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Conserved domains on  [gi|494114708|gb|AGL34735|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Sphingonotus cf. azurescens MH-2013]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-350 1.65e-134

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 394.89  E-value: 1.65e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:MTH00165 222 LVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTH 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLY 160
Cdd:MTH00165 302 ALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLF 381

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 161 FISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFV 240
Cdd:MTH00165 382 FFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFV 461

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 241 VILGSYLGYLVSDFDYFYGLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLY 320
Cdd:MTH00165 462 ILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKK 541

                        330       340       350
                 ....*....|....*....|....*....|
gi 494114708 321 MIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00165 542 LSKLIQWLQNNNLKIYLLSFLLWMIILLLL 571
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-350 1.65e-134

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 394.89  E-value: 1.65e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:MTH00165 222 LVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTH 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLY 160
Cdd:MTH00165 302 ALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLF 381

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 161 FISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFV 240
Cdd:MTH00165 382 FFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFV 461

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 241 VILGSYLGYLVSDFDYFYGLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLY 320
Cdd:MTH00165 462 ILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKK 541

                        330       340       350
                 ....*....|....*....|....*....|
gi 494114708 321 MIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00165 542 LSKLIQWLQNNNLKIYLLSFLLWMIILLLL 571
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-251 1.70e-48

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 171.87  E-value: 1.70e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   2 VTAGVYLLIRFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:COG1009  254 VKAGVYLLARLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTH 333

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-IVCLSWVNFLIFFL 159
Cdd:COG1009  334 AFFKALLFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAV 412

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 160 YFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLP 230
Cdd:COG1009  413 ALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHG 492

                        250       260
                 ....*....|....*....|.
gi 494114708 231 WYLKFLTMFVVILGSYLGYLV 251
Cdd:COG1009  493 LLLNALPLLLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-251 2.52e-43

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 157.83  E-value: 2.52e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708    1 LVTAGVYLLIRFSPM-LLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:TIGR01974 255 MVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMT 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   80 HALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFL 159
Cdd:TIGR01974 335 HAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVA 414

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  160 YFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV----------- 228
Cdd:TIGR01974 415 GLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhh 494

                         250       260
                  ....*....|....*....|...
gi 494114708  229 LPWYLKFLTMFVVILGSYLGYLV 251
Cdd:TIGR01974 495 VPALEIWSPTAVAILGILLAYLL 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 170-350 6.90e-42

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 144.23  E-value: 6.90e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  170 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSYLGY 249
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  250 LVSDFDYFYGLFSLSFlSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLY 329
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170       180
                  ....*....|....*....|.
gi 494114708  330 DSNFKVYLLTFIFWMFILFMF 350
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLLLLLL 180
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-350 1.65e-134

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 394.89  E-value: 1.65e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:MTH00165 222 LVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTH 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLY 160
Cdd:MTH00165 302 ALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLF 381

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 161 FISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFV 240
Cdd:MTH00165 382 FFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFV 461

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 241 VILGSYLGYLVSDFDYFYGLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLY 320
Cdd:MTH00165 462 ILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKK 541

                        330       340       350
                 ....*....|....*....|....*....|
gi 494114708 321 MIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00165 542 LSKLIQWLQNNNLKIYLLSFLLWMIILLLL 571
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-350 3.64e-89

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 278.26  E-value: 3.64e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:MTH00151 218 LVTAGVFLLIRFFPFLsSSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYT 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  80 HALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFL 159
Cdd:MTH00151 298 HALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLL 377

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 160 YFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMF 239
Cdd:MTH00151 378 MFVGVGLTALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGF 457

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 240 VVILGSYLGYLVSDFDYFygLFSLSFLSFvnFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFL 319
Cdd:MTH00151 458 VILLGLFLSFGFWDSGFS--SSKMVKLSF--FFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANK 533

                        330       340       350
                 ....*....|....*....|....*....|.
gi 494114708 320 YMIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00151 534 SFSVLNESWPVKWFNFFIGLILLLVLFLVVI 564
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-350 9.93e-88

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 274.60  E-value: 9.93e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:MTH00209 217 LVTAGVYLLIRFFPSLfSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLIT 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  80 HALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFL 159
Cdd:MTH00209 297 HALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLIL 376

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 160 YFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMF 239
Cdd:MTH00209 377 MFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIM 456

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 240 VVILGSYLGYLVSDfdyfYGLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFL 319
Cdd:MTH00209 457 LILFGVLLMYMVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLK 532

                        330       340       350
                 ....*....|....*....|....*....|.
gi 494114708 320 YMIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00209 533 KSSKLSQIIQNNSLKLFVTFMMLILLGVILF 563
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-350 2.06e-85

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 268.94  E-value: 2.06e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:MTH00207 221 LVTAGVFLLIRFYPFLsSTYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLIT 300

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  80 HALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFL 159
Cdd:MTH00207 301 HALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILM 380

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 160 YFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMF 239
Cdd:MTH00207 381 IFLATALTAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLL 460

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 240 VVILGSYLGYLVSDFDYFYGLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLY-SFF 318
Cdd:MTH00207 461 VVTLGALLAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFkMFS 540

                        330       340       350
                 ....*....|....*....|....*....|..
gi 494114708 319 LYMIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00207 541 RSSNNVMKLQKNIPNNYLMMSFVLLTIIIIMT 572
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-350 3.41e-66

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 219.05  E-value: 3.41e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNY-GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:MTH00211 246 MVVAGVFLLIRLSPLFQNNQLiLGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICT 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  80 HALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFL 159
Cdd:MTH00211 326 HAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLL 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 160 YFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-LPWYLKFLTM 238
Cdd:MTH00211 406 TLLATSLTAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPL 485

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 239 FVVILGSYLGYLVSdfdyfYGLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLS-KSFDYGWGELLGGQGLYSF 317
Cdd:MTH00211 486 LVTIVGLLLGLELV-----NLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLStHLMDLGWYEKLGPKGLGVN 560

                        330       340       350
                 ....*....|....*....|....*....|...
gi 494114708 318 FLYMIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00211 561 QKKLIKLVTSPQQGLIKSYLALLLLSLLLILLL 593
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-350 4.07e-63

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 211.75  E-value: 4.07e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLltYNYGWFL---LMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHL 77
Cdd:MTH00208 278 MVVAGVFLLIRTSPLI--SNSPWFLslcLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHI 355

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  78 LTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIF 157
Cdd:MTH00208 356 CTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSI 435

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 158 FLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPyVIVLPWYLKFLT 237
Cdd:MTH00208 436 ILALIATLLTAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLP 514

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 238 MFVVILGSYLGYLvsdFDYFYGLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSF 317
Cdd:MTH00208 515 LIVTIIGAAFSFS---FLLSLSSNPINSNFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTRTLDRGWSENIGPQGIGNT 591

                        330       340       350
                 ....*....|....*....|....*....|...
gi 494114708 318 FLYMIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00208 592 SSTLSKSYQLTQTGYIKQYLLSSTLLFLLILTL 624
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 2-350 5.72e-59

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 200.00  E-value: 5.72e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   2 VTAGVYLLIRFSPMLLTYNYGWFL-LMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:MTH00004 252 VVAGIFLLIRTHPLLQNNQTALTIcLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTH 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLY 160
Cdd:MTH00004 332 AFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLT 411

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 161 FISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV-PYVIVLPWYLKFLTMF 239
Cdd:MTH00004 412 LLATSFTAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALI 491

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 240 VVILGSYLGYLVSDFDYFYGLFSLSFLSfvNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSF-DYGWGELLGGQGLYSFF 318
Cdd:MTH00004 492 VTILGILLALELSNMTTTLTPPKQNTLH--NFSNQLAFFNPLTHRLLPMTLLKSSQKIATHLiDLSWLEKMGPKGLANLQ 569

                        330       340       350
                 ....*....|....*....|....*....|..
gi 494114708 319 LYMIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00004 570 LTASKTLTTLQKGLIKNYLTSFALTILLLLLL 601
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-350 4.79e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 192.43  E-value: 4.79e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPML------LTynygwFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAF 74
Cdd:MTH00066 249 MVVAGIFLLIRFHPLLennqtaLT-----ICLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAF 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  75 FHLLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNF 154
Cdd:MTH00066 324 FHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNS 403

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 155 LIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV-PYVIVLPWYL 233
Cdd:MTH00066 404 WALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFM 483

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 234 KFLTMFVVILGSYLGYLVSDFDYFYGLFSLSFlSFVNFVGsmwFMPFLSTNYISYLPLSAGHNLSKS-FDYGWGELLGGQ 312
Cdd:MTH00066 484 KLAALLVTLLGLLIALDLAKITSKTTPKTKMH-SFSNLLA---FFPTIIHRLSPKTNLNSGQNIATHlTDMTWYEKSGPK 559

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 494114708 313 GLYSFFLYMIDYIQSLYDSNFKVYLLTFIFWMFILFMF 350
Cdd:MTH00066 560 GLTNQQLPPIKTITNIQTGLIKTYLTLFLITLLLMLIL 597
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-350 6.25e-54

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 186.60  E-value: 6.25e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLltYNYGWFLLMIGCM----TMFMAgLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFH 76
Cdd:MTH00108 252 MVVAGVFLLIRFHPLM--ENNKTIQTLTLCLgaitTLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLH 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  77 LLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLI 156
Cdd:MTH00108 329 ICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWA 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 157 FFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYV-IVLPWYLKF 235
Cdd:MTH00108 409 LLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPqMTMPLYLKL 488

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 236 LTMFVVILGSYLGYLVSDFDYFYGLFSLSFLSfvNFVGSMWFMPFLSTNYISYLPLSAGHNLSKS-FDYGWGELLGGQGL 314
Cdd:MTH00108 489 TALAVTILGFILALELNLLTNNLKFKYPSNTF--KFSNMLGYFPTIMHRLPPYMNLTMSQKLASMlLDLIWLEKILPKTI 566

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 494114708 315 YSFFLYMidyiqSLYDSN----FKVYLLTFIFWMFILFMF 350
Cdd:MTH00108 567 SLIQMKA-----STTISNqkglIKLYFLSFLITLTLSLLL 601
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-187 8.30e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 173.09  E-value: 8.30e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPML------LTynygwFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAF 74
Cdd:MTH00137 257 MVVAGIFLLIRLSPLMennqtaLT-----TCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAF 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  75 FHLLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNF 154
Cdd:MTH00137 332 LHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNA 411

                        170       180       190
                 ....*....|....*....|....*....|...
gi 494114708 155 LIFFLYFISTGLTASYSFRLFYYSMMGDNNFYP 187
Cdd:MTH00137 412 WALTLTLIATSFTAVYSLRVVFFVSMGHPRFNP 444
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-251 1.70e-48

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 171.87  E-value: 1.70e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   2 VTAGVYLLIRFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:COG1009  254 VKAGVYLLARLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTH 333

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-IVCLSWVNFLIFFL 159
Cdd:COG1009  334 AFFKALLFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAV 412

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 160 YFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLP 230
Cdd:COG1009  413 ALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHG 492

                        250       260
                 ....*....|....*....|.
gi 494114708 231 WYLKFLTMFVVILGSYLGYLV 251
Cdd:COG1009  493 LLLNALPLLLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-251 2.52e-43

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 157.83  E-value: 2.52e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708    1 LVTAGVYLLIRFSPM-LLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:TIGR01974 255 MVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMT 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   80 HALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFL 159
Cdd:TIGR01974 335 HAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVA 414

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  160 YFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV----------- 228
Cdd:TIGR01974 415 GLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhh 494

                         250       260
                  ....*....|....*....|...
gi 494114708  229 LPWYLKFLTMFVVILGSYLGYLV 251
Cdd:TIGR01974 495 VPALEIWSPTAVAILGILLAYLL 517
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-342 4.12e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 157.48  E-value: 4.12e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIR------FSPMLLTynygwFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAF 74
Cdd:MTH00210 253 MVTAGVFLIIRsgplfeGSPLALT-----IVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSL 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  75 FHLLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNF 154
Cdd:MTH00210 328 FHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIA 407

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 155 LIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFF--DDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWY 232
Cdd:MTH00210 408 FAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEVFIgvHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNS 487

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 233 LKFLTMFVVILGSYLGYLVSDFDYFY------GLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLS-KSFDYGW 305
Cdd:MTH00210 488 IKMIPLLFSLLGALLAFVIYNSMVFLikisrrGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHLITyRIIDRGL 567

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 494114708 306 GELLGGQGLYSFFLYMIDYIQSLYDSNFKVYLLTFIF 342
Cdd:MTH00210 568 LEIIGPRGISKVLIKLTQKISNLQSGMVFNYALIMII 604
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 2-250 1.86e-42

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 155.70  E-value: 1.86e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   2 VTAGVYLLIRFSPM-LLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:PRK06590 260 VTAGVYLVARMSPLfELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTH 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEiVCLSWVNFLIFFLY 160
Cdd:PRK06590 340 AFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAG 418

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 161 FISTGLTASYSFRLFYYSMMG---DNNFYPSyffdDKSYFISFGMIGLLFVAVFGG-----SFLSWLIFPVPYVIV---- 228
Cdd:PRK06590 419 LVGAFLTAFYSFRLIFLVFHGkekEKIHHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaeh 494

                        250       260
                 ....*....|....*....|...
gi 494114708 229 -LPWYLKFLTMFVVILGSYLGYL 250
Cdd:PRK06590 495 hLPVWVALLPLVVALAGIALAWL 517
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-348 4.55e-42

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 154.46  E-value: 4.55e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLltyNYGWFLLM----IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFH 76
Cdd:MTH00020 252 MVTAGVFLLIRSSPLF---EQAPLALIivtiVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFH 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  77 LLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLI 156
Cdd:MTH00020 329 LMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFA 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 157 FFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFD--DKSYFISFGMIGLLFVAVFGGSFLSWLI--FPVPYVIVLPWY 232
Cdd:MTH00020 409 YWLGCFSALLTAFYSIRLIYLTFLSNTNLKKAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLS 488

