFR 51
|
|
| NAD_binding_8 |
pfam13450 |
NAD(P)-binding Rossmann-like domain; |
9-40 |
1.60e-05 |
|
NAD(P)-binding Rossmann-like domain;
Pssm-ID: 433218 [Multi-domain] Cd Length: 67 Bit Score: 42.52 E-value: 1.60e-05
10 20 30
....*....|....*....|....*....|..
gi 499709186 9 IVGAGMAGNAASYTLAKAGLNVLQIERGEYPG 40
Cdd:pfam13450 1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLG 32
|
|
| COG2509 |
COG2509 |
FAD-dependent dehydrogenase [General function prediction only]; |
4-36 |
1.79e-05 |
|
FAD-dependent dehydrogenase [General function prediction only];
Pssm-ID: 441999 [Multi-domain] Cd Length: 466 Bit Score: 46.64 E-value: 1.79e-05
10 20 30
....*....|....*....|....*....|...
gi 499709186 4 HFDVIIVGAGMAGNAASYTLAKAGLNVLQIERG 36
Cdd:COG2509 30 KYDVVIVGAGPAGLFAALELAEAGLKPLVLERG 62
|
|
| Lpd |
COG1249 |
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ... |
2-38 |
2.54e-05 |
|
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation
Pssm-ID: 440861 [Multi-domain] Cd Length: 456 Bit Score: 46.23 E-value: 2.54e-05
10 20 30
....*....|....*....|....*....|....*..
gi 499709186 2 AEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEY 38
Cdd:COG1249 1 MKDYDLVVIGAGPGGYVAAIRAAQLGLKVALVEKGRL 37
|
|
| PRK07121 |
PRK07121 |
FAD-binding protein; |
6-163 |
2.84e-05 |
|
FAD-binding protein;
Pssm-ID: 180854 [Multi-domain] Cd Length: 492 Bit Score: 46.03 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 6 DVIIVGAGMAGNAASYTLAKAGLNVLQIER-GEYPGSKNVQGAILYA---NAVeQIIPGFRDD---------APLERHVI 72
Cdd:PRK07121 22 DVVVVGFGAAGACAAIEAAAAGARVLVLERaAGAGGATALSGGVIYLgggTAV-QKAAGFEDSpenmyaylrVAVGPGVD 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 73 EQRMwmlddRSYV-GS--HFR---------SENFNEEK----PNRYTII---------------------RAQFDKWFN- 114
Cdd:PRK07121 101 EEKL-----RRYCeGSveHFDwleglgvpfERSFFPEKtsypPNDEGLYysgnekawpfaeiakpaprghRVQGPGDSGg 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499709186 115 ---------RQARDAGAMVICETTVLDLIRNDAGKVVGVRCDREGGEVYAEV---VILCDG 163
Cdd:PRK07121 176 gamlmdplaKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRArkgVVLAAG 236
|
|
| PTZ00367 |
PTZ00367 |
squalene epoxidase; Provisional |
5-35 |
3.38e-05 |
|
squalene epoxidase; Provisional
Pssm-ID: 240384 [Multi-domain] Cd Length: 567 Bit Score: 46.00 E-value: 3.38e-05
10 20 30
....*....|....*....|....*....|.
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIER 35
Cdd:PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64
|
|
| HI0933_like |
pfam03486 |
HI0933-like protein; |
5-163 |
3.47e-05 |
|
HI0933-like protein;
Pssm-ID: 427330 [Multi-domain] Cd Length: 406 Bit Score: 45.65 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKnvqgaIL-----------YANAVEQIIPGFRDD-----APLE 68
Cdd:pfam03486 1 FDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRK-----ILisgggrcnvtnLSEEPDNFLSRYPGNpkflkSALS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 69 RHVIEQRMWMLDDRS---YVGSHFR-------SEnfneekpnryTIIRAqfdkWFNRqARDAGAMVICETTVLDLIRNDa 138
Cdd:pfam03486 76 RFTPWDFIAFFESLGvplKEEDHGRlfpdsdkAS----------DIVDA----LLNE-LKELGVKIRLRTRVLSVEKDD- 139
|
170 180
....*....|....*....|....*
gi 499709186 139 GKVVGVRCDreGGEVYAEVVILCDG 163
Cdd:pfam03486 140 DGRFRVKTG--GEELEADSLVLATG 162
|
|
| PRK12834 |
PRK12834 |
putative FAD-binding dehydrogenase; Reviewed |
1-34 |
3.70e-05 |
|
putative FAD-binding dehydrogenase; Reviewed
Pssm-ID: 183782 [Multi-domain] Cd Length: 549 Bit Score: 46.04 E-value: 3.70e-05
10 20 30
....*....|....*....|....*....|....
gi 499709186 1 MAEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIE 34
Cdd:PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLD 34
|
|
| PRK06292 |
PRK06292 |
dihydrolipoamide dehydrogenase; Validated |
3-40 |
3.84e-05 |
|
dihydrolipoamide dehydrogenase; Validated
Pssm-ID: 235774 [Multi-domain] Cd Length: 460 Bit Score: 45.94 E-value: 3.84e-05
10 20 30
....*....|....*....|....*....|....*...
gi 499709186 3 EHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG 40
Cdd:PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG 39
|
|
| COG3380 |
COG3380 |
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]; |
3-36 |
6.22e-05 |
|
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
Pssm-ID: 442607 [Multi-domain] Cd Length: 331 Bit Score: 44.87 E-value: 6.22e-05
10 20 30
....*....|....*....|....*....|....
gi 499709186 3 EHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERG 36
Cdd:COG3380 2 SMPDIAIIGAGIAGLAAARALQDAGHEVTVFEKS 35
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
1-174 |
6.38e-05 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 45.14 E-value: 6.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 1 MAEHFDVIIVGAGMAGNAASYTLAKA-GLNVLQIERGE-------------------Y-PGS----KNVQGAI------- 48
Cdd:COG0579 1 MMEMYDVVIIGAGIVGLALARELSRYeDLKVLVLEKEDdvaqessgnnsgvihaglyYtPGSlkarLCVEGNElfyelcr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 49 --------------------------LYANAVEQIIPGFRddaPLERHVIEQRMWMLDDRSYVGSHFRSE---NFneekp 99
Cdd:COG0579 81 elgipfkrcgklvvatgeeevaflekLYERGKANGVPGLE---ILDREELRELEPLLSDEGVAALYSPSTgivDP----- 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499709186 100 nrYTIIRAqfdkwFNRQARDAGAMVICETTVLDLIRNDAGKVVGVrcdrEGGEVYAEVVILCDGVNAL-VGQRSGI 174
Cdd:COG0579 153 --GALTRA-----LAENAEANGVELLLNTEVTGIEREGDGWEVTT----NGGTIRARFVINAAGLYADrLAQMAGI 217
|
|
| BetA |
COG2303 |
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ... |
1-36 |
6.45e-05 |
|
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 441878 [Multi-domain] Cd Length: 531 Bit Score: 45.20 E-value: 6.45e-05
10 20 30
....*....|....*....|....*....|....*..
gi 499709186 1 MAEHFDVIIVGAGMAGNAASYTLAK-AGLNVLQIERG 36
Cdd:COG2303 1 MLEEYDYVIVGAGSAGCVLANRLSEdAGLRVLLLEAG 37
|
|
| YobN |
COG1231 |
Monoamine oxidase [Amino acid transport and metabolism]; |
2-40 |
8.89e-05 |
|
Monoamine oxidase [Amino acid transport and metabolism];
Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 44.53 E-value: 8.89e-05
10 20 30
....*....|....*....|....*....|....*....
gi 499709186 2 AEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG 40
Cdd:COG1231 5 ARGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVG 43
|
|
| PRK05249 |
PRK05249 |
Si-specific NAD(P)(+) transhydrogenase; |
4-40 |
1.41e-04 |
|
Si-specific NAD(P)(+) transhydrogenase;
Pssm-ID: 235373 [Multi-domain] Cd Length: 461 Bit Score: 43.99 E-value: 1.41e-04
10 20 30
....*....|....*....|....*....|....*..
gi 499709186 4 HFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG 40
Cdd:PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVG 41
|
|
| PRK12843 |
PRK12843 |
FAD-dependent oxidoreductase; |
5-40 |
1.44e-04 |
|
FAD-dependent oxidoreductase;
Pssm-ID: 237225 [Multi-domain] Cd Length: 578 Bit Score: 43.96 E-value: 1.44e-04
10 20 30
....*....|....*....|....*....|....*.
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG 40
Cdd:PRK12843 17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVG 52
|
|
| PRK06370 |
PRK06370 |
FAD-containing oxidoreductase; |
1-36 |
3.68e-04 |
|
FAD-containing oxidoreductase;
Pssm-ID: 235787 [Multi-domain] Cd Length: 463 Bit Score: 42.50 E-value: 3.68e-04
10 20 30
....*....|....*....|....*....|....*.
gi 499709186 1 MAEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERG 36
Cdd:PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37
|
|
| GIDA |
pfam01134 |
Glucose inhibited division protein A; |
6-160 |
3.87e-04 |
|
Glucose inhibited division protein A;
Pssm-ID: 250388 [Multi-domain] Cd Length: 391 Bit Score: 42.54 E-value: 3.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 6 DVIIVGAGMAGNAASYTLAKAGLNVL----QIER-GEYPGSKNVqGAILYANAVEQIipgfrdDApLERHVIEqrmwmLD 80
Cdd:pfam01134 1 DVIVIGGGHAGCEAALAAARMGAKVLlithNTDTiAELSCNPSI-GGIAKGHLVREI------DA-LGGLMGK-----AA 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 81 DRSYVgsHFRSENFNEEKPNRYTiiRAQFDKW-FNRQARDagaMV-------ICETTVLDLIRNDaGKVVGVRcDREGGE 152
Cdd:pfam01134 68 DKTGI--QFRMLNTSKGPAVRAL--RAQVDRDlYSKEMTE---TLenhpnltLIQGEVTDLIPEN-GKVKGVV-TEDGEE 138
|
....*...
gi 499709186 153 VYAEVVIL 160
Cdd:pfam01134 139 YKAKAVVL 146
|
|
| soxA_mon |
TIGR01377 |
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ... |
5-42 |
4.65e-04 |
|
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]
Pssm-ID: 130444 [Multi-domain] Cd Length: 380 Bit Score: 42.12 E-value: 4.65e-04
10 20 30
....*....|....*....|....*....|....*...
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSK 42
Cdd:TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSR 38
|
|
| PLN02985 |
PLN02985 |
squalene monooxygenase |
6-35 |
6.95e-04 |
|
squalene monooxygenase
Pssm-ID: 178566 [Multi-domain] Cd Length: 514 Bit Score: 41.81 E-value: 6.95e-04
10 20 30
....*....|....*....|....*....|
gi 499709186 6 DVIIVGAGMAGNAASYTLAKAGLNVLQIER 35
Cdd:PLN02985 45 DVIIVGAGVGGSALAYALAKDGRRVHVIER 74
|
|
| ubiF |
PRK08020 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed |
4-35 |
7.23e-04 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Pssm-ID: 181199 [Multi-domain] Cd Length: 391 Bit Score: 41.51 E-value: 7.23e-04
10 20 30
....*....|....*....|....*....|..
gi 499709186 4 HFDVIIVGAGMAGNAASYTLAKAGLNVLQIER 35
Cdd:PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEH 36
|
|
| COG3349 |
COG3349 |
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ... |
6-40 |
7.38e-04 |
|
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];
Pssm-ID: 442577 [Multi-domain] Cd Length: 445 Bit Score: 41.76 E-value: 7.38e-04
10 20 30
....*....|....*....|....*....|....*
gi 499709186 6 DVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG 40
Cdd:COG3349 5 RVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLG 39
|
|
| PRK09126 |
PRK09126 |
FAD-dependent hydroxylase; |
4-35 |
7.39e-04 |
|
FAD-dependent hydroxylase;
Pssm-ID: 236385 [Multi-domain] Cd Length: 392 Bit Score: 41.47 E-value: 7.39e-04
10 20 30
....*....|....*....|....*....|..
gi 499709186 4 HFDVIIVGAGMAGNAASYTLAKAGLNVLQIER 35
Cdd:PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIER 34
|
|
| Pyr_redox_2 |
pfam07992 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
5-37 |
9.22e-04 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 400379 [Multi-domain] Cd Length: 301 Bit Score: 41.15 E-value: 9.22e-04
10 20 30
....*....|....*....|....*....|...
