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Conserved domains on  [gi|490725078|ref|WP_004587611|]
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MULTISPECIES: protein translocase subunit SecF [Pseudoalteromonas]

Protein Classification

protein translocase subunit SecF( domain architecture ID 11417410)

protein translocase subunit SecF is part of the Sec protein translocase complex; SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA

Gene Ontology:  GO:0015450|GO:0043952|GO:0065002
TCDB:  2.A.6.4

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 4-295 2.65e-139

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 395.19  E-value: 2.65e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078   4 LSLGGKTLRFMSLRKVAMGFSTLLILASFASIFIKGLNFGLDFTGGTAVEVGFSQPADLKKVRSVLAENGFADASVQLFG 83
Cdd:COG0341    2 LFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  84 SSQDILVRLAPRGSEVKAEVigNQVITALKQADESVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFA 163
Cdd:COG0341   82 SDNDVLIRTPPLDGESAEEV--EKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 164 VGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLV 243
Cdd:COG0341  160 VGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTIN 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490725078 244 TSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAITMGVS 295
Cdd:COG0341  240 TSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
 
Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 4-295 2.65e-139

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 395.19  E-value: 2.65e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078   4 LSLGGKTLRFMSLRKVAMGFSTLLILASFASIFIKGLNFGLDFTGGTAVEVGFSQPADLKKVRSVLAENGFADASVQLFG 83
Cdd:COG0341    2 LFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  84 SSQDILVRLAPRGSEVKAEVigNQVITALKQADESVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFA 163
Cdd:COG0341   82 SDNDVLIRTPPLDGESAEEV--EKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 164 VGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLV 243
Cdd:COG0341  160 VGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTIN 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490725078 244 TSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAITMGVS 295
Cdd:COG0341  240 TSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 13-293 1.26e-100

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 311.78  E-value: 1.26e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  13 FMSLRKVAMGFSTLLILASFASIFIKGLNFGLDFTGGTAVEVGFSQPADLKKVRSVLAENGFADASVQLFGS-SQDILVR 91
Cdd:PRK13024 451 FVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQVLVR 530

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  92 LAPR--GSEVKAEVIGNQVITALKQADESVVMRrIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGA 169
Cdd:PRK13024 531 TYGIlsDDEEADTEIVAKLKNALKNDKGGTIPS-SETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAILA 609

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 170 LLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSITTI 249
Cdd:PRK13024 610 LLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLTTL 689

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 490725078 250 LVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAITMG 293
Cdd:PRK13024 690 LVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLE 733
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 39-285 2.52e-93

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 276.85  E-value: 2.52e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078   39 GLNFGLDFTGGTAVEVGFSQPADLKKVRSVLAENGFADASVQLFGSSQDILVRLAPRGSEVKAEVIgNQVITALKQADES 118
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELR-EALEEALKNVDPD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  119 VVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILA 198
Cdd:TIGR00966  80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  199 VIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGT 278
Cdd:TIGR00966 160 IIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGT 239


                  ....*..
gi 490725078  279 YSSVYVA 285
Cdd:TIGR00966 240 YSSIFIA 246
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 107-293 6.61e-70

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 215.16  E-value: 6.61e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  107 QVITALKQADESVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITVGLFSVLGL 186
Cdd:pfam02355   1 VVEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  187 EFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSITTILVLIALFVWGGQTIHGF 266
Cdd:pfam02355  81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160

                         170       180
                  ....*....|....*....|....*..
gi 490725078  267 ATALLFGVFIGTYSSVYVASSVAITMG 293
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLG 187
RND_1 NF037998
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ...
 129-217 6.95e-07

protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.


Pssm-ID: 468306  Cd Length: 1237  Bit Score: 50.93  E-value: 6.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  129 PSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDTI 208
Cdd:NF037998  949 PFTAYGQILQIAISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAI 1028


                  ....*....
gi 490725078  209 VVSDRIREN 217
Cdd:NF037998 1029 IILGKAKSL 1037
 
Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 4-295 2.65e-139

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 395.19  E-value: 2.65e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078   4 LSLGGKTLRFMSLRKVAMGFSTLLILASFASIFIKGLNFGLDFTGGTAVEVGFSQPADLKKVRSVLAENGFADASVQLFG 83
Cdd:COG0341    2 LFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  84 SSQDILVRLAPRGSEVKAEVigNQVITALKQADESVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFA 163
Cdd:COG0341   82 SDNDVLIRTPPLDGESAEEV--EKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 164 VGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLV 243
Cdd:COG0341  160 VGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTIN 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490725078 244 TSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAITMGVS 295
Cdd:COG0341  240 TSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 13-293 1.26e-100

