NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|491073612|ref|WP_004935234|]
View 

MULTISPECIES: glycogen synthase [Enterobacterales]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
GlgS super family cl23912
Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in ...
 17-68 3.68e-08

Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them.


The actual alignment was detected with superfamily member PRK02922:

Pssm-ID: 420087  Cd Length: 67  Bit Score: 45.18  E-value: 3.68e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 491073612 17 DFLASSIALMEWQGRQIDAGQVAGNMSEQQSRLFFARLNYFRQLYQAASAAE 68
Cdd:PRK02922 13 DFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWYCQQMMQARELE 64
 
Name Accession Description Interval E-value
PRK02922 PRK02922
cell surface composition regulator GlgS;
17-68 3.68e-08

cell surface composition regulator GlgS;


Pssm-ID: 179501  Cd Length: 67  Bit Score: 45.18  E-value: 3.68e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 491073612 17 DFLASSIALMEWQGRQIDAGQVAGNMSEQQSRLFFARLNYFRQLYQAASAAE 68
Cdd:PRK02922 13 DFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWYCQQMMQARELE 64
GlgS pfam08971
Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in ...
 17-69 1.13e-05

Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them.


Pssm-ID: 401064  Cd Length: 66  Bit Score: 38.81  E-value: 1.13e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 491073612  17 DFLASSIALMEWQGRQIDAGQVAGNMSEQQSRLFFARLN-YFRQLYQAASAA-EH 69
Cdd:pfam08971 12 DFLARSFARMHAEGRPVDINAVTGNMDEAHRQWFCKRYAlYCQQEAQAKSLElEH 66
 
Name Accession Description Interval E-value
PRK02922 PRK02922
cell surface composition regulator GlgS;
17-68 3.68e-08

cell surface composition regulator GlgS;


Pssm-ID: 179501  Cd Length: 67  Bit Score: 45.18  E-value: 3.68e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 491073612 17 DFLASSIALMEWQGRQIDAGQVAGNMSEQQSRLFFARLNYFRQLYQAASAAE 68
Cdd:PRK02922 13 DFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWYCQQMMQARELE 64
GlgS pfam08971
Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in ...
 17-69 1.13e-05

Glycogen synthesis protein; Members of this family are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them.


Pssm-ID: 401064  Cd Length: 66  Bit Score: 38.81  E-value: 1.13e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 491073612  17 DFLASSIALMEWQGRQIDAGQVAGNMSEQQSRLFFARLN-YFRQLYQAASAA-EH 69
Cdd:pfam08971 12 DFLARSFARMHAEGRPVDINAVTGNMDEAHRQWFCKRYAlYCQQEAQAKSLElEH 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH