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Conserved domains on  [gi|499342478|ref|WP_011032018|]
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nitrous oxide reductase family maturation protein NosD [Methanosarcina mazei]

Protein Classification

nitrous oxide reductase family maturation protein NosD( domain architecture ID 11465762)

nitrous oxide reductase family maturation protein NosD is required for the assembly of the copper chromophores of nitrous oxide reductase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 10-396 1.18e-41

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


:

Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 154.69  E-value: 1.18e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  10 FLALVVFSSALGIGAAAEItvqPGQSIQDVLNSSVSGDEIIISPGNYADNLRITTGdITVRsasGNPEDTIvtAASPAED 89
Cdd:COG3420    1 LALLLLLLLLAGAAAAATA---PGDSLQAAIDAAPPGDTIEVPPGTYEGNIVIDKP-LTLI---GEGGAVI--DGGGKGT 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  90 VFYVEASNVTITGLGINGAGYDR----AGVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTaVEGKRAVNVERSN 165
Cdd:COG3420   72 VITITADNVTVRGLTITGSGDSLtdddAGIYVRGADNAVIENNRIENNLFGIYLEGSDNNVIRNNT-ISGNRDLRADRGN 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 166 yntisgnnvsdqrfgiyfliseaniasnnqvsgsvdhGIVLESCSDTSLVNNTVSSNEDnGIHIVGSTNNSLTGNTADsN 245
Cdd:COG3420  151 -------------------------------------GIHLWNSPGNVIEGNTISGGRD-GIYLEFSDNNVIRNNTIR-N 191

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 246 LVYGIYLRDSNGNnltdnkalnnsrgifllrsgesELSGNEVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLLNSTYC 325
Cdd:COG3420  192 LRYGIHYMYSNDN----------------------LVEGNTFRDNGAGIALMYSKGNTVRGNTILGNSGYGILLKESSDS 249

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499342478 326 NISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRGLNLQ-DSNYNILVNNTALKNRYGAYLLRSGWNVFSNN 396
Cdd:COG3420  250 VIEGNTISGNGKGIFIYNSNRNTIRGNLFAGNGIGIHLTaGSEGNRIYGNNFIGNRTQVKYVGGRDNEWSAD 321
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 310-596 3.57e-33

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


:

Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 130.42  E-value: 3.57e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 310 LQNNVSGISLLNSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNI-------QEGGRGLNLQDSNYNILVNNTALKNRYG 382
Cdd:COG3420   94 LTDDDAGIYVRGADNAVIENNRIENNLFGIYLEGSDNNVIRNNTIsgnrdlrADRGNGIHLWNSPGNVIEGNTISGGRDG 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 383 AYLLRSGWNVFSNNIASESDdhgivlenssnsnelsgntadsnraYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNAL 462
Cdd:COG3420  174 IYLEFSDNNVIRNNTIRNLR-------------------------YGIHYMYSNDNLVEGNTFRDNGAGIALMYSKGNTV 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 463 LNNTVLNNGEYAILLAYSSGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVsGLHMTSTSNNNTFFNNYLNNNVNA 542
Cdd:COG3420  229 RGNTILGNSGYGILLKESSDSVIEGNTISGNGKGIFIYNSNRNTIRGNLFAGNGI-GIHLTAGSEGNRIYGNNFIGNRTQ 307

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499342478 543 DVKQGSVGNVWNTtktkgtsitggpYLGGNFWGKPDGTgfsqttaDSDVDGIAD 596
Cdd:COG3420  308 VKYVGGRDNEWSA------------DGRGNYWSDYTGF-------DLDGDGIGD 342
 
Name Accession Description Interval E-value
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 10-396 1.18e-41

