|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
2-281 |
1.22e-119 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 345.16 E-value: 1.22e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 2 GILEKIKNLF-KSKQQENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTIIGKLKELLSSYI------NTKKFTL 74
Cdd:PRK10416 30 NFGEGINGLFaKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELaeilepVEKPLNI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 75 ENNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSI 154
Cdd:PRK10416 110 EEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 155 SSAKLKNYDALIIDTAGRLQNKENLIKELQKINNVILKqiKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIIT 234
Cdd:PRK10416 190 QAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK--ADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILT 267
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 499192138 235 KLDSSSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:PRK10416 268 KLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALL 314
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
14-281 |
5.21e-110 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 319.20 E-value: 5.21e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 14 KQQENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTIIGKLKELLSSYINTK-----------KFTLENNKLNIL 82
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEIlkedllkntdlELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 83 LIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNY 162
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 163 DALIIDTAGRLQNKENLIKELQKINNVILKQIKntDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSSSKA 242
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDK--DAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKG 238
|
250 260 270
....*....|....*....|....*....|....*....
gi 499192138 243 GTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:TIGR00064 239 GIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
2-281 |
1.07e-104 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 306.56 E-value: 1.07e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 2 GILEKIKNLFKSKQQ--ENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTIIGKLKELLSSYI------NTKKFT 73
Cdd:COG0552 15 GLGEKLKSLFSGKKKidEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEELleildpVDKPLA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 74 LENNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDS 153
Cdd:COG0552 95 IEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQKEGADPAAVAFDA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 154 ISSAKLKNYDALIIDTAGRLQNKENLIKELQKINNVILKQIKntDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIII 233
Cdd:COG0552 175 IQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDP--DAPHEVLLVLDATTGQNALSQAKVFNEAVGVTGIVL 252
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 499192138 234 TKLDSSSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:COG0552 253 TKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALF 300
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
80-280 |
1.01e-100 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 292.55 E-value: 1.01e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKL 159
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 160 KNYDALIIDTAGRLQNKENLIKELQKINNVILKqiKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSS 239
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKK--KDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGT 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499192138 240 SKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKL 280
Cdd:cd17874 159 AKGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
80-280 |
2.88e-89 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 263.25 E-value: 2.88e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKL 159
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 160 KNYDALIIDTAGRLQNKENLIKELQKINNVIlkqikntdINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSS 239
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV--------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGD 152
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499192138 240 SKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKL 280
Cdd:pfam00448 153 AKGGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
80-281 |
8.68e-81 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 241.93 E-value: 8.68e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLIVGINGIGKTSSIAKLANKLK-NEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAK 158
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKlKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 159 LKNYDALIIDTAGRLQNKENLIKELQKINNVIlkQIKNTdinyqkILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDS 238
Cdd:smart00962 82 ARGYDVVLIDTAGRLHNDENLMEELKKIKRVI--KPDEV------LLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDG 153
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 499192138 239 SSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:smart00962 154 TAKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
2-281 |
1.22e-119 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 345.16 E-value: 1.22e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 2 GILEKIKNLF-KSKQQENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTIIGKLKELLSSYI------NTKKFTL 74
Cdd:PRK10416 30 NFGEGINGLFaKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELaeilepVEKPLNI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 75 ENNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSI 154
Cdd:PRK10416 110 EEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 155 SSAKLKNYDALIIDTAGRLQNKENLIKELQKINNVILKqiKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIIT 234
Cdd:PRK10416 190 QAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK--ADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILT 267
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 499192138 235 KLDSSSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:PRK10416 268 KLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALL 314
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
14-281 |
5.21e-110 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 319.20 E-value: 5.21e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 14 KQQENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTIIGKLKELLSSYINTK-----------KFTLENNKLNIL 82
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEIlkedllkntdlELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 83 LIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNY 162
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 163 DALIIDTAGRLQNKENLIKELQKINNVILKQIKntDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSSSKA 242
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDK--DAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKG 238
|
250 260 270
....*....|....*....|....*....|....*....