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 311.78  E-value: 1.26e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  13 FMSLRKVAMGFSTLLILASFASIFIKGLNFGLDFTGGTAVEVGFSQPADLKKVRSVLAENGFADASVQLFGS-SQDILVR 91
Cdd:PRK13024 451 FVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQVLVR 530

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  92 LAPR--GSEVKAEVIGNQVITALKQADESVVMRrIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGA 169
Cdd:PRK13024 531 TYGIlsDDEEADTEIVAKLKNALKNDKGGTIPS-SETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAILA 609

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 170 LLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSITTI 249
Cdd:PRK13024 610 LLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLTTL 689

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 490725078 250 LVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAITMG 293
Cdd:PRK13024 690 LVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLE 733
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 39-285 2.52e-93

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 276.85  E-value: 2.52e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078   39 GLNFGLDFTGGTAVEVGFSQPADLKKVRSVLAENGFADASVQLFGSSQDILVRLAPRGSEVKAEVIgNQVITALKQADES 118
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELR-EALEEALKNVDPD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  119 VVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILA 198
Cdd:TIGR00966  80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  199 VIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGT 278
Cdd:TIGR00966 160 IIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGT 239


                  ....*..
gi 490725078  279 YSSVYVA 285
Cdd:TIGR00966 240 YSSIFIA 246
PRK14726 PRK14726
protein translocase subunit SecDF;
8-290 5.78e-86

protein translocase subunit SecDF;


Pssm-ID: 237805 [Multi-domain]  Cd Length: 855  Bit Score: 275.45  E-value: 5.78e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078   8 GKTLRFMSLRKVAMGFSTLLILASFASIFIKGLNFGLDFTGGTAVEVGFSQ-PADLKKVRSVLAENGFADASVQLFGSSQ 86
Cdd:PRK14726 544 GANIRFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQgNADIADIRARLNELNLGEVQVERFGSPR 623

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  87 DILVRLAPRGSEVKAEvigNQVITALKQA-DESVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVG 165
Cdd:PRK14726 624 DALIRIASQDGGENAE---QSAVTLVRGElEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFAVG 700

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 166 AVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTS 245
Cdd:PRK14726 701 AIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTS 780

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 490725078 246 ITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAI 290
Cdd:PRK14726 781 ATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLI 825
secF PRK13021
preprotein translocase subunit SecF; Reviewed
 17-304 1.31e-70

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 237274 [Multi-domain]  Cd Length: 297  Bit Score: 220.88  E-value: 1.31e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  17 RKVAMGFSTLLILASFASIFIKGLNFGLDFTGGTAVEVGFSQPADLKKVRSVLAENGFADASVqlfgSSQDILVRLAPRG 96
Cdd:PRK13021  10 RYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSV----ISASEPGRWVLRY 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  97 SEVKAEVIGNQVITALKQADESVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVII 176
Cdd:PRK13021  86 APADTAQSNVDIQQALAPLGTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 177 TVGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSITTILVLIALF 256
Cdd:PRK13021 166 VLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALW 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 490725078 257 VWGGQTIHGFATALLFGVFIGTYSSVYVASSVAITMGVSKEDLIPEVI 304
Cdd:PRK13021 246 IMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHYKVQVI 293
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 107-293 6.61e-70

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 215.16  E-value: 6.61e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  107 QVITALKQADESVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITVGLFSVLGL 186
Cdd:pfam02355   1 VVEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  187 EFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSITTILVLIALFVWGGQTIHGF 266
Cdd:pfam02355  81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160

                         170       180
                  ....*....|....*....|....*..
gi 490725078  267 ATALLFGVFIGTYSSVYVASSVAITMG 293
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLG 187
2A0604s01 TIGR00916
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ...
 124-282 1.67e-50

protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273336 [Multi-domain]  Cd Length: 192  Bit Score: 165.89  E-value: 1.67e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  124 IEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYS 203
Cdd:TIGR00916  34 VGTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYS 113

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490725078  204 LNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSV 282
Cdd:TIGR00916 114 VDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
PRK13023 PRK13023
protein translocase subunit SecDF;
13-294 2.60e-48

protein translocase subunit SecDF;


