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Conserved domains on  [gi|497952523|ref|WP_010266679|]
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MULTISPECIES: 50S ribosomal protein L33 [Alistipes]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 2-60 1.99e-18

50S ribosomal protein L33; Validated


:

Pssm-ID: 179075  Cd Length: 53  Bit Score: 70.23  E-value: 1.99e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 497952523  2 AKKGNRVQVILECTEqresgvAGMSRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:PRK00595  1 AAKGMRVKIKLESTE------GTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 2-60 1.99e-18

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 70.23  E-value: 1.99e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 497952523  2 AKKGNRVQVILECTEqresgvAGMSRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:PRK00595  1 AAKGMRVKIKLESTE------GTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 4-60 2.30e-16

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 64.79  E-value: 2.30e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 497952523  4 KGNRVQVILECTEqresgvAGMSRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:COG0267   2 AGMREKITLACTE------CKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
10-60 1.15e-12

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 55.51  E-value: 1.15e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 497952523  10 VILECTEqresgvAGMSRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:pfam00471  2 ITLACTE------CKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-60 5.78e-09

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 46.29  E-value: 5.78e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 497952523   1 MAKKGNRVQVILECTEQRESgvagmsRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:TIGR01023  1 MAKKGARELIRLVCTACTGI------NYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 2-60 1.99e-18

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 70.23  E-value: 1.99e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 497952523  2 AKKGNRVQVILECTEqresgvAGMSRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:PRK00595  1 AAKGMRVKIKLESTE------GTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
rpl33 CHL00104
ribosomal protein L33
 1-60 4.47e-18

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 69.62  E-value: 4.47e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 497952523  1 MAK-KGNRVQVILECTEQRESGV----AGMSRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:CHL00104  1 MAKgKDVRVTVILECTSCVRNGVnkesTGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 4-60 2.30e-16

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 64.79  E-value: 2.30e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 497952523  4 KGNRVQVILECTEqresgvAGMSRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:COG0267   2 AGMREKITLACTE------CKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
10-60 1.15e-12

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 55.51  E-value: 1.15e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 497952523  10 VILECTEqresgvAGMSRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:pfam00471  2 ITLACTE------CKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG PRK00504
50S ribosomal protein L33; Validated
 5-60 6.27e-12

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 53.77  E-value: 6.27e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 497952523  5 GNRVQVILECTEqresgvAGMSRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:PRK00504  1 MMRKKITLACTE------CKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-60 5.78e-09

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 46.29  E-value: 5.78e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 497952523   1 MAKKGNRVQVILECTEQRESgvagmsRYITTKNKKNTPDRLERKKYNPFLKRVTVHREIK 60
Cdd:TIGR01023  1 MAKKGARELIRLVCTACTGI------NYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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