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Conserved domains on  [gi|498071526|ref|WP_010385682|]
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MULTISPECIES: flagellar motor switch protein FliN [Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliN super family cl35754
flagellar motor switch protein FliN;
38-133 6.31e-60

flagellar motor switch protein FliN;


The actual alignment was detected with superfamily member PRK08983:

Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 180.72  E-value: 6.31e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  38 DSGASLSADEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGI 117
Cdd:PRK08983  32 DDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGI 111

                         90
                 ....*....|....*.
gi 498071526 118 RLTDVISQVERIKKLR 133
Cdd:PRK08983 112 RLTDVISQTERIKKLK 127
 
Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
38-133 6.31e-60

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 180.72  E-value: 6.31e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  38 DSGASLSADEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGI 117
Cdd:PRK08983  32 DDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGI 111

                         90
                 ....*....|....*.
gi 498071526 118 RLTDVISQVERIKKLR 133
Cdd:PRK08983 112 RLTDVISQTERIKKLK 127
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 39-124 9.75e-34

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 115.87  E-value: 9.75e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  39 SGASLSADEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIR 118
Cdd:COG1886   87 EDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVR 166


                 ....*.
gi 498071526 119 LTDVIS 124
Cdd:COG1886  167 ITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 50-125 3.81e-31

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 106.14  E-value: 3.81e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 498071526   50 KLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQ 125
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDS 76
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 59-124 3.88e-20

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 77.76  E-value: 3.88e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 498071526   59 VTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 124
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
38-133 6.31e-60

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 180.72  E-value: 6.31e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  38 DSGASLSADEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGI 117
Cdd:PRK08983  32 DDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGI 111

                         90
                 ....*....|....*.
gi 498071526 118 RLTDVISQVERIKKLR 133
Cdd:PRK08983 112 RLTDVISQTERIKKLK 127
fliN PRK05698
flagellar motor switch protein FliN;
51-133 3.67e-52

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 161.89  E-value: 3.67e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  51 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIK 130
Cdd:PRK05698  73 LDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIK 152


                 ...
gi 498071526 131 KLR 133
Cdd:PRK05698 153 KLR 155
PRK08119 PRK08119
flagellar motor switch protein; Validated
 42-133 1.12e-38

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 133.83  E-value: 1.12e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  42 SLSADEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTD 121
Cdd:PRK08119 291 PLATTEPRNLDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITD 370

                         90
                 ....*....|..
gi 498071526 122 VISQVERIKKLR 133
Cdd:PRK08119 371 IVSQSERIKSLK 382
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 39-124 9.75e-34

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 115.87  E-value: 9.75e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  39 SGASLSADEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIR 118
Cdd:COG1886   87 EDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVR 166


                 ....*.
gi 498071526 119 LTDVIS 124
Cdd:COG1886  167 ITEIVS 172
fliN PRK07963
flagellar motor switch protein FliN; Validated
 51-132 6.00e-32

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 109.88  E-value: 6.00e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  51 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIK 130
Cdd:PRK07963  54 IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMR 133


                 ..
gi 498071526 131 KL 132
Cdd:PRK07963 134 RL 135
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 50-125 3.81e-31

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 106.14  E-value: 3.81e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 498071526   50 KLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQ 125
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDS 76
PRK08916 PRK08916
flagellar motor switch protein FliN;
51-123 4.21e-23

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 86.73  E-value: 4.21e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498071526  51 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 123
Cdd:PRK08916  39 LEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGVTMTEII 111
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 59-124 3.88e-20

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 77.76  E-value: 3.88e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 498071526   59 VTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 124
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 37-133 2.77e-18

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 78.13  E-value: 2.77e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  37 QDSGASLSADEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFG 116
Cdd:PRK08432 186 KTHKASLSNEEIKNINMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFG 265

                         90
                 ....*....|....*..
gi 498071526 117 IRLTDVISQVERIKKLR 133
Cdd:PRK08432 266 IQITEIGTKKERLEQLK 282
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 54-123 1.01e-14

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 69.48  E-value: 1.01e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  54 ILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 123
Cdd:PRK06782 459 LQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGFFGVKVTKSL 528
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 56-120 4.75e-14

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 66.67  E-value: 4.75e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 498071526   56 DIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLT 120
Cdd:TIGR02551 232 QLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRIL 296
PRK08433 PRK08433
flagellar motor switch protein FliN;
52-123 8.17e-13

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 60.15  E-value: 8.17e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 498071526  52 DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 123
Cdd:PRK08433  27 ENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKNLAIRINEIL 98
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
54-127 3.07e-12

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 61.72  E-value: 3.07e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 498071526  54 ILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVE 127
Cdd:COG1868  252 LEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAVKITEIIEEEE 325
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
56-120 7.44e-11

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 57.82  E-value: 7.44e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 498071526  56 DIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLT 120
Cdd:PRK06933 236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVE 300
fliM PRK06666
flagellar motor switch protein FliM; Validated
 54-131 2.13e-06

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 45.22  E-value: 2.13e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 498071526  54 ILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 131
Cdd:PRK06666 255 VQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIERELNEKN 332
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
45-119 2.75e-06

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 44.86  E-value: 2.75e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 498071526  45 ADEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRL 119
Cdd:PRK08158 218 TETAETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEI 292
PRK06788 PRK06788
flagellar motor switch protein; Validated
 47-131 1.12e-05

flagellar motor switch protein; Validated


Pssm-ID: 180693 [Multi-domain]  Cd Length: 119  Bit Score: 41.79  E-value: 1.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498071526  47 EKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIrltdVISQV 126
Cdd:PRK06788  24 SKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDEKFGI----IISEI 99


                 ....*
gi 498071526 127 ERIKK 131
Cdd:PRK06788 100 EADKK 104
PRK06033 PRK06033
flagellar motor switch protein FliN;
53-120 1.14e-05

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 40.90  E-value: 1.14e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 498071526  53 TILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLT 120
Cdd:PRK06033   3 TLDAVSVELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVT 70
PRK05933 PRK05933
type III secretion system protein; Validated
 61-122 2.37e-05

type III secretion system protein; Validated


Pssm-ID: 180315 [Multi-domain]  Cd Length: 372  Bit Score: 42.14  E-value: 2.37e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498071526  61 ISMEVGRSKINIRNLLQLNQGSVVELDRV-AGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDV 122
Cdd:PRK05933 310 LVAEVARYSLSVGEFLKLGPGSILQFDGVhPTLGVDIILNGAKVGRGEIIALGDVLGIRVLEV 372
PRK06789 PRK06789
flagellar motor switch protein; Validated
 56-122 3.56e-05

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 39.47  E-value: 3.56e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 498071526  56 DIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDV 122
Cdd:PRK06789   6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
56-120 3.15e-04

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 39.03  E-value: 3.15e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 498071526  56 DIPVTISMEVGRSKINIRNLLQLNQGSVVELD-RVAGEpLDVLVNGTLIAHGEVVVVNDKFGIRLT 120
Cdd:PRK08035 250 QLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGgCFYPE-VTIRLNGRIIGQGELLACDNELMVRIT 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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