gi 499192138 243 GTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:TIGR00064 239 GIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
2-281 |
1.07e-104 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 306.56 E-value: 1.07e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 2 GILEKIKNLFKSKQQ--ENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTIIGKLKELLSSYI------NTKKFT 73
Cdd:COG0552 15 GLGEKLKSLFSGKKKidEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEELleildpVDKPLA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 74 LENNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDS 153
Cdd:COG0552 95 IEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQKEGADPAAVAFDA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 154 ISSAKLKNYDALIIDTAGRLQNKENLIKELQKINNVILKQIKntDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIII 233
Cdd:COG0552 175 IQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDP--DAPHEVLLVLDATTGQNALSQAKVFNEAVGVTGIVL 252
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 499192138 234 TKLDSSSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:COG0552 253 TKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALF 300
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
80-280 |
1.01e-100 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 292.55 E-value: 1.01e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKL 159
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 160 KNYDALIIDTAGRLQNKENLIKELQKINNVILKqiKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSS 239
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKK--KDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGT 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499192138 240 SKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKL 280
Cdd:cd17874 159 AKGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
80-280 |
2.88e-89 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 263.25 E-value: 2.88e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKL 159
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 160 KNYDALIIDTAGRLQNKENLIKELQKINNVIlkqikntdINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSS 239
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV--------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGD 152
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499192138 240 SKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKL 280
Cdd:pfam00448 153 AKGGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
80-281 |
8.68e-81 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 241.93 E-value: 8.68e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLIVGINGIGKTSSIAKLANKLK-NEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAK 158
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKlKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 159 LKNYDALIIDTAGRLQNKENLIKELQKINNVIlkQIKNTdinyqkILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDS 238
Cdd:smart00962 82 ARGYDVVLIDTAGRLHNDENLMEELKKIKRVI--KPDEV------LLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDG 153
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 499192138 239 SSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:smart00962 154 TAKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
1-281 |
1.12e-69 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 218.69 E-value: 1.12e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 1 MGILEKIKNL-FKSKQQENVIENLEDILLESDINNEIVIEIINKLTKE--------KNENEKTIIGKLKELLSSYINTKK 71
Cdd:PRK14974 47 PGFFDKAKITeIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKlvgkkvkrGEDVEEIVKNALKEALLEVLSVGD 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 72 FT------LENNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSD 145
Cdd:PRK14974 127 LFdlieeiKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGAD 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 146 PSAVIFDSISSAKLKNYDALIIDTAGRLQNKENLIKELQKINNVIlkqikNTDInyqKILVIDSTIGKNANSQAEIFNKA 225
Cdd:PRK14974 207 PAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVT-----KPDL---VIFVGDALAGNDAVEQAREFNEA 278
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 499192138 226 IEIDGIIITKLDSSSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:PRK14974 279 VGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLL 334
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
80-272 |
4.64e-62 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 194.13 E-value: 4.64e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKL 159
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 160 KNYDALIIDTAGRLQNKENLIKELQKINNVIlkqikNTDinyQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSS 239
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVE-----SPD---EVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGT 152
|
170 180 190
....*....|....*....|....*....|...
gi 499192138 240 SKAGTILNISKILEKPIYFTTFGEKLEDIKEFD 272
Cdd:cd03115 153 AKGGAALSIVAETKKPIKFIGVGEKPEDLEPFD 185
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
59-272 |
1.59e-57 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 189.85 E-value: 1.59e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 59 LKELLSSyiNTKKFTLENNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRII 138
Cdd:COG0541 82 LVELLGG--ENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 139 SQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKENLIKELQKINNVilkqIKNTDInyqkILVIDSTIGKNANSQ 218
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAA----VNPDET----LLVVDAMTGQDAVNV 231
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499192138 219 AEIFNKAIEIDGIIITKLDSSSKAGTILNISKILEKPIYFTTFGEKLEDIKEFD 272
Cdd:COG0541 232 AKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFH 285
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
80-272 |
3.73e-56 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 178.95 E-value: 3.73e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKL 159
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 160 KNYDALIIDTAGRLQNKENLIKELQKInnvilKQIKNTDinyQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSS 239
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEI-----KEVLNPD---EVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGD 152
|
170 180 190
....*....|....*....|....*....|...
gi 499192138 240 SKAGTILNISKILEKPIYFTTFGEKLEDIKEFD 272
Cdd:cd18539 153 ARGGAALSIRHVTGKPIKFIGVGEKIEDLEPFH 185
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
78-281 |
4.38e-48 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 165.38 E-value: 4.38e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 78 KLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSIssA 157
Cdd:PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL--E 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 158 KLKNYDALIIDTAGRLQNKENLIKELQKINNVIlkqikNTDinyQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237
Cdd:PRK00771 172 KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAV-----KPD---EVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLD 243
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 499192138 238 SSSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:PRK00771 244 GTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLL 287
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
80-280 |
3.11e-47 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 156.20 E-value: 3.11e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKL 159
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 160 KNYDALIIDTAGRLQNKENLIKELQKINNVIlkqikNTDinyQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSS 239
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAV-----KPD---EVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGH 152
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499192138 240 SKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKL 280
Cdd:cd17875 153 AKGGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
84-280 |
1.67e-41 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 141.98 E-value: 1.67e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 84 IVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYD 163
Cdd:cd17876 5 FCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQGFD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 164 ALIIDTAGRLQNKENLIKELQKinnviLKQIKNTDinyqKIL-VIDSTIGKNANSQAEIFNKAI----------EIDGII 232
Cdd:cd17876 85 VVLIDTAGRMQNNEPLMRALAK-----LIKENNPD----LVLfVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIV 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 499192138 233 ITKLDS-SSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKL 280
Cdd:cd17876 156 LTKFDTiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
20-281 |
4.00e-35 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 130.73 E-value: 4.00e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 20 IENLEDILLESDINNEIVIEIINKLTKEKN-ENEKTIIGKLKELLSSYI---------NTKKFTLENNKLNILLIVGING 89
Cdd:TIGR01425 31 LKEICTALLESDVNPKLVRQMRNNIKKKINlEDIASGINKRKLIQDAVFeelcnlvdpGVEAFTPKKGKTCVIMFVGLQG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 90 IGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDT 169
Cdd:TIGR01425 111 AGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDT 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 170 AGRLQNKENLIKELQKINNVilkqIKNTDInyqkILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLDSSSKAGTILNIS 249
Cdd:TIGR01425 191 SGRHKQEKELFEEMQQVREA----IKPDSI----IFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAV 262
|
250 260 270
....*....|....*....|....*....|..
gi 499192138 250 KILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281
Cdd:TIGR01425 263 AATKSPIIFIGTGEHVDEFEIFDAEPFVSKLL 294
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
47-281 |
8.49e-34 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 125.75 E-value: 8.49e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 47 EKNENEKTIIGKLKELLSSYINTKKFTLENNKLNILLiVGINGIGKTSSIAKLANKLK-NEGKNI-LISAaDTFRAAAIE 124
Cdd:COG1419 133 PEDLSAEEAWRALLEALARRLPVAEDPLLDEGGVIAL-VGPTGVGKTTTIAKLAARFVlRGKKKVaLITT-DTYRIGAVE 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 125 QMKIYGEQIGVRI-ISQNQGSDPSAVifdsissAKLKNYDALIIDTAGRLQNKENLIKELqkinnvilKQIKNTDINYQK 203
Cdd:COG1419 211 QLKTYARILGVPVeVAYDPEELKEAL-------ERLRDKDLVLIDTAGRSPRDPELIEEL--------KALLDAGPPIEV 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 204 ILVIdstigkNANSQA----EIFN--KAIEIDGIIITKLDSSSKAGTILNISKILEKPIYFTTFGEKL-EDIKEFDINEY 276
Cdd:COG1419 276 YLVL------SATTKYedlkEIVEafSSLGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERL 349
|
....*
gi 499192138 277 FNKLL 281
Cdd:COG1419 350 ARLLL 354
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
81-281 |
1.70e-28 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 107.64 E-value: 1.70e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 81 ILLIVGINGIGKTSSIAKLANKLK-NEGKNILISAADTFRAAAIEQMKIYGEQIGVriisqnqgsdPSAVIFDSISSAK- 158
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEDPEDLADa 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 159 ---LKNYDALIIDTAGRLQNKENLIKELQKINNVilkqikntDINYQKILVIdstigkNANSQAEIFNKAIE------ID 229
Cdd:cd17873 72 lerLSDRDLILIDTAGRSPRDKEQLEELKELLGA--------GEDIEVHLVL------SATTKAKDLKEIIErfsplgYR 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 499192138 230 GIIITKLDSSSKAGTILNISKILEKPIYFTTFGEKL-EDIKEFDiNEYFNKLL 281
Cdd:cd17873 138 GLILTKLDETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVAS-PLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
5-270 |
5.03e-25 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 103.05 E-value: 5.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 5 EKIKNLFKSKQQENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTIIGKLKELLSSYINTKKFTLENNKlNILLI 84
Cdd:PRK05703 148 DQLSGLRQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDILKQG-GVVAL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 85 VGINGIGKTSSIAKLANK--LKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIfdsissAKLKNY 162
Cdd:PRK05703 227 VGPTGVGKTTTLAKLAARyaLLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKAL------EQLRDC 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 163 DALIIDTAGRLQNKENLIKELQKInnvilkqIKNTDINYQKILVIdstigkNANSQ----AEIFN--KAIEIDGIIITKL 236
Cdd:PRK05703 301 DVILIDTAGRSQRDKRLIEELKAL-------IEFSGEPIDVYLVL------SATTKyedlKDIYKhfSRLPLDGLIFTKL 367
|
250 260 270
....*....|....*....|....*....|....*
gi 499192138 237 DSSSKAGTILNISKILEKPI-YFTTFGEKLEDIKE 270
Cdd:PRK05703 368 DETSSLGSILSLLIESGLPIsYLTNGQRVPDDIKV 402
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
2-171 |
5.06e-15 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 73.14 E-value: 5.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 2 GILEKIKNLFKSKQQENVIENLEDILLESDINNEIVIEIINKLTKEknENEKTIIGKLKELLSSYINTKKF--TLENNKL 79
Cdd:TIGR03499 118 ELLERLLAGLAWLQRPPERAKLYERLLEAGVSEELARELLEKLPED--ADAEDAWRWLREALEGMLPVKPEedPILEQGG 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 80 NILLiVGINGIGKTSSIAKLANK--LKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIfdsissA 157
Cdd:TIGR03499 196 VIAL-VGPTGVGKTTTLAKLAARfaLEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKELREAL------D 268
|
170
....*....|....
gi 499192138 158 KLKNYDALIIDTAG 171
Cdd:TIGR03499 269 RLRDKDLILIDTAG 282
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
81-264 |
1.05e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 74.07 E-value: 1.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 81 ILLIVGINGIGKTSSIAKLANK-LKNEGKNIL-ISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIfdsissAK 158
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARcVAREGADQLaLLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL------AA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 159 LKNYDALIIDTAGRLQNKENLIKELQKINNViLKQIkntdinyQKILVIdstigkNANSQAEIFNKAI---------EID 229
Cdd:PRK14723 261 LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGV-GRPV-------RRLLLL------NAASHGDTLNEVVhayrhgageDVD 326
|
170 180 190
....*....|....*....|....*....|....*
gi 499192138 230 GIIITKLDSSSKAGTILNISKILEKPIYFTTFGEK 264
Cdd:PRK14723 327 GCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQK 361
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
81-267 |
2.69e-13 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 69.63 E-value: 2.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 81 ILLIVGINGIGKTSSIAKLANKL--KNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIfdsissAK 158
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLL------ER 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 159 LKNYDALIIDTAGRLQNKENLIKELQKINNVilKQIKNtdinyqkILVIDStigkNAN--SQAEIFNK--AIEIDGIIIT 234
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA--RQVTS-------LLVLPA----NAHfsDLDEVVRRfaHAKPQGVVLT 492
|
170 180 190
....*....|....*....|....*....|...
gi 499192138 235 KLDSSSKAGTILNISKILEKPIYFTTFGEKLED 267
Cdd:PRK12727 493 KLDETGRFGSALSVVVDHQMPITWVTDGQRVPD 525
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
81-267 |
5.48e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 68.21 E-value: 5.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 81 ILLIVGINGIGKTSSIAKLANK--LKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSavifdsISSAK 158
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 159 LKNYDALIIDTAGRLQNKENLIKELQKINNvilkqiknTDINYQKILVIDSTI-GKNANSQAEIFNKAI--------EID 229
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHG--------ADTPVQRLLLLNATShGDTLNEVVQAYRSAAgqpkaalpDLA 284
|
170 180 190
....*....|....*....|....*....|....*...
gi 499192138 230 GIIITKLDSSSKAGTILNISKILEKPIYFTTFGEKLED 267
Cdd:PRK14722 285 GCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
5-270 |
1.15e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 67.40 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 5 EKIKNLFKSKQQENV---IENLEDILLESDINNEIVIEIINKLtKEKNEN-----EKTIIGKLKELLSSYINTKKfTLEN 76
Cdd:PRK11889 162 KKEEVVVKKEKQESVpfiIQKVIRMLEQNDVEQYFIHAYAEKL-KVKFENatmitEEEVIEYILEDMRSHFNTEN-VFEK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 77 NKLNILLIvGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNqgsDPSAVIFDSISS 156
Cdd:PRK11889 240 EVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYF 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 157 AKLKNYDALIIDTAGRLQNKENLIKELqkinnviLKQIKNTDINYqkILVIDSTIGKNANSQAEIFN-KAIEIDGIIITK 235
Cdd:PRK11889 316 KEEARVDYILIDTAGKNYRASETVEEM-------IETMGQVEPDY--ICLTLSASMKSKDMIEIITNfKDIHIDGIVFTK 386
|
250 260 270
....*....|....*....|....*....|....*
gi 499192138 236 LDSSSKAGTILNISKILEKPIYFTTFGeklEDIKE 270
Cdd:PRK11889 387 FDETASSGELLKIPAVSSAPIVLMTDG---QDVKK 418
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
81-267 |
1.23e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 64.37 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 81 ILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISqnqGSDPSAVIFDSISSAKLK 160
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATSPAELEEAVQYMTYVN 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 161 NYDALIIDTAGRLQNKENLIKELQKInnvilkqiknTDINYQKILVIDSTIGKNANSQAEIFNKAIE--IDGIIITKLDS 238
Cdd:PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAY----------TDVVHPDLTCFTFSSGMKSADVMTILPKLAEipIDGFIITKMDE 354
|
170 180
....*....|....*....|....*....
gi 499192138 239 SSKAGTILNISKILEKPIYFTTFGEKLED 267
Cdd:PRK12726 355 TTRIGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
12-266 |
6.07e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 61.30 E-value: 6.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 12 KSKQQENV---IENLEDILLESDINNEIVIEIINKLtKEKNENEKTI----IGKLKELLSSYINTKkfTLENNKLNILLI 84
Cdd:PRK06731 4 KKEKQESVpfiIQKVIRMLEQNDVEQYFIHAYAEKL-KVKFENATMIteevIEYILEDMSSHFNTE--NVFEKEVQTIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 85 VGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNqgsDPSAVIFDSISSAKLKNYDA 164
Cdd:PRK06731 81 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVDY 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 165 LIIDTAGRLQNKENLIKELqkinnviLKQIKNTDINYQKILVIDSTIGKNANSQAEIFnKAIEIDGIIITKLDSSSKAGT 244
Cdd:PRK06731 158 ILIDTAGKNYRASETVEEM-------IETMGQVEPDYICLTLSASMKSKDMIEIITNF-KDIHIDGIVFTKFDETASSGE 229
|
250 260
....*....|....*....|..
gi 499192138 245 ILNISKILEKPIYFTTFGEKLE 266
Cdd:PRK06731 230 LLKIPAVSSAPIVLMTDGQDVK 251
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
77-273 |
6.19e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 62.29 E-value: 6.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 77 NKLNILLIVGINGIGKTSSIAKLANKLK-NEGKNILISAADTFRAAAIEQMKIYGEQIG--------VRIISQNQGSDPS 147
Cdd:PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFlHMGKSVSLYTTDNYRIAAIEQLKRYADTMGmpfypvkdIKKFKETLARDGS 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 148 AVIfdsissaklknydalIIDTAGRLQNKENLIKELQKINNVILKQikntdINYQKILVIDSTIGKNANSQAEIFNKAIE 227
Cdd:PRK12724 301 ELI---------------LIDTAGYSHRNLEQLERMQSFYSCFGEK-----DSVENLLVLSSTSSYHHTLTVLKAYESLN 360
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 499192138 228 IDGIIITKLDSSSKAGTILNISKILEKPIYFTTFGEKLedikEFDI 273
Cdd:PRK12724 361 YRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV----PFDI 402
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
84-270 |
6.88e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 59.19 E-value: 6.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 84 IVGINGIGKTSSIAKLANK--LKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPsavifdSISSAKLKN 161
Cdd:PRK14721 196 LIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL------QLMLHELRG 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 162 YDALIIDTAGRLQnKENLIKELQKINNVILKQIKntdinyqKILVIdstigkNANSQAEIFNKAIE------IDGIIITK 235
Cdd:PRK14721 270 KHMVLIDTVGMSQ-RDQMLAEQIAMLSQCGTQVK-------HLLLL------NATSSGDTLDEVISayqghgIHGCIITK 335
|
170 180 190
....*....|....*....|....*....|....*.
gi 499192138 236 LDSSSKAGTILNISKILEKPIYFTTFGEKL-EDIKE 270
Cdd:PRK14721 336 VDEAASLGIALDAVIRRKLVLHYVTNGQKVpEDLHE 371
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
85-268 |
1.85e-08 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 54.97 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 85 VGINGIGKTSSIAKLANKL---KNEGKNILISaADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPsavifdSISSAKLKN 161
Cdd:PRK06995 262 MGPTGVGKTTTTAKLAARCvmrHGASKVALLT-TDSYRIGGHEQLRIYGKILGVPVHAVKDAADL------RLALSELRN 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 162 YDALIIDTAGRLQnKENLIKElqkinnvilkQIK-----NTDInyQKILVIdstigkNANSQAEIFNKAIE------IDG 230
Cdd:PRK06995 335 KHIVLIDTIGMSQ-RDRMVSE----------QIAmlhgaGAPV--KRLLLL------NATSHGDTLNEVVQayrgpgLAG 395
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 499192138 231 IIITKLDSSSKAGTILNISkILEK-PIYFTTFGEKL-EDI 268
Cdd:PRK06995 396 CILTKLDEAASLGGALDVV-IRYKlPLHYVSNGQRVpEDL 434
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
20-263 |
6.62e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 52.98 E-value: 6.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 20 IENLEDILLESDINNEIVIEIINKLTKEKNENEKTIIGKLKELLSSYI-NTKKFT---LENNKLNILLIVGINGIGKTSS 95
Cdd:PRK12723 111 ILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIaKTIKCSgsiIDNLKKRVFILVGPTGVGKTTT 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 96 IAKLAN----KLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSissaklKNYDALIIDTAG 171
Cdd:PRK12723 191 IAKLAAiygiNSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS------KDFDLVLVDTIG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 172 RLQNKENLIKELQKINNVIlkqikNTDINYQkiLVIDSTigKNANSQAEIFNK--AIEIDGIIITKLDSSSKAGTILNIS 249
Cdd:PRK12723 265 KSPKDFMKLAEMKELLNAC-----GRDAEFH--LAVSST--TKTSDVKEIFHQfsPFSYKTVIFTKLDETTCVGNLISLI 335
|
250
....*....|....
gi 499192138 250 KILEKPIYFTTFGE 263
Cdd:PRK12723 336 YEMRKEVSYVTDGQ 349
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
78-195 |
1.11e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.06 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 78 KLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYGEQIGVRIISQNQgsdpsaVIFDSISSA 157
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGEL------RLRLALALA 74
|
90 100 110
....*....|....*....|....*....|....*...
gi 499192138 158 KLKNYDALIIDTAGRLQNKENLIKELQKINNVILKQIK 195
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLK 112
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
67-154 |
5.51e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 39.44 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499192138 67 INTKKFTLENNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIyGEQIGVRIISQNQGSDP 146
Cdd:cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF-GHFLVRLLFELAEKAKP 85
|
....*...
gi 499192138 147 SAVIFDSI 154
Cdd:cd00009 86 GVLFIDEI 93
|
|
| |