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIERGE 37
Cdd:pfam07992 1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEG 33
|
|
| FAD_oxidored |
pfam12831 |
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ... |
6-178 |
1.32e-03 |
|
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.
Pssm-ID: 432816 [Multi-domain] Cd Length: 420 Bit Score: 40.67 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 6 DVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKNVQGAI-----LYANAvEQIIPGFRDDaplerhvIEQRmwMLD 80
Cdd:pfam12831 1 DVVVVGGGPAGVAAAIAAARAGAKVLLVERRGFLGGMLTSGLVgpdmgFYLNK-EQVVGGIARE-------FRQR--LRA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 81 DRSYVGSHFRSENFNEEKPNRYTIIraqFDKWfnrqARDAGAMVICETTVLDLIRNDaGKVVGV--RCDREGGEVYAEVV 158
Cdd:pfam12831 71 RGGLPGPYGLRGGWVPFDPEVAKAV---LDEM----LAEAGVTVLLHTRVVGVVKEG-GRITGVtvETKGGRITIRAKVF 142
|
170 180
....*....|....*....|
gi 499709186 159 ILCDGvNALVGQRSGIRSEI 178
Cdd:pfam12831 143 IDATG-DGDLAALAGAPYRV 161
|
|
| COG3573 |
COG3573 |
Predicted oxidoreductase [General function prediction only]; |
2-35 |
1.40e-03 |
|
Predicted oxidoreductase [General function prediction only];
Pssm-ID: 442794 [Multi-domain] Cd Length: 551 Bit Score: 40.93 E-value: 1.40e-03
10 20 30
....*....|....*....|....*....|....
gi 499709186 2 AEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIER 35
Cdd:COG3573 3 AMDADVIVVGAGLAGLVAAAELADAGRRVLLLDQ 36
|
|
| PLN02576 |
PLN02576 |
protoporphyrinogen oxidase |
6-42 |
1.68e-03 |
|
protoporphyrinogen oxidase
Pssm-ID: 215314 [Multi-domain] Cd Length: 496 Bit Score: 40.77 E-value: 1.68e-03
10 20 30
....*....|....*....|....*....|....*...
gi 499709186 6 DVIIVGAGMAGNAASYTLAKA-GLNVLQIERGEYPGSK 42
Cdd:PLN02576 14 DVAVVGAGVSGLAAAYALASKhGVNVLVTEARDRVGGN 51
|
|
| mnmC |
PRK01747 |
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ... |
6-50 |
1.70e-03 |
|
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;
Pssm-ID: 234978 [Multi-domain] Cd Length: 662 Bit Score: 40.60 E-value: 1.70e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 499709186 6 DVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG---SKNVQGAiLY 50
Cdd:PRK01747 262 DAAIIGGGIAGAALALALARRGWQVTLYEADEAPAqgaSGNRQGA-LY 308
|
|
| PRK07843 |
PRK07843 |
3-oxosteroid 1-dehydrogenase; |
1-40 |
1.81e-03 |
|
3-oxosteroid 1-dehydrogenase;
Pssm-ID: 236111 [Multi-domain] Cd Length: 557 Bit Score: 40.40 E-value: 1.81e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 499709186 1 MAEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPG 40
Cdd:PRK07843 4 TVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYG 43
|
|
| glycerol3P_GlpB |
TIGR03378 |
glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; Members of this protein family are ... |
5-37 |
2.61e-03 |
|
glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. [Energy metabolism, Anaerobic]
Pssm-ID: 213807 Cd Length: 419 Bit Score: 40.00 E-value: 2.61e-03
10 20 30
....*....|....*....|....*....|...
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIERGE 37
Cdd:TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33
|
|
| PRK02106 |
PRK02106 |
choline dehydrogenase; Validated |
1-36 |
2.72e-03 |
|
choline dehydrogenase; Validated
Pssm-ID: 235000 [Multi-domain] Cd Length: 560 Bit Score: 39.81 E-value: 2.72e-03
10 20 30
....*....|....*....|....*....|....*..
gi 499709186 1 MAEHFDVIIVGAGMAGNAASYTL-AKAGLNVLQIERG 36
Cdd:PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLsEDPDVSVLLLEAG 38
|
|
| GltD |
COG0493 |
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ... |
7-80 |
5.35e-03 |
|
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis
Pssm-ID: 440259 [Multi-domain] Cd Length: 434 Bit Score: 38.96 E-value: 5.35e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499709186 7 VIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKNVQGailyanaveqiIPGFRddapLERHVIEQRM-WMLD 80
Cdd:COG0493 124 VAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGGLLRYG-----------IPEFR----LPKDVLDREIeLIEA 183
|
|
| PRK05329 |
PRK05329 |
glycerol-3-phosphate dehydrogenase subunit GlpB; |
4-48 |
5.57e-03 |
|
glycerol-3-phosphate dehydrogenase subunit GlpB;
Pssm-ID: 235412 Cd Length: 422 Bit Score: 38.68 E-value: 5.57e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 499709186 4 HFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGeypgsknvQGAI 48
Cdd:PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG--------QGAL 38
|
|
| GlpB |
COG3075 |
Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; |
5-51 |
6.43e-03 |
|
Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism];
Pssm-ID: 442309 Cd Length: 415 Bit Score: 38.62 E-value: 6.43e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNVLQIERGeypgsknvQGAILYA 51
Cdd:COG3075 3 FDVVVIGGGLAGLTAAIRAAEAGLRVAIVSAG--------QSALHFS 41
|
|
| Thi4 |
pfam01946 |
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme. |
6-40 |
6.56e-03 |
|
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
Pssm-ID: 460393 Cd Length: 232 Bit Score: 37.84 E-value: 6.56e-03
10 20 30
....*....|....*....|....*....|....*.
gi 499709186 6 DVIIVGAGMAGNAASYTLAKA-GLNVLQIERGEYPG 40
Cdd:pfam01946 19 DVVIVGAGSSGLTAAYYLAKNrGLKVAIIERSVSPG 54
|
|
| PRK06416 |
PRK06416 |
dihydrolipoamide dehydrogenase; Reviewed |
1-37 |
6.85e-03 |
|
dihydrolipoamide dehydrogenase; Reviewed
Pssm-ID: 235798 [Multi-domain] Cd Length: 462 Bit Score: 38.59 E-value: 6.85e-03
10 20 30
....*....|....*....|....*....|....*..
gi 499709186 1 MAEHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGE 37
Cdd:PRK06416 1 FAFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37
|
|
| sdhA |
PRK07573 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
5-30 |
7.67e-03 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 236054 [Multi-domain] Cd Length: 640 Bit Score: 38.65 E-value: 7.67e-03
10 20
....*....|....*....|....*.
gi 499709186 5 FDVIIVGAGMAGNAASYTLAKAGLNV 30
Cdd:PRK07573 36 FDVIVVGTGLAGASAAATLGELGYNV 61
|
|
| PRK05714 |
PRK05714 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional |
4-36 |
7.68e-03 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Pssm-ID: 168201 [Multi-domain] Cd Length: 405 Bit Score: 38.27 E-value: 7.68e-03
10 20 30
....*....|....*....|....*....|...
gi 499709186 4 HFDVIIVGAGMAGNAASYTLAKAGLNVLQIERG 36
Cdd:PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGG 34
|
|
| PRK08849 |
PRK08849 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional |
3-174 |
9.86e-03 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Pssm-ID: 181564 [Multi-domain] Cd Length: 384 Bit Score: 37.83 E-value: 9.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 3 EHFDVIIVGAGMAGNAASYTLAKAGLNVLQIERGEYPGSKNVQGAILYANAVEQIIPGFRDDAPLERHVIEQRM------ 76
Cdd:PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVcpykrl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499709186 77 --WmldDRSYVGSHFRSENFNEEK-----PNRytIIR----AQFDKWFNRQardagamVICETTVLDLIRNDAGKVVGVr 145
Cdd:PRK08849 82 etW---EHPECRTRFHSDELNLDQlgyivENR--LIQlglwQQFAQYPNLT-------LMCPEKLADLEFSAEGNRVTL- 148
|
170 180
....*....|....*....|....*....
gi 499709186 146 cdREGGEVYAEVVILCDGVNALVGQRSGI 174
Cdd:PRK08849 149 --ESGAEIEAKWVIGADGANSQVRQLAGI 175
|
|
| |