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 154.69  E-value: 1.18e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  10 FLALVVFSSALGIGAAAEItvqPGQSIQDVLNSSVSGDEIIISPGNYADNLRITTGdITVRsasGNPEDTIvtAASPAED 89
Cdd:COG3420    1 LALLLLLLLLAGAAAAATA---PGDSLQAAIDAAPPGDTIEVPPGTYEGNIVIDKP-LTLI---GEGGAVI--DGGGKGT 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  90 VFYVEASNVTITGLGINGAGYDR----AGVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTaVEGKRAVNVERSN 165
Cdd:COG3420   72 VITITADNVTVRGLTITGSGDSLtdddAGIYVRGADNAVIENNRIENNLFGIYLEGSDNNVIRNNT-ISGNRDLRADRGN 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 166 yntisgnnvsdqrfgiyfliseaniasnnqvsgsvdhGIVLESCSDTSLVNNTVSSNEDnGIHIVGSTNNSLTGNTADsN 245
Cdd:COG3420  151 -------------------------------------GIHLWNSPGNVIEGNTISGGRD-GIYLEFSDNNVIRNNTIR-N 191

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 246 LVYGIYLRDSNGNnltdnkalnnsrgifllrsgesELSGNEVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLLNSTYC 325
Cdd:COG3420  192 LRYGIHYMYSNDN----------------------LVEGNTFRDNGAGIALMYSKGNTVRGNTILGNSGYGILLKESSDS 249

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499342478 326 NISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRGLNLQ-DSNYNILVNNTALKNRYGAYLLRSGWNVFSNN 396
Cdd:COG3420  250 VIEGNTISGNGKGIFIYNSNRNTIRGNLFAGNGIGIHLTaGSEGNRIYGNNFIGNRTQVKYVGGRDNEWSAD 321
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 310-596 3.57e-33

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 130.42  E-value: 3.57e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 310 LQNNVSGISLLNSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNI-------QEGGRGLNLQDSNYNILVNNTALKNRYG 382
Cdd:COG3420   94 LTDDDAGIYVRGADNAVIENNRIENNLFGIYLEGSDNNVIRNNTIsgnrdlrADRGNGIHLWNSPGNVIEGNTISGGRDG 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 383 AYLLRSGWNVFSNNIASESDdhgivlenssnsnelsgntadsnraYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNAL 462
Cdd:COG3420  174 IYLEFSDNNVIRNNTIRNLR-------------------------YGIHYMYSNDNLVEGNTFRDNGAGIALMYSKGNTV 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 463 LNNTVLNNGEYAILLAYSSGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVsGLHMTSTSNNNTFFNNYLNNNVNA 542
Cdd:COG3420  229 RGNTILGNSGYGILLKESSDSVIEGNTISGNGKGIFIYNSNRNTIRGNLFAGNGI-GIHLTAGSEGNRIYGNNFIGNRTQ 307

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499342478 543 DVKQGSVGNVWNTtktkgtsitggpYLGGNFWGKPDGTgfsqttaDSDVDGIAD 596
Cdd:COG3420  308 VKYVGGRDNEWSA------------DGRGNYWSDYTGF-------DLDGDGIGD 342
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 382-579 4.02e-27

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 109.43  E-value: 4.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  382 GAYLLRSGWNVFSNNIASESDDHGIVleNSSNSNELSGNTAdSNRAYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNA 461
Cdd:pfam05048  21 GIQLWNTEGNVISNNDIINSRDGIYL--DASNNNTITGNRI-SNLRYGIHLMNSNDNTISDNVFSGNTAGIALMSSSNNT 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  462 LLNNTVLNNGEYAILLAYSSGNDILENEASSSN-RGIHLSTSDDNTLSGNNIVSNGVsGLHMTSTSNNNTFFNNYLNNNV 540
Cdd:pfam05048  98 LENNTISGNTNYGILLSDSSNNTISNNTISNNNgKGIFLYNSDYNTITGNRITSNGI-GIHFLAGSNGNTIYNNYFINNS 176

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 499342478  541 NADVKQGSVGNVWNTTKTKGTSITGGPYLGGNFWGKPDG 579
Cdd:pfam05048 177 ENVKYVGTNDNYWNTTKTTGYNIIGGPYIGGNYWSDYDG 215
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 114-269 4.57e-18

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 83.24  E-value: 4.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  114 GVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTAVEGKRAVNVERSNYNTISGNNVSDQRFGIYFLISEANIASN 193
Cdd:pfam05048  21 GIQLWNTEGNVISNNDIINSRDGIYLDASNNNTITGNRISNLRYGIHLMNSNDNTISDNVFSGNTAGIALMSSSNNTLEN 100

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499342478  194 NQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGNTADSNlVYGIYLRD-SNGNNLTDNKALNNS 269
Cdd:pfam05048 101 NTISGNTNYGILLSDSSNNTISNNTISNNNGKGIFLYNSDYNTITGNRITSN-GIGIHFLAgSNGNTIYNNYFINNS 176
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 429-471 6.00e-06

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 43.65  E-value: 6.00e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 499342478  429 GIYLTGSNNNDISNNKVSENSRGIYLMTSNGNALLNNTVLNNG 471
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNNSYGIYLYDSSNNTLSNNTASNNG 43
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 249-292 4.59e-05

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 40.96  E-value: 4.59e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 499342478  249 GIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRN 292
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNNSYGIYLYDSSNNTLSNNTASNNGY 44
 
Name Accession Description Interval E-value
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 10-396 1.18e-41

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 154.69  E-value: 1.18e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  10 FLALVVFSSALGIGAAAEItvqPGQSIQDVLNSSVSGDEIIISPGNYADNLRITTGdITVRsasGNPEDTIvtAASPAED 89
Cdd:COG3420    1 LALLLLLLLLAGAAAAATA---PGDSLQAAIDAAPPGDTIEVPPGTYEGNIVIDKP-LTLI---GEGGAVI--DGGGKGT 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  90 VFYVEASNVTITGLGINGAGYDR----AGVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTaVEGKRAVNVERSN 165
Cdd:COG3420   72 VITITADNVTVRGLTITGSGDSLtdddAGIYVRGADNAVIENNRIENNLFGIYLEGSDNNVIRNNT-ISGNRDLRADRGN 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 166 yntisgnnvsdqrfgiyfliseaniasnnqvsgsvdhGIVLESCSDTSLVNNTVSSNEDnGIHIVGSTNNSLTGNTADsN 245
Cdd:COG3420  151 -------------------------------------GIHLWNSPGNVIEGNTISGGRD-GIYLEFSDNNVIRNNTIR-N 191

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 246 LVYGIYLRDSNGNnltdnkalnnsrgifllrsgesELSGNEVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLLNSTYC 325
Cdd:COG3420  192 LRYGIHYMYSNDN----------------------LVEGNTFRDNGAGIALMYSKGNTVRGNTILGNSGYGILLKESSDS 249

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499342478 326 NISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRGLNLQ-DSNYNILVNNTALKNRYGAYLLRSGWNVFSNN 396
Cdd:COG3420  250 VIEGNTISGNGKGIFIYNSNRNTIRGNLFAGNGIGIHLTaGSEGNRIYGNNFIGNRTQVKYVGGRDNEWSAD 321
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 310-596 3.57e-33

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 130.42  E-value: 3.57e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 310 LQNNVSGISLLNSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNI-------QEGGRGLNLQDSNYNILVNNTALKNRYG 382
Cdd:COG3420   94 LTDDDAGIYVRGADNAVIENNRIENNLFGIYLEGSDNNVIRNNTIsgnrdlrADRGNGIHLWNSPGNVIEGNTISGGRDG 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 383 AYLLRSGWNVFSNNIASESDdhgivlenssnsnelsgntadsnraYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNAL 462
Cdd:COG3420  174 IYLEFSDNNVIRNNTIRNLR-------------------------YGIHYMYSNDNLVEGNTFRDNGAGIALMYSKGNTV 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 463 LNNTVLNNGEYAILLAYSSGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVsGLHMTSTSNNNTFFNNYLNNNVNA 542
Cdd:COG3420  229 RGNTILGNSGYGILLKESSDSVIEGNTISGNGKGIFIYNSNRNTIRGNLFAGNGI-GIHLTAGSEGNRIYGNNFIGNRTQ 307

