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Conserved domains on  [gi|490866387|ref|WP_004728407|]
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MULTISPECIES: 50S ribosomal protein L28 [Vibrio]

Protein Classification

bL28 family ribosomal protein( domain architecture ID 10000741)

bL28 family ribosomal protein such as prokaryotic 50S ribosomal protein L28 which is part of the large ribosomal subunit (50S), and fungal mitochondrial 54S ribosomal protein L24 which is part of the mitochondrial large ribosomal subunit (54S)

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmB COG0227
Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 ...
 1-68 2.67e-30

Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 439997  Cd Length: 68  Bit Score: 101.32  E-value: 2.67e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490866387  1 MSRVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVEsEKRFVKLRLTAKGMRIIDKKG-IDAVL 68
Cdd:COG0227   1 MSRVCEITGKGPMFGNNVSHSNRKTKRRFLPNLQKVRVWVD-SGRPVRLRVSTRCLRTIDKKGkVDRAL 68
 
Name Accession Description Interval E-value
RpmB COG0227
Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 ...
 1-68 2.67e-30

Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439997  Cd Length: 68  Bit Score: 101.32  E-value: 2.67e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490866387  1 MSRVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVEsEKRFVKLRLTAKGMRIIDKKG-IDAVL 68
Cdd:COG0227   1 MSRVCEITGKGPMFGNNVSHSNRKTKRRFLPNLQKVRVWVD-SGRPVRLRVSTRCLRTIDKKGkVDRAL 68
Ribosomal_L28 pfam00830
Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and ...
 3-60 3.91e-25

Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and chloroplasts. The L24 protein from yeast also contains a region of similarity to prokaryotic L28 proteins. L24 from yeast is also found in the large ribosomal subunit


Pssm-ID: 459953  Cd Length: 58  Bit Score: 87.83  E-value: 3.91e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490866387   3 RVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVESEKRFVKLRLTAKGMRIID 60
Cdd:pfam00830  1 RRCGLTGKGPQFGNNVSHSKNKTKRRWKPNLQKKRLWSEELGRFVRLRVSTRALRTID 58
L28 TIGR00009
ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ...
 1-58 5.86e-20

ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272851  Cd Length: 56  Bit Score: 74.99  E-value: 5.86e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490866387   1 MSRVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVESekRFVKLRLTAKGMRI 58
Cdd:TIGR00009  1 MSRKCELTGKGPLSGNNVSHSHRKTKRRFKPNLQKKRVWVPG--RFKRLRVSAKCLRT 56
rpl28 CHL00112
ribosomal protein L28; Provisional
 1-62 5.51e-09

ribosomal protein L28; Provisional


Pssm-ID: 177037  Cd Length: 63  Bit Score: 47.23  E-value: 5.51e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490866387  1 MSRVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVESEKRFVKLRLTAKGMRIIDKK 62
Cdd:CHL00112  1 MSKKCQLTGKKANNGYTVSHSHKRTKKLQKVNLQTKKIWSNTQNRWVKLKISTKAIKTLKKK 62
 
Name Accession Description Interval E-value
RpmB COG0227
Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 ...
 1-68 2.67e-30

Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439997  Cd Length: 68  Bit Score: 101.32  E-value: 2.67e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490866387  1 MSRVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVEsEKRFVKLRLTAKGMRIIDKKG-IDAVL 68
Cdd:COG0227   1 MSRVCEITGKGPMFGNNVSHSNRKTKRRFLPNLQKVRVWVD-SGRPVRLRVSTRCLRTIDKKGkVDRAL 68
Ribosomal_L28 pfam00830
Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and ...
 3-60 3.91e-25

Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and chloroplasts. The L24 protein from yeast also contains a region of similarity to prokaryotic L28 proteins. L24 from yeast is also found in the large ribosomal subunit


Pssm-ID: 459953  Cd Length: 58  Bit Score: 87.83  E-value: 3.91e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490866387   3 RVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVESEKRFVKLRLTAKGMRIID 60
Cdd:pfam00830  1 RRCGLTGKGPQFGNNVSHSKNKTKRRWKPNLQKKRLWSEELGRFVRLRVSTRALRTID 58
L28 TIGR00009
ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ...
 1-58 5.86e-20

ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272851  Cd Length: 56  Bit Score: 74.99  E-value: 5.86e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490866387   1 MSRVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVESekRFVKLRLTAKGMRI 58
Cdd:TIGR00009  1 MSRKCELTGKGPLSGNNVSHSHRKTKRRFKPNLQKKRVWVPG--RFKRLRVSAKCLRT 56
rpl28 CHL00112
ribosomal protein L28; Provisional
 1-62 5.51e-09

ribosomal protein L28; Provisional


Pssm-ID: 177037  Cd Length: 63  Bit Score: 47.23  E-value: 5.51e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490866387  1 MSRVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVESEKRFVKLRLTAKGMRIIDKK 62
Cdd:CHL00112  1 MSKKCQLTGKKANNGYTVSHSHKRTKKLQKVNLQTKKIWSNTQNRWVKLKISTKAIKTLKKK 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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