NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499176808|ref|WP_010874395|]
View 

DUF16 domain-containing protein [Mycoplasmoides pneumoniae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF16 super family cl03245
Protein of unknown function DUF16; The function of this protein is unknown. It appears to only ...
 40-115 2.66e-12

Protein of unknown function DUF16; The function of this protein is unknown. It appears to only occur in Mycoplasma pneumoniae. The crystal structure revealed that this domain is composed of two separated homotrimeric coiled-coils.


The actual alignment was detected with superfamily member pfam01519:

Pssm-ID: 396208 [Multi-domain]  Cd Length: 95  Bit Score: 57.92  E-value: 2.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499176808   40 GKSGYVTHKQLDKKLEVFKQDL------LVELSEKF-VTKEEFRAQGKQIKELQIEQKAQG-------KTLQLILEALQG 105
Cdd:pfam01519   6 VNTEYVTHKQFNEFKDSNDQRLtkietkVDKLGEQInKLEQKVDKQGEQIKELQVEQKAQGeqinavgETLQLILETLQK 85

                          90
                  ....*....|
gi 499176808  106 INKRLDKLES 115
Cdd:pfam01519  86 INKRLDSIEG 95
 
Name Accession Description Interval E-value
DUF16 pfam01519
Protein of unknown function DUF16; The function of this protein is unknown. It appears to only ...
 40-115 2.66e-12

Protein of unknown function DUF16; The function of this protein is unknown. It appears to only occur in Mycoplasma pneumoniae. The crystal structure revealed that this domain is composed of two separated homotrimeric coiled-coils.


Pssm-ID: 396208 [Multi-domain]  Cd Length: 95  Bit Score: 57.92  E-value: 2.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499176808   40 GKSGYVTHKQLDKKLEVFKQDL------LVELSEKF-VTKEEFRAQGKQIKELQIEQKAQG-------KTLQLILEALQG 105
Cdd:pfam01519   6 VNTEYVTHKQFNEFKDSNDQRLtkietkVDKLGEQInKLEQKVDKQGEQIKELQVEQKAQGeqinavgETLQLILETLQK 85

                          90
                  ....*....|
gi 499176808  106 INKRLDKLES 115
Cdd:pfam01519  86 INKRLDSIEG 95
 
Name Accession Description Interval E-value
DUF16 pfam01519
Protein of unknown function DUF16; The function of this protein is unknown. It appears to only ...
 40-115 2.66e-12

Protein of unknown function DUF16; The function of this protein is unknown. It appears to only occur in Mycoplasma pneumoniae. The crystal structure revealed that this domain is composed of two separated homotrimeric coiled-coils.


Pssm-ID: 396208 [Multi-domain]  Cd Length: 95  Bit Score: 57.92  E-value: 2.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499176808   40 GKSGYVTHKQLDKKLEVFKQDL------LVELSEKF-VTKEEFRAQGKQIKELQIEQKAQG-------KTLQLILEALQG 105
Cdd:pfam01519   6 VNTEYVTHKQFNEFKDSNDQRLtkietkVDKLGEQInKLEQKVDKQGEQIKELQVEQKAQGeqinavgETLQLILETLQK 85

                          90
                  ....*....|
gi 499176808  106 INKRLDKLES 115
Cdd:pfam01519  86 INKRLDSIEG 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH