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Conserved domains on  [gi|499174046|ref|WP_010871633|]
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MULTISPECIES: photosystem I reaction center subunit XII [Synechocystis]

Protein Classification

photosystem I reaction center subunit XII( domain architecture ID 10013892)

photosystem I reaction center subunit XII (PsaM) forms part of the photosystem I complex and its binding is stabilised by PsaI

Gene Ontology:  GO:0015979|GO:0009522
PubMed:  11687207|3333014

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PsaM COG5711
Photosystem I reaction center subunit XII, PsaM [Energy production and conversion]; ...
 3-31 1.68e-05

Photosystem I reaction center subunit XII, PsaM [Energy production and conversion]; Photosystem I reaction center subunit XII, PsaM is part of the Pathway/BioSystem: Photosystem I


:

Pssm-ID: 444421  Cd Length: 29  Bit Score: 35.59  E-value: 1.68e-05
                        10        20
                ....*....|....*....|....*....
gi 499174046  3 LSDTQILAALVVALLPAFLAFRLSTELYK 31
Cdd:COG5711   1 ISDAQVLIALVVALHPGILALRLGTELYK 29
 
Name Accession Description Interval E-value
PsaM COG5711
Photosystem I reaction center subunit XII, PsaM [Energy production and conversion]; ...
 3-31 1.68e-05

Photosystem I reaction center subunit XII, PsaM [Energy production and conversion]; Photosystem I reaction center subunit XII, PsaM is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444421  Cd Length: 29  Bit Score: 35.59  E-value: 1.68e-05
                        10        20
                ....*....|....*....|....*....
gi 499174046  3 LSDTQILAALVVALLPAFLAFRLSTELYK 31
Cdd:COG5711   1 ISDAQVLIALVVALHPGILALRLGTELYK 29
psaM PRK11878
photosystem I reaction center subunit XII; Reviewed
 1-31 9.48e-05

photosystem I reaction center subunit XII; Reviewed


Pssm-ID: 183356  Cd Length: 34  Bit Score: 33.88  E-value: 9.48e-05
                        10        20        30
                ....*....|....*....|....*....|.
gi 499174046  1 MALSDTQILAALVVALLPAFLAFRLSTELYK 31
Cdd:PRK11878  3 PSLTDTQVFVALVVALHAGVLALRLGTSLYR 33
PS_I_psaM TIGR03053
photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is ...
 3-31 9.80e-05

photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from pfam07465 and additional sequences, as from Prochlorococcus. [Energy metabolism, Photosynthesis]


Pssm-ID: 274411  Cd Length: 29  Bit Score: 33.57  E-value: 9.80e-05
                         10        20
                 ....*....|....*....|....*....
gi 499174046   3 LSDTQILAALVVALLPAFLAFRLSTELYK 31
Cdd:TIGR03053  1 ISDSQIFIALVIALIAGILALRLGKELYR 29
PsaM pfam07465
Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial ...
 3-30 7.83e-04

Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial photosystem I protein M (PsaM) sequences. PsaM forms part of the photosystem I complex and its binding is stabilized by PsaI.


Pssm-ID: 429475  Cd Length: 28  Bit Score: 31.33  E-value: 7.83e-04
                         10        20
                 ....*....|....*....|....*...
gi 499174046   3 LSDTQILAALVVALLPAFLAFRLSTELY 30
Cdd:pfam07465  1 LSDTQVFIALVVALLPGILALRLGTALY 28
 
Name Accession Description Interval E-value
PsaM COG5711
Photosystem I reaction center subunit XII, PsaM [Energy production and conversion]; ...
 3-31 1.68e-05

Photosystem I reaction center subunit XII, PsaM [Energy production and conversion]; Photosystem I reaction center subunit XII, PsaM is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444421  Cd Length: 29  Bit Score: 35.59  E-value: 1.68e-05
                        10        20
                ....*....|....*....|....*....
gi 499174046  3 LSDTQILAALVVALLPAFLAFRLSTELYK 31
Cdd:COG5711   1 ISDAQVLIALVVALHPGILALRLGTELYK 29
psaM PRK11878
photosystem I reaction center subunit XII; Reviewed
 1-31 9.48e-05

photosystem I reaction center subunit XII; Reviewed


Pssm-ID: 183356  Cd Length: 34  Bit Score: 33.88  E-value: 9.48e-05
                        10        20        30
                ....*....|....*....|....*....|.
gi 499174046  1 MALSDTQILAALVVALLPAFLAFRLSTELYK 31
Cdd:PRK11878  3 PSLTDTQVFVALVVALHAGVLALRLGTSLYR 33
PS_I_psaM TIGR03053
photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is ...
 3-31 9.80e-05

photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from pfam07465 and additional sequences, as from Prochlorococcus. [Energy metabolism, Photosynthesis]


Pssm-ID: 274411  Cd Length: 29  Bit Score: 33.57  E-value: 9.80e-05
                         10        20
                 ....*....|....*....|....*....
gi 499174046   3 LSDTQILAALVVALLPAFLAFRLSTELYK 31
Cdd:TIGR03053  1 ISDSQIFIALVIALIAGILALRLGKELYR 29
PsaM pfam07465
Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial ...
 3-30 7.83e-04

Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial photosystem I protein M (PsaM) sequences. PsaM forms part of the photosystem I complex and its binding is stabilized by PsaI.


Pssm-ID: 429475  Cd Length: 28  Bit Score: 31.33  E-value: 7.83e-04
                         10        20
                 ....*....|....*....|....*...
gi 499174046   3 LSDTQILAALVVALLPAFLAFRLSTELY 30
Cdd:pfam07465  1 LSDTQVFIALVVALLPGILALRLGTALY 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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