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Conserved domains on  [gi|492281085|ref|WP_005798279|]
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MULTISPECIES: phage minor head protein [Bacteroidales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG2369 COG2369
Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: ...
 95-204 2.53e-25

Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: prophages, transposons];


:

Pssm-ID: 441936 [Multi-domain]  Cd Length: 201  Bit Score: 102.03  E-value: 2.53e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492281085  95 ENGnrKTFERFLNDVRKI---DETYNSNYLRAEFTFVQ--ASAEMAAKWERFMQDG---DRYYLQYRTAGDAKVRPTHAE 166
Cdd:COG2369   64 EEG--TTLEEFRKDLEPIlakKGWGGGSKRRARTIYRTnlRTAYAAGRWARMQELGvkeARPYWRYRAVGDERTRPSHRA 141

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 492281085 167 MAGITLPASDPFWAEFYPPNGWGCRCSVVQVRKSKYPP 204
Cdd:COG2369  142 LDGKVLPLDDPFWGTHYPPNGWNCRCTVRALSEDDLER 179
LPD3 pfam18798
Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and ...
 284-381 1.74e-12

Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and beta fold. The secondary structure arrangement suggests it to be a member of the BECR fold. The domain is found in polyvalent proteins of both conjugative elements and phages/prophages.


:

Pssm-ID: 436745  Cd Length: 110  Bit Score: 63.49  E-value: 1.74e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492281085  284 KQIKKQAK-----PLQGTVITNNEFPFPVNISKRTLQEWTNQPYKfYHEKNLMLLDIKNVFAKAKYLGTADNHKGIPHLI 358
Cdd:pfam18798   1 KDLRKAAKewlrkNLQGKTIVNKDTGWEIRFSRKGIKKMLSGHFK-NEEHLRAVAAIPELIENAVLVGSEEPDKKKPNIK 79

                          90       100
                  ....*....|....*....|....*..
gi 492281085  359 QSHIFE--IEVRGEK--ALIIVREYDW 381
Cdd:pfam18798  80 AFHRFYapVEIDGKLytVKLTVRESEN 106
 
Name Accession Description Interval E-value
COG2369 COG2369
Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: ...
 95-204 2.53e-25

Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: prophages, transposons];


Pssm-ID: 441936 [Multi-domain]  Cd Length: 201  Bit Score: 102.03  E-value: 2.53e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492281085  95 ENGnrKTFERFLNDVRKI---DETYNSNYLRAEFTFVQ--ASAEMAAKWERFMQDG---DRYYLQYRTAGDAKVRPTHAE 166
Cdd:COG2369   64 EEG--TTLEEFRKDLEPIlakKGWGGGSKRRARTIYRTnlRTAYAAGRWARMQELGvkeARPYWRYRAVGDERTRPSHRA 141

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 492281085 167 MAGITLPASDPFWAEFYPPNGWGCRCSVVQVRKSKYPP 204
Cdd:COG2369  142 LDGKVLPLDDPFWGTHYPPNGWNCRCTVRALSEDDLER 179
Phage_Mu_F pfam04233
Phage Mu protein F like protein; Members of this family are found in double-stranded DNA ...
 122-195 5.68e-13

Phage Mu protein F like protein; Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).


Pssm-ID: 309383  Cd Length: 110  Bit Score: 64.71  E-value: 5.68e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492281085  122 RAEFTF-VQASAEM-AAKWERFMQD-GDRYYLQYRTAGDAKVRPTHAEMAGITLPASDPFWAEFYPPNGWGCRCSVV 195
Cdd:pfam04233  34 RLRTIArTEALRAYnAARYASQAAQkGVGKYKRYSAIKDSRTRPIHRALDGKIFKVDDPFWGTGAPPEDPNCRCVLI 110
LPD3 pfam18798
Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and ...
 284-381 1.74e-12

Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and beta fold. The secondary structure arrangement suggests it to be a member of the BECR fold. The domain is found in polyvalent proteins of both conjugative elements and phages/prophages.