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499342478 543 DVKQGSVGNVWNTtktkgtsitggpYLGGNFWGKPDGTgfsqttaDSDVDGIAD 596
Cdd:COG3420  308 VKYVGGRDNEWSA------------DGRGNYWSDYTGF-------DLDGDGIGD 342
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 382-579 4.02e-27

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 109.43  E-value: 4.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  382 GAYLLRSGWNVFSNNIASESDDHGIVleNSSNSNELSGNTAdSNRAYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNA 461
Cdd:pfam05048  21 GIQLWNTEGNVISNNDIINSRDGIYL--DASNNNTITGNRI-SNLRYGIHLMNSNDNTISDNVFSGNTAGIALMSSSNNT 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  462 LLNNTVLNNGEYAILLAYSSGNDILENEASSSN-RGIHLSTSDDNTLSGNNIVSNGVsGLHMTSTSNNNTFFNNYLNNNV 540
Cdd:pfam05048  98 LENNTISGNTNYGILLSDSSNNTISNNTISNNNgKGIFLYNSDYNTITGNRITSNGI-GIHFLAGSNGNTIYNNYFINNS 176

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 499342478  541 NADVKQGSVGNVWNTTKTKGTSITGGPYLGGNFWGKPDG 579
Cdd:pfam05048 177 ENVKYVGTNDNYWNTTKTTGYNIIGGPYIGGNYWSDYDG 215
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 114-269 4.57e-18

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 83.24  E-value: 4.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  114 GVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTAVEGKRAVNVERSNYNTISGNNVSDQRFGIYFLISEANIASN 193
Cdd:pfam05048  21 GIQLWNTEGNVISNNDIINSRDGIYLDASNNNTITGNRISNLRYGIHLMNSNDNTISDNVFSGNTAGIALMSSSNNTLEN 100

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499342478  194 NQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGNTADSNlVYGIYLRD-SNGNNLTDNKALNNS 269
Cdd:pfam05048 101 NTISGNTNYGILLSDSSNNTISNNTISNNNGKGIFLYNSDYNTITGNRITSN-GIGIHFLAgSNGNTIYNNYFINNS 176
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 131-292 1.13e-15

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 76.30  E-value: 1.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  131 LNNALGIYLKNSTYNLILNNTAVEGKRAVNVERSNYNTISGNNVSDQRFGIYFLISEANIASNNQVSGSvDHGIVLESCS 210
Cdd:pfam05048  16 LSRGNGIQLWNTEGNVISNNDIINSRDGIYLDASNNNTITGNRISNLRYGIHLMNSNDNTISDNVFSGN-TAGIALMSSS 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  211 DTSLVNNTVSSNEDNGIHIVGSTNNSLTGNTADSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLL-RSGESELSGNEVSN 289
Cdd:pfam05048  95 NNTLENNTISGNTNYGILLSDSSNNTISNNTISNNNGKGIFLYNSDYNTITGNRITSNGIGIHFLaGSNGNTIYNNYFIN 174


                  ...
gi 499342478  290 NRN 292
Cdd:pfam05048 175 NSE 177
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 215-395 4.65e-15

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 74.76  E-value: 4.65e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  215 VNNTVSSNED---------NGIHIVGSTNNSLTGNTAdSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGN 285
Cdd:pfam05048   1 VNNAISGDTIgiynglsrgNGIQLWNTEGNVISNNDI-INSRDGIYLDASNNNTITGNRISNLRYGIHLMNSNDNTISDN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  286 EVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLLNSTYCNISENVLSGNTL-GIDLAFSSNSTIVNNNIQEGGRGL-NL 363
Cdd:pfam05048  80 VFSGNTAGIALMSSSNNTLENNTISGNTNYGILLSDSSNNTISNNTISNNNGkGIFLYNSDYNTITGNRITSNGIGIhFL 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 499342478  364 QDSNYNILVNNTALKNRYGAYLLRSGWNVFSN 395
Cdd:pfam05048 160 AGSNGNTIYNNYFINNSENVKYVGTNDNYWNT 191
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 292-445 1.77e-13

