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Conserved domains on  [gi|496363651|ref|WP_009072641|]
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carbonic anhydrase [Metallosphaera yellowstonensis]

Protein Classification

carbonic anhydrase( domain architecture ID 1865)

carbonic anhydrase (CA) catalyzes the zinc-dependent reversible hydration of carbon dioxide into bicarbonate and a proton

CATH:  3.40.1050.10
EC:  4.2.1.1
Gene Ontology:  GO:0004089|GO:0008270
PubMed:  11696553|9336012
SCOP:  4000510

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
beta_CA super family cl00391
Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of ...
1-63 4.14e-09

Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.


The actual alignment was detected with superfamily member cd03379:

Pssm-ID: 469755  Cd Length: 142  Bit Score: 52.64  E-value: 4.14e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496363651   1 MRIIISCMDRRLN--RYLDQWNdGNTVFVRNAGSNVG-----SLRDTLKLLkGADEIVVLPHTDCGAMGV 63
Cdd:cd03379    4 KLAIVTCMDARLDpeKALGLKL-GDAKVIRNAGGRVTddairSLVVSVYLL-GTREIIVIHHTDCGMLTF 71
 
Name Accession Description Interval E-value
beta_CA_cladeD cd03379
Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of ...
1-63 4.14e-09

Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.


Pssm-ID: 239474  Cd Length: 142  Bit Score: 52.64  E-value: 4.14e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496363651   1 MRIIISCMDRRLN--RYLDQWNdGNTVFVRNAGSNVG-----SLRDTLKLLkGADEIVVLPHTDCGAMGV 63
Cdd:cd03379    4 KLAIVTCMDARLDpeKALGLKL-GDAKVIRNAGGRVTddairSLVVSVYLL-GTREIIVIHHTDCGMLTF 71
Pro_CA smart00947
Carbonic anhydrase; Carbonic anhydrases (CA) are zinc metalloenzymes which catalyze the ...
4-76 7.42e-06

Carbonic anhydrase; Carbonic anhydrases (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's.


Pssm-ID: 214929 [Multi-domain]  Cd Length: 154  Bit Score: 44.03  E-value: 7.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496363651     4 IISCMDRRL--NRYLDQwndGN-TVFV-RNAGSNVG-SLRDTL-------KLLkGADEIVVLPHTDCGAMgvvhKALSGE 71
Cdd:smart00947  10 IIGCSDSRVppELIFGL---GPgDLFViRNAGNIVPpYDDGVLasleyavEVL-GVKEIVVCGHTDCGAV----KAALDD 81

                   ....*
gi 496363651    72 KMPDV 76
Cdd:smart00947  82 EPGLI 86
Pro_CA pfam00484
Carbonic anhydrase; This family includes carbonic anhydrases as well as a family of ...
3-86 4.67e-04

Carbonic anhydrase; This family includes carbonic anhydrases as well as a family of non-functional homologs related to YbcF.


Pssm-ID: 459828  Cd Length: 156  Bit Score: 38.64  E-value: 4.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496363651    3 IIISCMDRRL--NRYLDQwndGN-TVFV-RNAGsNV---------GSLRDTLKLLKgADEIVVLPHTDCGAMgvvhKALS 69
Cdd:pfam00484   2 LIIGCSDSRVppELIFDT---GPgDLFVvRNAG-NLvppydlnvlASIEYAVEVLK-VKHIVVCGHSGCGAV----KAAL 72
                          90
                  ....*....|....*..
gi 496363651   70 GEKMPDVLNPLITPFLN 86
Cdd:pfam00484  73 DAAGPAELPGFIDNWLR 89
 
Name Accession Description Interval E-value
beta_CA_cladeD cd03379
Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of ...
1-63 4.14e-09

Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.


Pssm-ID: 239474  Cd Length: 142  Bit Score: 52.64  E-value: 4.14e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496363651   1 MRIIISCMDRRLN--RYLDQWNdGNTVFVRNAGSNVG-----SLRDTLKLLkGADEIVVLPHTDCGAMGV 63
Cdd:cd03379    4 KLAIVTCMDARLDpeKALGLKL-GDAKVIRNAGGRVTddairSLVVSVYLL-GTREIIVIHHTDCGMLTF 71
beta_CA cd00382
Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of ...
4-64 4.34e-08

Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.


Pssm-ID: 238224 [Multi-domain]  Cd Length: 119  Bit Score: 49.42  E-value: 4.34e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 496363651   4 IISCMDRRL--NRYLDQwNDGNTVFVRNAGSNV--------GSLRDTLKLLkGADEIVVLPHTDCGAMGVV 64
Cdd:cd00382    7 IIGCSDSRVppELIFGL-GPGDLFVVRNAGNLVppydldvlASLEYAVEVL-GVKHIIVCGHTDCGAVKAL 75
Pro_CA smart00947
Carbonic anhydrase; Carbonic anhydrases (CA) are zinc metalloenzymes which catalyze the ...
4-76 7.42e-06

Carbonic anhydrase; Carbonic anhydrases (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's.


Pssm-ID: 214929 [Multi-domain]  Cd Length: 154  Bit Score: 44.03  E-value: 7.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496363651     4 IISCMDRRL--NRYLDQwndGN-TVFV-RNAGSNVG-SLRDTL-------KLLkGADEIVVLPHTDCGAMgvvhKALSGE 71
Cdd:smart00947  10 IIGCSDSRVppELIFGL---GPgDLFViRNAGNIVPpYDDGVLasleyavEVL-GVKEIVVCGHTDCGAV----KAALDD 81

                   ....*
gi 496363651    72 KMPDV 76
Cdd:smart00947  82 EPGLI 86
Pro_CA pfam00484
Carbonic anhydrase; This family includes carbonic anhydrases as well as a family of ...
3-86 4.67e-04

Carbonic anhydrase; This family includes carbonic anhydrases as well as a family of non-functional homologs related to YbcF.


Pssm-ID: 459828  Cd Length: 156  Bit Score: 38.64  E-value: 4.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496363651    3 IIISCMDRRL--NRYLDQwndGN-TVFV-RNAGsNV---------GSLRDTLKLLKgADEIVVLPHTDCGAMgvvhKALS 69
Cdd:pfam00484   2 LIIGCSDSRVppELIFDT---GPgDLFVvRNAG-NLvppydlnvlASIEYAVEVLK-VKHIVVCGHSGCGAV----KAAL 72
                          90
                  ....*....|....*..
gi 496363651   70 GEKMPDVLNPLITPFLN 86
Cdd:pfam00484  73 DAAGPAELPGFIDNWLR 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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