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Conserved domains on  [gi|49425184|gb|AAT65981|]
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Shiga toxin 2 subunit B [Enterobacteria phage VTB75]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SLT_beta super family cl20230
Shiga-like toxin beta subunit; This family represents the B subunit of shiga-like toxin (SLT ...
 2-68 1.92e-19

Shiga-like toxin beta subunit; This family represents the B subunit of shiga-like toxin (SLT or verotoxin) produced by some strains of E.coli associated with hemorrhagic colitis and hemolytic uremic syndrome. SLT's are composed of one enzymatic A subunit and five cell binding B subunits.


The actual alignment was detected with superfamily member pfam02258:

Pssm-ID: 460513  Cd Length: 69  Bit Score: 74.40  E-value: 1.92e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 49425184    2 KKMFMAVLFALVSVNAMAA-DCAKGKIEFSKYNENDTFTVKVAGKEYWTSRWNLQPLLQSAQLTGMTV 68
Cdd:pfam02258  2 PDCVTGKVEYTKYNDDDTFtVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
 
Name Accession Description Interval E-value
SLT_beta pfam02258
Shiga-like toxin beta subunit; This family represents the B subunit of shiga-like toxin (SLT ...
 2-68 1.92e-19

Shiga-like toxin beta subunit; This family represents the B subunit of shiga-like toxin (SLT or verotoxin) produced by some strains of E.coli associated with hemorrhagic colitis and hemolytic uremic syndrome. SLT's are composed of one enzymatic A subunit and five cell binding B subunits.


Pssm-ID: 460513  Cd Length: 69  Bit Score: 74.40  E-value: 1.92e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 49425184    2 KKMFMAVLFALVSVNAMAA-DCAKGKIEFSKYNENDTFTVKVAGKEYWTSRWNLQPLLQSAQLTGMTV 68
Cdd:pfam02258  2 PDCVTGKVEYTKYNDDDTFtVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
 
Name Accession Description Interval E-value
SLT_beta pfam02258
Shiga-like toxin beta subunit; This family represents the B subunit of shiga-like toxin (SLT ...
 2-68 1.92e-19

Shiga-like toxin beta subunit; This family represents the B subunit of shiga-like toxin (SLT or verotoxin) produced by some strains of E.coli associated with hemorrhagic colitis and hemolytic uremic syndrome. SLT's are composed of one enzymatic A subunit and five cell binding B subunits.


Pssm-ID: 460513  Cd Length: 69  Bit Score: 74.40  E-value: 1.92e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 49425184    2 KKMFMAVLFALVSVNAMAA-DCAKGKIEFSKYNENDTFTVKVAGKEYWTSRWNLQPLLQSAQLTGMTV 68
Cdd:pfam02258  2 PDCVTGKVEYTKYNDDDTFtVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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