Pssm-ID: 436745  Cd Length: 110  Bit Score: 63.49  E-value: 1.74e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492281085  284 KQIKKQAK-----PLQGTVITNNEFPFPVNISKRTLQEWTNQPYKfYHEKNLMLLDIKNVFAKAKYLGTADNHKGIPHLI 358
Cdd:pfam18798   1 KDLRKAAKewlrkNLQGKTIVNKDTGWEIRFSRKGIKKMLSGHFK-NEEHLRAVAAIPELIENAVLVGSEEPDKKKPNIK 79

                          90       100
                  ....*....|....*....|....*..
gi 492281085  359 QSHIFE--IEVRGEK--ALIIVREYDW 381
Cdd:pfam18798  80 AFHRFYapVEIDGKLytVKLTVRESEN 106
phageSPP1_gp7 TIGR01641
phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of ...
 121-198 4.70e-10

phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 213641  Cd Length: 108  Bit Score: 56.62  E-value: 4.70e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492281085  121 LRAEFTFVQAsaemAAKWERFMQDGDRYylQYRTAGDAKVRPTHAEMAGITLPASDPFWAEFYPPNGWGCRCSVVQVR 198
Cdd:TIGR01641  37 ARTETARIYN----QTKLERYKKAGPIY--EYIAIIDSRTRPICRALNGKIFKVDDAVPGVNAPPLHPNCRCTLAPVP 108
 
Name Accession Description Interval E-value
COG2369 COG2369
Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: ...
 95-204 2.53e-25

Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: prophages, transposons];


Pssm-ID: 441936 [Multi-domain]  Cd Length: 201  Bit Score: 102.03  E-value: 2.53e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492281085  95 ENGnrKTFERFLNDVRKI---DETYNSNYLRAEFTFVQ--ASAEMAAKWERFMQDG---DRYYLQYRTAGDAKVRPTHAE 166
Cdd:COG2369   64 EEG--TTLEEFRKDLEPIlakKGWGGGSKRRARTIYRTnlRTAYAAGRWARMQELGvkeARPYWRYRAVGDERTRPSHRA 141

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 492281085 167 MAGITLPASDPFWAEFYPPNGWGCRCSVVQVRKSKYPP 204
Cdd:COG2369  142 LDGKVLPLDDPFWGTHYPPNGWNCRCTVRALSEDDLER 179
Phage_Mu_F pfam04233
Phage Mu protein F like protein; Members of this family are found in double-stranded DNA ...
 122-195 5.68e-13

Phage Mu protein F like protein; Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).


Pssm-ID: 309383  Cd Length: 110  Bit Score: 64.71  E-value: 5.68e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492281085  122 RAEFTF-VQASAEM-AAKWERFMQD-GDRYYLQYRTAGDAKVRPTHAEMAGITLPASDPFWAEFYPPNGWGCRCSVV 195
Cdd:pfam04233  34 RLRTIArTEALRAYnAARYASQAAQkGVGKYKRYSAIKDSRTRPIHRALDGKIFKVDDPFWGTGAPPEDPNCRCVLI 110
LPD3 pfam18798
Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and ...
 284-381 1.74e-12

Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and beta fold. The secondary structure arrangement suggests it to be a member of the BECR fold. The domain is found in polyvalent proteins of both conjugative elements and phages/prophages.


Pssm-ID: 436745  Cd Length: 110  Bit Score: 63.49  E-value: 1.74e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492281085  284 KQIKKQAK-----PLQGTVITNNEFPFPVNISKRTLQEWTNQPYKfYHEKNLMLLDIKNVFAKAKYLGTADNHKGIPHLI 358
Cdd:pfam18798   1 KDLRKAAKewlrkNLQGKTIVNKDTGWEIRFSRKGIKKMLSGHFK-NEEHLRAVAAIPELIENAVLVGSEEPDKKKPNIK 79

                          90       100
                  ....*....|....*....|....*..
gi 492281085  359 QSHIFE--IEVRGEK--ALIIVREYDW 381
Cdd:pfam18798  80 AFHRFYapVEIDGKLytVKLTVRESEN 106
phageSPP1_gp7 TIGR01641
phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of ...
 121-198 4.70e-10

phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 213641  Cd Length: 108  Bit Score: 56.62  E-value: 4.70e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492281085  121 LRAEFTFVQAsaemAAKWERFMQDGDRYylQYRTAGDAKVRPTHAEMAGITLPASDPFWAEFYPPNGWGCRCSVVQVR 198
Cdd:TIGR01641  37 ARTETARIYN----QTKLERYKKAGPIY--EYIAIIDSRTRPICRALNGKIFKVDDAVPGVNAPPLHPNCRCTLAPVP 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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