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 233 LKFLTMFVVILGSYLGYLVSDF--DYFYGLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLS-KSFDYGWGELL 309
Cdd:MTH00020 489 IKLLPVFLSLGGIGLVIILYFYssKTFRVPFSFIGRNSYTFLGSAWQFNYILNYFLIKKIWKGGHLISyRTIDKGVLELV 568

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 494114708 310 GGQGLYSFFLYMIDYIQSLY-DSNFKVYLLTFIFWMFILF 348
Cdd:MTH00020 569 GPKGISNFLIILTQGLSSLQsGLVFNYALVILIGVAIFIW 608
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 170-350 6.90e-42

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 144.23  E-value: 6.90e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  170 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVILGSYLGY 249
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  250 LVSDFDYFYGLFSLSFlSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLY 329
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170       180
                  ....*....|....*....|.
gi 494114708  330 DSNFKVYLLTFIFWMFILFMF 350
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLLLLLL 180
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-182 8.19e-33

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 128.99  E-value: 8.19e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNY-GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:PRK07376 269 MVAAGVFLVARMYPVFEQFPAvMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMT 348

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  80 HALFKALLFMCAGSMIHNLSD--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSw 151
Cdd:PRK07376 349 HAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA- 427

                        170       180       190
                 ....*....|....*....|....*....|.
gi 494114708 152 vNFLIFFLYFISTGLTASYSFRLFYYSMMGD 182
Cdd:PRK07376 428 -NPALWFVGFLTAGMTAFYMFRMYFLTFEGE 457
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-347 1.50e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 122.37  E-value: 1.50e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWFLLMI-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYSGLAFFHLL 78
Cdd:MTH00032 267 MVTAGVFLMIRSFPLFEKAPLTLLIITIfGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLV 346

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  79 THALFKALLFMCAGSMIHNLS-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCL-------- 149
Cdd:MTH00032 347 NHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmgipf 426

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 150 ----------------------------SWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFG 201
Cdd:MTH00032 427 gssllkiqgdigikkddrgsiggpegypSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKR 506

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 202 MIGLLFVAVFGGSFLSWLIFPV-----------PYVIVLPWYLKFLTMFVVILGSYLGYLVSDFDYFYGLFSLSFLSFVN 270
Cdd:MTH00032 507 VLTVLSLLCFGAIFVGYLIQDIligdiehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYS 586

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 494114708 271 FVGSMWFMPFLSTNYISYLPLSAGH-NLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLYDSNFKVYLLTFIFWMFIL 347
Cdd:MTH00032 587 FLGGAWQGDHLINKLVAIPLFSFGHwGIYKTLDRGWLELFGPQGISTIALRVSQFISNLQSGVISRYALVLLSFTIIF 664
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-163 8.58e-30

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 115.49  E-value: 8.58e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708    1 LVTAGVYLLIRFSPMLLTYNYGW--FLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSG---LAFF 75
Cdd:pfam00361 124 LVKAGGYGLIRRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIF 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   76 HLLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFL 155
Cdd:pfam00361 204 HLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFL 283


                  ....*...
gi 494114708  156 IFFLYFIS 163
Cdd:pfam00361 284 VLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-200 3.86e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 109.60  E-value: 3.86e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWFLL-MIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:CHL00025 269 MVAAGIFLVARLLPLFIVIPYIMNLIsLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLIT 348

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  80 HALFKALLFMCAGSMIHNL--------SDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDlilEIVCLSW 151
Cdd:CHL00025 349 HAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD---EILNDSW 425

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 494114708 152 VNFLIF-FLYFISTGLTASYSFRLFYYSMMGD---NNFYPSYFFDDKSYFISF 200
Cdd:CHL00025 426 LYSPIFaIIAWSTAGLTAFYMFRIYLLTFEGHlrvHFQNYSGKKNSSFYSISL 478
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-177 1.24e-24

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 103.69  E-value: 1.24e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYN----YGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSGL--A 73
Cdd:COG0651  247 LTKVGVYAILRVLTLLFGADpalfLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGtPLGLagA 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  74 FFHLLTHALFKALLFMCAGSMIHNLsDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVcLSWVN 153
Cdd:COG0651  327 LFHLLNHALAKALLFLAAGAIERAT-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGA 404

                        170       180
                 ....*....|....*....|....
gi 494114708 154 FLIFFLYFISTGLTASYSFRLFYY 177
Cdd:COG0651  405 WLLAAVLLLSSLLTLAYFVRIFGR 428
PRK12650 PRK12650
DUF4040 family protein;
1-145 1.68e-23