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 68.59  E-value: 1.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  292 NGILLTSAGNSSILYSTVLQNNVSGISLLNSTYCNISENVLSGNTL-GIDLAFSSNSTIVNNNI-QEGGRGLNLQDSNYN 369
Cdd:pfam13229   1 SGILLNGSSNATIKNNTISNNGGYGIYLRGSSNATIENNTITNNGGdGIEISGSSNNTISNNTIsNNGGGGIALRGSSNN 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499342478  370 ILVNNTALKN-RYGAYLLRSGWNVFSNNIASESDDHGIVLENSSNSNELSGNTADSNRAYGIYLT-GSNNNDISNNKV 445
Cdd:pfam13229  81 LIENNTISNNgGAGIYLSDSSNNTIENNIIHNNGGSGIVIEDSSNNVTISNNTVTNNKGAGILIVgGSSNNTVENNTF 158
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 113-263 9.75e-13

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 66.28  E-value: 9.75e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  113 AGVYLIRSNNCIIENNEFLNN-ALGIYLKNSTYNLILNNTAVE-GKRAVNVERSNYNTISGNNVSDQR-FGIYFLISEAN 189
Cdd:pfam13229   1 SGILLNGSSNATIKNNTISNNgGYGIYLRGSSNATIENNTITNnGGDGIEISGSSNNTISNNTISNNGgGGIALRGSSNN 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499342478  190 IASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHI-VGSTNNSLTGNTADSNLVYGIYLRDSNGNNLTDN 263
Cdd:pfam13229  81 LIENNTISNNGGAGIYLSDSSNNTIENNIIHNNGGSGIVIeDSSNNVTISNNTVTNNKGAGILIVGGSSNNTVEN 155
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 202-353 1.66e-11

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 62.81  E-value: 1.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  202 HGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGNTADSNLVYGIYLRDSNGNNLTDNK-ALNNSRGIFLLRSGES 280
Cdd:pfam13229   1 SGILLNGSSNATIKNNTISNNGGYGIYLRGSSNATIENNTITNNGGDGIEISGSSNNTISNNTiSNNGGGGIALRGSSNN 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499342478  281 ELSGNEVSNNRN-GILLTSAGNSSILYSTVLQNNVSGISLL-NSTYCNISENVLSGNTL-GIDLAFSSNSTIVNNN 353
Cdd:pfam13229  81 LIENNTISNNGGaGIYLSDSSNNTIENNIIHNNGGSGIVIEdSSNNVTISNNTVTNNKGaGILIVGGSSNNTVENN 156
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 381-529 1.85e-11

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 62.81  E-value: 1.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  381 YGAYLLRSGWNVFSNNIASESDDHGIVLENSSNsNELSGNTADSNRAYGIYLTGSNNNDISNNKVSEN-SRGIYLMTSNG 459
Cdd:pfam13229   1 SGILLNGSSNATIKNNTISNNGGYGIYLRGSSN-ATIENNTITNNGGDGIEISGSSNNTISNNTISNNgGGGIALRGSSN 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499342478  460 NALLNNTVLNNGEYAILLAYSSGNDILENEASS-SNRGIHLSTSDDN-TLSGNNIVSNGVSGLHMTSTSNNN 529
Cdd:pfam13229  80 NLIENNTISNNGGAGIYLSDSSNNTIENNIIHNnGGSGIVIEDSSNNvTISNNTVTNNKGAGILIVGGSSNN 151
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 158-306 1.95e-10

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 59.73  E-value: 1.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  158 AVNVERSNYNTISGNNVSD-QRFGIYFLISEANIASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNS 236
Cdd:pfam13229   2 GILLNGSSNATIKNNTISNnGGYGIYLRGSSNATIENNTITNNGGDGIEISGSSNNTISNNTISNNGGGGIALRGSSNNL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499342478  237 LTGNTADSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESEL--SGNEVSNNR-NGILLTSAGNSSILY 306
Cdd:pfam13229  82 IENNTISNNGGAGIYLSDSSNNTIENNIIHNNGGSGIVIEDSSNNVtiSNNTVTNNKgAGILIVGGSSNNTVE 154
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 429-471 6.00e-06

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 43.65  E-value: 6.00e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 499342478  429 GIYLTGSNNNDISNNKVSENSRGIYLMTSNGNALLNNTVLNNG 471
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNNSYGIYLYDSSNNTLSNNTASNNG 43
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 249-292 4.59e-05

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 40.96  E-value: 4.59e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 499342478  249 GIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRN 292
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNNSYGIYLYDSSNNTLSNNTASNNGY 44
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 64-618 7.68e-05

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 46.30  E-value: 7.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478   64 TGDITVRSASGNPEDTIVTAASPAEDVFYVEASNVTITGLGINGAGYDRAGVYLIRSNNCIIENNEFLNNALGIYLKNST 143
Cdd:COG3210   809 TTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATST 888

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  144 YNLILNNTAVEGKRAVNVERSNYNTISGNNVSDQRFGIYFLISEANIASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNE 223
Cdd:COG3210   889 GTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGA 968

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  224 DNGIHIVGSTNNSLTGNTADSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRNGILLTSAGNSS 303
Cdd:COG3210   969 SSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGV 1048

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  304 ILYSTVLQNNVSGISLLNSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRGLNLQDSNYNILVNNTALKNRYGA 383
Cdd:COG3210  1049 NASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVG 1128

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  384 YLLRSGWNVFSNNIASESDDHGIVLENSSNSNELSGNTADSNRAYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNALL 463
Cdd:COG3210  1129 ATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGGST 1208

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  464 NNTVLNNGEYAILLAYSSGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVSGLHMTSTSNNNTFFNNYLNNNVNAD 543
Cdd:COG3210  1209 TTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTVDI 1288

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499342478  544 VKQGSVGNVWNTTKTKGTSITGGPYLGGNFWGKPDGTGFSQTTADSDVDGIADGEFNISNSGYADYLPLVAVSDT 618
Cdd:COG3210  1289 GSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAA 1363
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 114-152 1.95e-04

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 39.42  E-value: 1.95e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 499342478  114 GVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTA 152
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNNSYGIYLYDSSNNTLSNNTA 39
AidA COG3468
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ...
 164-575 3.73e-04

Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442691 [Multi-domain]  Cd Length: 846  Bit Score: 43.78  E-value: 3.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 164 SNYNTISGNNVSDQRFGIYFLISEANIASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGNTAD 243
Cdd:COG3468   19 GGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGGNSTGGGGGNSGT 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 244 SNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLLNST 323
Cdd:COG3468   99 GGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGGGSGGGGGAGGGG 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 324 YCNISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRGLNLQDSNYNILVNNTALKNRYGAYLLRSGWNVFSNNIASESDD 403
Cdd:COG3468  179 GGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGGGGSAGGTGGGGLTGGGA 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 404 HGIVLEN------SSNSNELSGNTADSNRAYGIYLTGSNNNDISNNKVSENSRGiylmtSNGNALLNNTVLNNGEYAILL 477
Cdd:COG3468  259 AGTGGGGggtgtgSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGN-----GGGGGGGSNAGGGSGGGGGGG 333

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 478 AYSSGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVSGLHMTSTSNNNTFFNNYLNNNVNADVKQGSVGNVWNTTK 557
Cdd:COG3468  334 GGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTGNNGGGGVGGGGG 413

                        410
                 ....*....|....*...
gi 499342478 558 TKGTSITGGPYLGGNFWG 575
Cdd:COG3468  414 GGLTLTGGTLTVNGNYTG 431
AidA COG3468
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ...
 46-474 4.28e-04

Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442691 [Multi-domain]  Cd Length: 846  Bit Score: 43.78  E-value: 4.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  46 GDEIIISPGNYADNLRITTGDITVRSASGNPEDTIVTAASPAEDVFYVEASNVTITGLGINGAGYDRAGVYLIRSNNCII 125
Cdd:COG3468    1 TASGGGGGATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 126 ENNEFLNNALGIYLKNSTYNLILNNTAVEGKRAV-NVERSNYNTISGNNVSDQRFGIYFLISEANIASNNQVSGSVDHGI 204
Cdd:COG3468   81 SGGTGGNSTGGGGGNSGTGGTGGGGGGGGSGNGGgGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 205 VLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGNTADSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSG 284
Cdd:COG3468  161 TGSGGGGSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 285 NEVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLLNSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRGLNLQ 364
Cdd:COG3468  241 GGGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGGS 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478 365 DSNYNILVNNTALKNRYGAYLLRSGWNVFSNNIASESDDHGIVLENSSNSNELSGNTADSNRAYGIYLTGSNNNDISNNK 444
Cdd:COG3468  321 NAGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGT 400

                        410       420       430
                 ....*....|....*....|....*....|
gi 499342478 445 VSENSRGIYLMTSNGNALLNNTVLNNGEYA 474
Cdd:COG3468  401 GNNGGGGVGGGGGGGLTLTGGTLTVNGNYT 430
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 226-270 1.46e-03

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 36.72  E-value: 1.46e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 499342478  226 GIHIVGSTNNSLTGNTADSNLvYGIYLRDSNGNNLTDNKALNNSR 270
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNNS-YGIYLYDSSNNTLSNNTASNNGY 44
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 405-450 1.76e-03

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 36.72  E-value: 1.76e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 499342478  405 GIVLENSSNSNeLSGNTADSNRaYGIYLTGSNNNDISNNKVSENSR 450
Cdd:TIGR03804   1 GIYLESSSNNT-LSNNTASNNS-YGIYLYDSSNNTLSNNTASNNGY 44
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 17-565 4.50e-03

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 40.52  E-value: 4.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478   17 SSALGIGAAAEITVQPGQSIQDVLNSSVSGDEIIISPGNYADNLRITTGDITVRSASGNPEDTIVTAASPAEDVFYVEAS 96
Cdd:COG3210   190 NPTGVTGVGGALINATAGVLANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSLSVAAGAGTGGAGGTGNAG 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478   97 NVTITGLGINGAGYDRAGVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTAVEGKRAVNVERSNYNTISGNNVSD 176
Cdd:COG3210   270 NTTIGTTVTGTNATGSNTAGASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNGDGNNTTANSGAGLVSGGTG 349

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  177 QRFGIYFLISEANIASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGNTADSNLVYGIYLRDSN 256
Cdd:COG3210   350 GNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVLGSGSLATGNTGTTIAGNGGSANAGGFTTT 429

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  257 GNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLLNSTYCNISENVLSGNT 336
Cdd:COG3210   430 GGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGGGIGTVTTNATISNNAGGDANG 509

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  337 LGIDLAFSSNSTIVNNNIQEGGRGLNLQDSNYNILVNNTALKNRYGAYLLRSGWNVFSNNIASESDDHGIVLENSSNSNE 416
Cdd:COG3210   510 IATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGVLAATGGTSNATTAGNSTSAT 589

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499342478  417 LSGNTADSNRAYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNALLNNTVLNNGEYAILLAYSSGNDILENEASSSNRG 496
Cdd:COG3210   590 GGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGG 669

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499342478  497 IHLSTSDDNTLSGNNIVSNGVSGLHMTSTSNNNTFFNNYLNNNVNADVKQGSVGNVWNTTKTKGTSITG 565
Cdd:COG3210   670 TGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQIGALANANGDTVTFGNLGTG 738
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 338-381 6.55e-03

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 34.79  E-value: 6.55e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 499342478  338 GIDLAFSSNSTIVNNNIQEGGRGLNLQDSNYNILVNNTALKNRY 381
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNNSYGIYLYDSSNNTLSNNTASNNGY 44
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 316-359 6.61e-03

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 34.79  E-value: 6.61e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 499342478  316 GISLLNSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGR 359
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNNSYGIYLYDSSNNTLSNNTASNNGY 44
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 360-403 7.67e-03

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 34.79  E-value: 7.67e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 499342478  360 GLNLQDSNYNILVNNTALKNRYGAYLLRSGWNVFSNNIASESDD 403
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNNSYGIYLYDSSNNTLSNNTASNNGY 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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