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Conserved domains on  [gi|492316295|ref|WP_005807216|]
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MULTISPECIES: LPD11 domain-containing protein [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LPD11 pfam18824
Large polyvalent protein-associated domain 11; This is an alpha-helical domain with conserved ...
 24-91 1.67e-35

Large polyvalent protein-associated domain 11; This is an alpha-helical domain with conserved hydrophobic residues. It is found in polyvalent proteins of conjugative elements.


:

Pssm-ID: 436766  Cd Length: 69  Bit Score: 115.06  E-value: 1.67e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492316295  24 RFRYMLLARMQSDCEYYLDYGGRDPKRLWAGDEERQIDLMIKLHDSFKEGEKPQWLTMDKILEYKKEM 91
Cdd:pfam18824  2 EFQYMLLSRLRSDCEYYLGYGNRNEKHLWAGSVAEQIEKMKELWNSFPEDEKPEWLTWEQILEYERRM 69
 
Name Accession Description Interval E-value
LPD11 pfam18824
Large polyvalent protein-associated domain 11; This is an alpha-helical domain with conserved ...
 24-91 1.67e-35

Large polyvalent protein-associated domain 11; This is an alpha-helical domain with conserved hydrophobic residues. It is found in polyvalent proteins of conjugative elements.


Pssm-ID: 436766  Cd Length: 69  Bit Score: 115.06  E-value: 1.67e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492316295  24 RFRYMLLARMQSDCEYYLDYGGRDPKRLWAGDEERQIDLMIKLHDSFKEGEKPQWLTMDKILEYKKEM 91
Cdd:pfam18824  2 EFQYMLLSRLRSDCEYYLGYGNRNEKHLWAGSVAEQIEKMKELWNSFPEDEKPEWLTWEQILEYERRM 69
 
Name Accession Description Interval E-value
LPD11 pfam18824
Large polyvalent protein-associated domain 11; This is an alpha-helical domain with conserved ...
 24-91 1.67e-35

Large polyvalent protein-associated domain 11; This is an alpha-helical domain with conserved hydrophobic residues. It is found in polyvalent proteins of conjugative elements.


Pssm-ID: 436766  Cd Length: 69  Bit Score: 115.06  E-value: 1.67e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492316295  24 RFRYMLLARMQSDCEYYLDYGGRDPKRLWAGDEERQIDLMIKLHDSFKEGEKPQWLTMDKILEYKKEM 91
Cdd:pfam18824  2 EFQYMLLSRLRSDCEYYLGYGNRNEKHLWAGSVAEQIEKMKELWNSFPEDEKPEWLTWEQILEYERRM 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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