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 101.66  E-value: 1.68e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPmLLTYNYGWFLLMIGC--MTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---GLAFF 75
Cdd:PRK12650 250 VVKAGIYLLLRFSP-VFHDVAVWNWLLIIVgmITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVV 328

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  76 HLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 145
Cdd:PRK12650 329 HTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-303 2.48e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 100.76  E-value: 2.48e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:MTH00095 206 LVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSH 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLY 160
Cdd:MTH00095 286 ALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMF 365

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 161 FISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIglLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFV 240
Cdd:MTH00095 366 FFSVFLTFGYSYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLV--FFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLFM 443

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 494114708 241 VILGSYLGYLVSDFDYFYGLFSLSFLSFVNFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDY 303
Cdd:MTH00095 444 IMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYKGFNFFSSFSFFFFS 506
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-181 1.03e-20

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 92.63  E-value: 1.03e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   2 VTAGVYLLIRFS------PMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSGL-- 72
Cdd:PRK08375 245 TKVAVYALIRIYftvfggDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLtPLALaa 324

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  73 AFFHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEIVCLSW 151
Cdd:PRK08375 325 GLLHLLHHALMKGALFLAAGAIEVT-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQ 403

                        170       180       190
                 ....*....|....*....|....*....|
gi 494114708 152 VNFLIFFLyfISTGLTASYSFRLFYYSMMG 181
Cdd:PRK08375 404 WLVLAVLL--ASSLLALLYFLRIWYRAFFG 431
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-173 1.81e-20

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 92.56  E-value: 1.81e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYgWFLL--MIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySGLA----F 74
Cdd:PRK12648 249 MVKAGVFLLARLWPVLAGTEE-WFWIvgGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaI 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  75 FHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEIVCLS 150
Cdd:PRK12648 327 FHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLG 405

                        170       180
                 ....*....|....*....|...
gi 494114708 151 WVNFLIFFLYFISTGLTASYSFR 173
Cdd:PRK12648 406 SLDWLLPVAATLAGAFSVAYSLR 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-176 8.66e-20

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 90.75  E-value: 8.66e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNY-GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS-----GLAF 74
Cdd:PRK12644 245 MVKAGIYLVARLAPGFADVPVwRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalaGLAM 324

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  75 fhLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIV----CLS 150
Cdd:PRK12644 325 --LLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALG 401

                        170       180
                 ....*....|....*....|....*.
gi 494114708 151 WVNFLIFFLYFISTGLTASYSFRLFY 176
Cdd:PRK12644 402 PAGPVVLAGIVLGSILTVAYSLRFLW 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-145 1.05e-19

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 90.36  E-value: 1.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGL---AFFH 76
Cdd:PRK12647 237 MVKAGIYLLARLNPVLgGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLF 316

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 494114708  77 LLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 145
Cdd:PRK12647 317 LVAHSLYKGALFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12646 PRK12646
DUF4040 family protein;
1-145 1.59e-19

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 89.81  E-value: 1.59e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySGLA------ 73
Cdd:PRK12646 252 MVKAGIFLLFRFTPLLgLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIG-GGYAqhqqda 330

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  74 ------------FFHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKD 141
Cdd:PRK12646 331 iasiyvfvlfaaLFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKE 409


                 ....
gi 494114708 142 LILE 145
Cdd:PRK12646 410 MFLD 413
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 1-181 9.25e-19

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 87.67  E-value: 9.25e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPmLLTYNYGWFLLM--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGL------ 72
Cdd:PRK12645 252 MVKAGIYLVARFTP-IFAGSQVWFWTVtlVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgdd 330

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  73 ----------AFFHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL 142
Cdd:PRK12645 331 skiyaaaitaAIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEM 409

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 494114708 143 ILE---------IVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG 181
Cdd:PRK12645 410 FFEsmlnateanLFSLDTWGVLFPVIAWVASVFTFVYSIIFIFKTFFG 457
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-145 3.80e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 82.57  E-value: 3.80e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPmLLTYNYGWFLLM--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIlsMGYS-------- 70
Cdd:PRK12649 256 MVKAGVYLVARIHP-IFSGTEAWFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYTtyhepglg 332

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 494114708  71 -GLAFFHLLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 145
Cdd:PRK12649 333 vAAATFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 2-168 1.41e-16

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 80.72  E-value: 1.41e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   2 VTAGVYLLIRFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:PRK07390 263 VATGAWVLIKLQPVLaLSPVALTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTH 342

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILEIVCLSWVNFLIFFLY 160
Cdd:PRK07390 343 AIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGV 418


                 ....*....
gi 494114708 161 FIST-GLTA 168
Cdd:PRK07390 419 LLLVnALTA 427
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-176 6.09e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 78.47  E-value: 6.09e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRF------SPMLLTYNYGWFLLMI---GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS- 70
Cdd:PRK12667 265 VVNVGAYAIIRFlytifgISPSLIDFRAALSPILiilGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQl 344

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  71 --GLAFFHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVC 148
Cdd:PRK12667 345 glAAALFHIINHAIAKSLLFLASGVFIHA-AGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALL 423

                        170       180
                 ....*....|....*....|....*....
gi 494114708 149 LSwvNFLIFFLY-FISTGLTASYSFRLFY 176
Cdd:PRK12667 424 ES--GFYLPALVlLIASAISLVGYFRAWY 450
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-181 2.03e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 77.06  E-value: 2.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   4 AGVYLLIR-----FSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGL------ 72
Cdd:PRK08376 264 AGLYALARvlfsiYGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpama 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  73 ---------AFFHLLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLI 143
Cdd:PRK08376 344 sygeialagGIYHIVNHALYKALLFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 494114708 144 LEIVCLswVNFLIFFLYFISTGLTASYSFRLFYYSMMG 181
Cdd:PRK08376 423 YESSAL--FNPILGVIAMIGSVLTLASFVKVFHTAFFG 458
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 2-174 3.65e-13

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 70.18  E-value: 3.65e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   2 VTAGVYLLIRFSPMLLTYN----YGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSG---LAF 74
Cdd:PRK08377 249 VKAGLYAMARILYLMQNANgwssVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGV 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  75 FHLLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeIVCLSWVNF 154
Cdd:PRK08377 329 FHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYT 406

                        170       180
                 ....*....|....*....|
gi 494114708 155 LIFFLYFISTGLTASYSFRL 174
Cdd:PRK08377 407 WPVALVLGASVVEAVYYFRL 426
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 5-181 5.84e-13

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 69.34  E-value: 5.84e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   5 GVYLLIRFSPMLL---TYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSGL--AFFHLL 78
Cdd:COG1008  255 GGYGLLRFALPLFpeaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMV 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  79 THALFKALLFMCAGsMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeiVCLSWVNFLIFF 158
Cdd:COG1008  335 SHGLITAALFLLVG-VLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAI 411

                        170       180
                 ....*....|....*....|...
gi 494114708 159 LYFISTGLTASYSFRLFYYSMMG 181
Cdd:COG1008  412 LAALGLILTAAYLLWMYQRVFFG 434
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 5-150 1.22e-12

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 68.76  E-value: 1.22e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   5 GVYLLIRFSPMLL---TYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLA-------- 73
Cdd:PRK06521 256 AIYGILRVVFDLLgapGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFIAygmpllaa 335

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  74 ------FFHLLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIV 147
Cdd:PRK06521 336 laltaaLYHLLNHALFKSLLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSL 414


                 ...
gi 494114708 148 CLS 150
Cdd:PRK06521 415 LSS 417
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 6-145 1.46e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 68.60  E-value: 1.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   6 VYLLIRFSPMLLTYNYGW--FLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM--------------SILSMGY 69
Cdd:PRK08667 252 VYGLVRFLMDVLSPELWWgvLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILmgiglyvifgvyglDTLALLA 331

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 494114708  70 SGLAFFHLLTHALFKALLFMCAGSMIHNLSDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 145
Cdd:PRK08667 332 LGGALFHSLNHALFKSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-253 2.93e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 67.60  E-value: 2.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTH 80
Cdd:MTH00063 199 LVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSH 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  81 ALFKALLFMCAGSMIHNLSDSQDIR-----FMGSIVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILEIVCLSWVNFL 155
Cdd:MTH00063 279 GVSKCLLFMLVGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVS 353

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708 156 IFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDdksYFISFGMigllfvaVFGGSFLSWLIFP-VPYVIVLPWYLK 234
Cdd:MTH00063 354 LLLVVILCVFLSYLYSFRLCLILFGVKSSLSSGVRFL---FFNSGLM-------VFLWLFINYYVFLlLDEVVYLGVFIS 423

                        250
                 ....*....|....*....
gi 494114708 235 FLTMFVVILGSYLGYLVSD 253
Cdd:MTH00063 424 LVLLLVQLLGLLVGVLFYD 442
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-145 7.04e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 66.13  E-value: 7.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   2 VTAGVYLLIRFSPMLltYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGysglAFFHLlTHA 81
Cdd:PRK07234 227 VKAGVFPLVRCALDV--PGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHG 299