Pssm-ID: 171842 [Multi-domain]  Cd Length: 758  Bit Score: 172.11  E-value: 2.60e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  13 FMSLRKVAMGFSTL---LILASFASIfikGLNFGLDFTGGTAVEV-GFSQPADLKKVRSVLAENGFADASVQLFGSSQDI 88
Cdd:PRK13023 455 FMRLQFVTLGISVLacaIVVALFVNI---GFNYGIDFRGGSMVELqARNGDANLEDINERLAELNIDSARVLPAKSPRSA 531

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  89 LVRLAPRgsEVKAEVIGNQVITALKQADESVVMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVG 168
Cdd:PRK13023 532 LVIIGSQ--EVGDDAEQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVL 609

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 169 ALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSITT 248
Cdd:PRK13023 610 STLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVT 689

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 490725078 249 ILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAITMGV 294
Cdd:PRK13023 690 FLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGL 735
PRK12911 PRK12911
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 42-298 2.99e-34

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 171815 [Multi-domain]  Cd Length: 1403  Bit Score: 132.67  E-value: 2.99e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078   42 FGLDFTGGTAV-----EVGFSQPADLK-KVRSVLAENGFA--DASVQLFGSSQDILVRLAPRG-SEVKAEVIGnqvitAL 112
Cdd:PRK12911 1114 LGMDFKGGYALtldpsDVCEYDVEQMRsKLRKKFQQIGLSsrDFRIRTFDSSEKIKIYFSQNAlDRVEAIEGA-----GS 1188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  113 KQADE--SVVMRRIEFVGPSVGED-------------------LKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALL 171
Cdd:PRK12911 1189 EQSDHhlALVLGVLSDTGSDTSSEvfdatqnfwfkvsgqlsnkMRTQAVIALFGALGIILLYVSLRFEWRYAFSAICALI 1268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  172 HDVIITVGL-----FSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRIDDTIEIIDMSLTQTLNRTLVTSI 246
Cdd:PRK12911 1269 HDLLATCAVlvalhFFLQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILINDALQKTLGRTVMTTA 1348

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 490725078  247 TTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAITMgVSKED 298
Cdd:PRK12911 1349 TTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFM-VRKEE 1399
PRK08578 PRK08578
preprotein translocase subunit SecF; Reviewed
 21-275 7.63e-15

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 236302 [Multi-domain]  Cd Length: 292  Bit Score: 73.43  E-value: 7.63e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  21 MGFSTLLILASFASIFiKGLNFGLDFTGGTAVEVgFSQPADLKKVRSVLAENGFADASVqlfGSSQDILVRLAPrGSEVK 100
Cdd:PRK08578  24 LLLSLLLLGGTFATTG-SPVKLGIDFTGGTEITI-QTNDASPDELESALSGEPGVDVRK---GSGNGYIITFGS-GDDTD 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 101 AEVIGNQVITALKQADESVVMRRIEFVGPSVGEDLKEQGGLAMLTALI--CILIYVAFR-FEWRFAVgaVGALLHDVIIT 177
Cdd:PRK08578  98 VDKLADAVKEFFNVDSISELNYSEKQIGPTFGSQFQEQALKAVGFAFIgmAVVVFLIFRtPVPSLAV--ILSAFSDIIIA 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 178 VGLFSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIREnfRKVRIDDTI-EIIDMSLTQTLnrtlvTSITTILVL-IAL 255
Cdd:PRK08578 176 LALMNLFGIELSLATVAALLMLIGYSVDSDILLTTRVLK--RRGTFDESIkRAMRTGITMTL-----TTIAAMAVLyIVS 248

                        250       260
                 ....*....|....*....|
gi 490725078 256 FVWGGQTIHGFATALLFGVF 275
Cdd:PRK08578 249 TIPQAEVLANIAAVLIFGLL 268
secD TIGR01129
protein-export membrane protein SecD; Members of this family are highly variable in length ...
 127-285 4.64e-14

protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273456 [Multi-domain]  Cd Length: 397  Bit Score: 71.93  E-value: 4.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  127 VGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWrFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLND 206
Cdd:TIGR01129 238 IGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL-FGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDA 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  207 TIVVSDRIRENFRK-VRIDDTIE---------IIDmsltqtlnrtlvTSITTILVLIALFVWGGQTIHGFATALLFGVFI 276
Cdd:TIGR01129 317 NVLIYERIKEELRLgKSVRQAIEagferafstIFD------------ANITTLIAALILYVFGTGPVKGFAVTLAIGIIA 384


