RnfH family protein [Magnetospirillum magneticum]
RnfH family protein( domain architecture ID 10508429)
RnfH family protein, a member of the ubiquitin superfamily, is involved in transporting electrons for various reductive reactions such as nitrogen fixation and may also play a role in the SmpB-tmRNA-based tagging and degradation system of bacteria
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Ub-RnfH | pfam03658 | RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of ... |
1-81 | 5.34e-48 | |||
RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation. : Pssm-ID: 427429 Cd Length: 83 Bit Score: 147.19 E-value: 5.34e-48
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Name | Accession | Description | Interval | E-value | |||
Ub-RnfH | pfam03658 | RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of ... |
1-81 | 5.34e-48 | |||
RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation. Pssm-ID: 427429 Cd Length: 83 Bit Score: 147.19 E-value: 5.34e-48
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PasI | COG2914 | Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH ... |
1-81 | 5.57e-48 | |||
Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily [Defense mechanisms]; Pssm-ID: 442158 Cd Length: 92 Bit Score: 147.57 E-value: 5.57e-48
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PRK01777 | PRK01777 | RnfH family protein; |
1-79 | 1.06e-31 | |||
RnfH family protein; Pssm-ID: 234982 Cd Length: 95 Bit Score: 106.60 E-value: 1.06e-31
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Name | Accession | Description | Interval | E-value | |||
Ub-RnfH | pfam03658 | RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of ... |
1-81 | 5.34e-48 | |||
RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation. Pssm-ID: 427429 Cd Length: 83 Bit Score: 147.19 E-value: 5.34e-48
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PasI | COG2914 | Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH ... |
1-81 | 5.57e-48 | |||
Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily [Defense mechanisms]; Pssm-ID: 442158 Cd Length: 92 Bit Score: 147.57 E-value: 5.57e-48
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PRK01777 | PRK01777 | RnfH family protein; |
1-79 | 1.06e-31 | |||
RnfH family protein; Pssm-ID: 234982 Cd Length: 95 Bit Score: 106.60 E-value: 1.06e-31
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MoaD | COG1977 | Molybdopterin synthase sulfur carrier subunit MoaD [Coenzyme transport and metabolism]; ... |
16-75 | 1.26e-03 | |||
Molybdopterin synthase sulfur carrier subunit MoaD [Coenzyme transport and metabolism]; Molybdopterin synthase sulfur carrier subunit MoaD is part of the Pathway/BioSystem: Molybdopterin biosynthesis Pssm-ID: 441580 [Multi-domain] Cd Length: 82 Bit Score: 34.41 E-value: 1.26e-03
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Blast search parameters | ||||
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