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 494114708  82 LFKALLFMCAGSmIHNLSDSQDIRFMGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 145
Cdd:PRK07234 300 LVKSTLFLCAGA-LPSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 22-210 7.96e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 65.99  E-value: 7.96e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  22 GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGYSGLAFFHLLTHALFKALLFMCAGSmIHNL 98
Cdd:PRK06589 280 FNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSL 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  99 SDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLS---WVNFLIFFLYFISTGLTASYSFRLF 175
Cdd:PRK06589 359 KKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLLKIL 438

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 494114708 176 YysmmgdNNFYPSYffdDKSYFISFGMIGLLFVAV 210
Cdd:PRK06589 439 S------SIYKPSL---SENSFITKSLPYLMQISV 464
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 21-137 1.06e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 66.00  E-value: 1.06e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  21 YGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLA--------------FFHLLTHALFKAL 86
Cdd:PRK08042 244 WGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSV 323

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 494114708  87 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 137
Cdd:PRK08042 324 LFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 1-144 1.55e-11

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 65.00  E-value: 1.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRF--SPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGL------ 72
Cdd:PRK06525 249 MVKVGVYIFARAiqSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSrlaleg 328

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 494114708  73 AFFHLLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 144
Cdd:PRK06525 329 SIAYIFNHAFAKSLFFLVAGALSYSCG-TRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-187 3.68e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 64.20  E-value: 3.68e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGW---FLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSGL--AF 74
Cdd:PRK07691 251 LTKVGVYAIARTFTLFFSHDTSFthyLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAI 330

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  75 FHLLTHALFKALLFMCAGSMIHnLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEiVCLSWVNF 154
Cdd:PRK07691 331 YYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE-GTFEAGFY 408

                        170       180       190
                 ....*....|....*....|....*....|...
gi 494114708 155 LIFFLYFISTGLTASYSFRLFYYSMMGDNNFYP 187
Cdd:PRK07691 409 VSGIIVLLSSLLVLYSVIKIFLKGFWGEPKGYD 441
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 22-176 4.76e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 63.86  E-value: 4.76e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  22 GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---GLAFFHLLTHALFKALLFMCAGSMIHNL 98
Cdd:PRK08668 272 NYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYRT 351

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 494114708  99 SDSQdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVcLSWVNFLIFFLYFISTGLTASYSFRLFY 176
Cdd:PRK08668 352 GTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
5-144 1.21e-10

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 62.60  E-value: 1.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   5 GVYLLIRFSP--MLLTYnygwfllMIGCMTMFMAGLgANFEFDLKKIIALSTLSQLGLMMSILSMGySGL----AFFHLL 78
Cdd:PRK12668 229 AVYALARAFPgtELLIY-------IGAAMAVYGVFF-ALLENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHAF 299

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 494114708  79 THALFKALLFMCAGSMIHNLSDSqDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 144
Cdd:PRK12668 300 NHILYKGLLFMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 5-182 2.72e-09

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 58.29  E-value: 2.72e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   5 GVYLLIRFS-PML--LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSM---GYSGlAFFHL 77
Cdd:PRK05846 257 GAYGLLRFSlPLFpdASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGnqlGIQG-AIFQM 335

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  78 LTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeiVCLSWVNFLIF 157
Cdd:PRK05846 336 ISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIA 412

                        170       180
                 ....*....|....*....|....*
gi 494114708 158 FLYFISTGLTASYSFRLFYYSMMGD 182
Cdd:PRK05846 413 FIATTGLILAAVYSLWLYQRVMFGP 437
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-93 4.77e-09

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 57.40  E-value: 4.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYG-WFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:PRK08168 241 VVNLGGFVLIRFAPLLEQAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVA 320

                         90
                 ....*....|....
gi 494114708  80 HALFKALLFMCAGS 93
Cdd:PRK08168 321 HSLYKAHAFLSASE 334
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-145 1.19e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 56.13  E-value: 1.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWFLLM-IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM----GYSGlAFF 75
Cdd:PRK12665 251 LTKVGVYAIIRTHTLLFPGGGLDTLLMvVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALstvaGLSG-AIY 329

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  76 HLLTHALFKALLFMCAGsMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 145
Cdd:PRK12665 330 YVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
5-184 5.73e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 54.19  E-value: 5.73e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   5 GVYLLIRFSPMLLTYNYG---WFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMS-ILSMGYSGL--AFFHLL 78
Cdd:PRK12663 252 GIYALIRVFTLLFPQEREllhPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAGIngAIFYLV 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  79 THALFKALLFMCAGSMIHnLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEiVCLSWVNFLIFF 158
Cdd:PRK12663 332 HDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ-GALDNGAYILLA 409

                        170       180
                 ....*....|....*....|....*.
gi 494114708 159 LYFISTGLTASYSFRLFYYSMMGDNN 184
Cdd:PRK12663 410 LMLITSLITMYSLFRIFFLAYWGDKD 435
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 1-93 3.48e-06