                  ....*....
gi 490725078  277 GTYSSVYVA 285
Cdd:TIGR01129 385 SLFTALVFT 393
SecD COG0342
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ...
 127-284 2.20e-13

Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440111 [Multi-domain]  Cd Length: 434  Bit Score: 70.14  E-value: 2.20e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 127 VGPSVGEDLKEQGGLAMLTALICILIYVAFRFeWRFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLND 206
Cdd:COG0342  261 VGPTLGADSIEKGLIAGLIGLLLVALFMLLYY-RLPGLVANIALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVDA 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 207 TIVVSDRIRENFRKVRiddtieiidmSLTQTLN-------RTLVTS-ITTILVLIALFVWGGQTIHGFATALLFGVFIGT 278
Cdd:COG0342  340 NVLIFERIREELRAGR----------SLRAAIEagfkrafSTILDAnVTTLIAAVVLFVLGTGPVKGFAVTLILGILISM 409


                 ....*.
gi 490725078 279 YSSVYV 284
Cdd:COG0342  410 FTAVPV 415
PRK14726 PRK14726
protein translocase subunit SecDF;
127-275 4.14e-11

protein translocase subunit SecDF;


Pssm-ID: 237805 [Multi-domain]  Cd Length: 855  Bit Score: 63.59  E-value: 4.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 127 VGPSVGEDLKEQGGLAMLTA--LICILIYVAFRFewrFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSL 204
Cdd:PRK14726 362 VGPGLGADSIAAGLVAGLIAaiLVAALMIGFYGF---LGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAV 438

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490725078 205 NDTIVVSDRIRENFRKVRidDTIEIIDMSLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVF 275
Cdd:PRK14726 439 DSNVLIYERIREEEKTGH--SLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGIL 507
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 125-285 5.05e-10

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 60.25  E-value: 5.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 125 EFVGPSVGEDLKEQGGLAML--TALICILIYVAFRFewrFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGY 202
Cdd:PRK13024 254 RSVGPTLGQDAIDAGIIAGIigFALIFLFMLVYYGL---PGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGM 330

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 203 SLNDTIVVSDRIRENFRKVR-----IDD-----TIEIIDmsltqtlnrtlvTSITTILVLIALFVWGGQTIHGFATALLF 272
Cdd:PRK13024 331 AVDANVLIFERIKEELRKGKslkkaFKKgfknaFSTILD------------SNITTLIAAAILFFFGTGPVKGFATTLII 398

                        170
                 ....*....|...
gi 490725078 273 GVFIGTYSSVYVA 285
Cdd:PRK13024 399 GILASLFTAVFLT 411
secD PRK08343
preprotein translocase subunit SecD; Reviewed
 123-277 5.71e-10

preprotein translocase subunit SecD; Reviewed


Pssm-ID: 236245 [Multi-domain]  Cd Length: 417  Bit Score: 59.89  E-value: 5.71e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 123 RIEFVGPSVGEDLKEQGGLAMLTALICILIYVAFRF-EWRFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIG 201
Cdd:PRK08343 247 GSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYrEPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIAVIG 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 202 YSLNDTIVVSDRI-------RENFRKVRIDDTIEIIdmsltqtlnrtLVTSITTILVLIALFVWGGQTIHGFATALLFGV 274
Cdd:PRK08343 327 TGVDDLIIITDEVlhegkvpSRKVFLSRIKRAFFII-----------FAAAATTIAAMSPLAVMGLGDLKGFAITTILGV 395


                 ...
gi 490725078 275 FIG 277
Cdd:PRK08343 396 LIG 398
PRK13023 PRK13023
protein translocase subunit SecDF;
127-274 1.99e-08

protein translocase subunit SecDF;


Pssm-ID: 171842 [Multi-domain]  Cd Length: 758  Bit Score: 55.39  E-value: 1.99e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 127 VGPSVGEDLKEQGGLAMLTALICILIYVAFRFEWrFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLND 206
Cdd:PRK13023 268 IASALGEDYASAAVLAALLAALVVGLFMVLSYGI-LGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDA 346

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490725078 207 TIVVSDRIRENFRKVRidDTIEIIDMSLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGV 274
Cdd:PRK13023 347 HILIYERVREDRRKGY--SVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGI 412
PRK12911 PRK12911
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 106-284 6.23e-08

