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Conserved domains on  [gi|497653187|ref|WP_009967371|]
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MULTISPECIES: DUF948 domain-containing protein [Bacillus]

Protein Classification

DUF948 domain-containing protein( domain architecture ID 10532875)

DUF948 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF948 pfam06103
Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences ...
 6-88 3.39e-12

Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences several of which are thought to be general stress proteins.


:

Pssm-ID: 428770 [Multi-domain]  Cd Length: 83  Bit Score: 56.77  E-value: 3.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497653187    6 ISLAVLAVSIIFLGVTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAEVKEV 85
Cdd:pfam06103   1 IAGLIAAIAFVVLVIFLIPTLKKLGKTLDEVRKTIEGLEKQVDPILKETTDLLAKTNELLEDVNGKLEKVDPVFEAVADL 80


                  ...
gi 497653187   86 PQA 88
Cdd:pfam06103  81 GES 83
 
Name Accession Description Interval E-value
DUF948 pfam06103
Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences ...
 6-88 3.39e-12

Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences several of which are thought to be general stress proteins.


Pssm-ID: 428770 [Multi-domain]  Cd Length: 83  Bit Score: 56.77  E-value: 3.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497653187    6 ISLAVLAVSIIFLGVTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAEVKEV 85
Cdd:pfam06103   1 IAGLIAAIAFVVLVIFLIPTLKKLGKTLDEVRKTIEGLEKQVDPILKETTDLLAKTNELLEDVNGKLEKVDPVFEAVADL 80


                  ...
gi 497653187   86 PQA 88
Cdd:pfam06103  81 GES 83
COG4768 COG4768
Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];
2-92 7.35e-07

Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];


Pssm-ID: 443800 [Multi-domain]  Cd Length: 132  Bit Score: 44.07  E-value: 7.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497653187   2 IIVYISLAVLAVSIIFLGVTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAE 81
Cdd:COG4768    1 IILYIAALIIAIAFLVLVIYLVKTLKKVKKTLNEVNKTLEGLEKQLDGITTETTDLLHKTNRLAEDVNGKVEKLDPLFDA 80

                         90
                 ....*....|.
gi 497653187  82 VKEVPQAVKEV 92
Cdd:COG4768   81 VKDVGESVSDL 91
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 20-83 1.86e-04

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 38.65  E-value: 1.86e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 497653187  20 VTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAEVK 83
Cdd:PRK13729  58 VDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121
 
Name Accession Description Interval E-value
DUF948 pfam06103
Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences ...
 6-88 3.39e-12

Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences several of which are thought to be general stress proteins.


Pssm-ID: 428770 [Multi-domain]  Cd Length: 83  Bit Score: 56.77  E-value: 3.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497653187    6 ISLAVLAVSIIFLGVTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAEVKEV 85
Cdd:pfam06103   1 IAGLIAAIAFVVLVIFLIPTLKKLGKTLDEVRKTIEGLEKQVDPILKETTDLLAKTNELLEDVNGKLEKVDPVFEAVADL 80


                  ...
gi 497653187   86 PQA 88
Cdd:pfam06103  81 GES 83
COG4768 COG4768
Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];
2-92 7.35e-07

Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];


Pssm-ID: 443800 [Multi-domain]  Cd Length: 132  Bit Score: 44.07  E-value: 7.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497653187   2 IIVYISLAVLAVSIIFLGVTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAE 81
Cdd:COG4768    1 IILYIAALIIAIAFLVLVIYLVKTLKKVKKTLNEVNKTLEGLEKQLDGITTETTDLLHKTNRLAEDVNGKVEKLDPLFDA 80

                         90
                 ....*....|.
gi 497653187  82 VKEVPQAVKEV 92
Cdd:COG4768   81 VKDVGESVSDL 91
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 20-83 1.86e-04

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 38.65  E-value: 1.86e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 497653187  20 VTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAEVK 83
Cdd:PRK13729  58 VDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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