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 48.49  E-value: 3.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPmLLTYNYGWFLLMIGCMTMFMAGLGANF-EFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLT 79
Cdd:PRK08601 245 LVNAGGIMLTRFSP-LFHDDIAQILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLIL 323

                         90
                 ....*....|....
gi 494114708  80 HALFKALLFMCAGS 93
Cdd:PRK08601 324 HGLFKATLFLQSGS 337
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-140 4.72e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.19  E-value: 4.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   6 VYLLIRFSPMLLTYNYGWFLLMIGCMTMFMAGLG-------ANFEFDLKKIIALSTLSQLGLMMSILSMG-YSGL--AFF 75
Cdd:PRK12662 256 IYLIIRIVYDVFKANFVFTTLPFNNVFMILAALAivfgsvlAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVA 335

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 494114708  76 HLLTHALFKALLFMCAGSMIHNLsDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 140
Cdd:PRK12662 336 YIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-140 2.65e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 45.88  E-value: 2.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   4 AGVYLLIR-FSPMLLTYNYGWFLLM--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSMGYSGL--AFFHL 77
Cdd:COG1007  248 AAFAALLRlLVEAFPGLAADWQLLLavLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGyLLLGLAAGTPLGVsaALFYL 327

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 494114708  78 LTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 140
Cdd:COG1007  328 LAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 45-144 5.62e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.92  E-value: 5.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  45 DLKKIIALSTLSQLGLMMSILSMGySGLAFF----HLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVC 120
Cdd:PRK06458 304 DIKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLTGWG 381

                         90       100
                 ....*....|....*....|....
gi 494114708 121 FNVSSLSLCGMPFLAGFYSKDLIL 144
Cdd:PRK06458 382 LMLGALAIAGMPPFGVFISEFLIL 405
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 15-221 7.51e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 44.04  E-value: 7.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  15 MLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSM 94
Cdd:MTH00160 136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  95 IHNLSDSQDIRFMGSIVNFMpltsvcFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLyFISTGLTASYSFRL 174
Cdd:MTH00160 216 IFFLNQLFNSNNKSKKIKFL------LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL-IMSSLITLYFYLRI 288

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 494114708 175 FYYSMMGdNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIF 221
Cdd:MTH00160 289 SYSSLML-NYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-139 1.03e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.87  E-value: 1.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWF---LLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM----SILSMGYSGlA 73
Cdd:PRK12561 227 LLKMGGYALIRFNVQMLPDAHVYFapaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLlgiaAFTDLGISG-A 305

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 494114708  74 FFHLLTHALFKALLFMCAGSM---IHNLSdsqdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 139
Cdd:PRK12561 306 MLQMISHGLIAAALFFLTGVTyerTHTLS----IPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 25-175 1.21e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 43.59  E-value: 1.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  25 LLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAF---FHLLTHALFKALLFMCAGsMIHNLSDS 101
Cdd:PRK08676 276 LIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRS 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 494114708 102 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EIVCLS-WVNFLIFFLYFISTGLTASYSFRLF 175
Cdd:PRK08676 355 DRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLLAASSFAIFLLKAF 430
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-221 3.96e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 42.02  E-value: 3.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  15 MLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS-----GLAFFHLLTHALFKALLFM 89
Cdd:PRK12664 194 LLLFFSGEEILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSsgvaiGILILQIVLSVVYQTLLFM 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  90 CAGSMIhNLSDSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EIVCLSWVNFLIFFLYFI-STGLT 167
Cdd:PRK12664 274 VADSVI-NRTRKFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLIThSIDTAGLTLVLYKKLFLIcSLLLF 351

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 494114708 168 ASYSFRLFYYSMMGDNNFYPSYffdDKSYFIS-FGMIGLLFVAVFGGSFLSWLIF 221
Cdd:PRK12664 352 ASVGLKFFWYAFISKSKSKPEA---EKVYIGSkLSMIILVLICVVLGMFNSYLLF 403
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 25-145 5.13e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 41.35  E-value: 5.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708  25 LLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSgLAFFHLLTHALFKALLFMcagsmIHNLSDSQDI 104
Cdd:MTH00112 154 LLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPK-LTLLTFYIYILMTTPMFL-----TLNTTSTKTL 227

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 494114708 105 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 145
Cdd:MTH00112 228 KDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQ 268
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
1-145 6.60e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.56  E-value: 6.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494114708   1 LVTAGVYLLIRFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---GLAFFHL 77
Cdd:PRK06277 245 LVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPlgiVAGIFHA 324

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 494114708  78 LTHALFKALLFMCAGSmIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 145
Cdd:PRK06277 325 INHVIYKSALFLGAGI-VSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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