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 171815 [Multi-domain]  Cd Length: 1403  Bit Score: 54.09  E-value: 6.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  106 NQVITALKQADESVVMRRI--EFVGPSVGEDLKEQG------GLAMLTalicILIYVAFRFEWRFAVGAVgaLLHDVIIT 177
Cdd:PRK12911  876 HRLATDLKSGAMSFVPEVLseEVISPELGKSQRTQGiisvclGLAVLI----VLMSVYYRFGGVIASGAV--LLNLLLIW 949

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  178 VGLfSVLGLEFDLTILAAILAVIGYSLNDTIVVSDRIRENFRKVRidDTIEIIDMSLTQTLNRTLVTSITTILVLIALFV 257
Cdd:PRK12911  950 AAL-QYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSR--SLSESVEAGYKKAFSAIFDSNLTTILASALLLM 1026

                         170       180
                  ....*....|....*....|....*..
gi 490725078  258 WGGQTIHGFATALLFGVFIGTYSSVYV 284
Cdd:PRK12911 1027 LDTGPIKGFALTLIIGIFSSMFTALFM 1053
2A067 TIGR00921
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ...
 55-308 6.42e-08

The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 273340 [Multi-domain]  Cd Length: 719  Bit Score: 53.69  E-value: 6.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078   55 GFSQPADLKKVRSVLAE-NGFADASVQLFGSSQDILVRLAPRGSEVKAEVIGNQVITALKQADESVVMRRIEFVGPSVGE 133
Cdd:TIGR00921 106 NFPLPVTMPEVRPLMSEyPRSKEMFLSKDHTVAIIIVQLKSDADYKQVVPIYNDVERSLERTNPPSGKFLDVTGSPAINY 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  134 DLKEQGG------LAMLTALICILIYVAFRFEWRFAVGAVgALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDT 207
Cdd:TIGR00921 186 DIEREFGkdmgttMAISGILVVLVLLLDFKRWWRPLLPLV-IILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYG 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  208 IVVSDRIRENFRKVRidDTIEIIDMSLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASS 287
Cdd:TIGR00921 265 IQTLNRYEEERDIGR--AKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPA 342

                         250       260
                  ....*....|....*....|.
gi 490725078  288 VAITMGVSKEDLIPEVIEKEG 308
Cdd:TIGR00921 343 LLQSIDIGREKVKKEIIAIGG 363
Sec_GG pfam07549
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ...
 34-60 2.24e-07

SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.


Pssm-ID: 462205 [Multi-domain]  Cd Length: 27  Bit Score: 46.13  E-value: 2.24e-07
                          10        20
                  ....*....|....*....|....*..
gi 490725078   34 SIFIKGLNFGLDFTGGTAVEVGFSQPA 60
Cdd:pfam07549   1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
130-276 5.10e-07

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 51.01  E-value: 5.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 130 SVGEDLKEQGGLAMLtaLICILIYVAFRfEWRFAVGAVGALLHDVIITVGLFSVLGLEFD-LTILAAILaVIGYSLNDTI 208
Cdd:COG1033  215 AIQSDLAIFFPLALL--LILLLLFLFFR-SLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSpLTILVPPL-LLAIGIDYGI 290

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490725078 209 VVSDRIRENFRKVRidDTIEIIDMSLTQTLNRTLVTSITTILVLIALFVWGGQTIHGFATALLFGVFI 276
Cdd:COG1033  291 HLLNRYREERRKGL--DKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLL 356
RND_1 NF037998
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ...
 129-217 6.95e-07

protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.


Pssm-ID: 468306  Cd Length: 1237  Bit Score: 50.93  E-value: 6.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078  129 PSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSLNDTI 208
Cdd:NF037998  949 PFTAYGQILQIAISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAI 1028


                  ....*....
gi 490725078  209 VVSDRIREN 217
Cdd:NF037998 1029 IILGKAKSL 1037
secD PRK05812
preprotein translocase subunit SecD; Reviewed
 127-284 8.63e-07

preprotein translocase subunit SecD; Reviewed


Pssm-ID: 235615 [Multi-domain]  Cd Length: 462  Bit Score: 50.22  E-value: 8.63e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 127 VGPSVGEDLKEQGGLAMLTALICILIYVAF--RFewrFAVGAVGALLHDVIITVGLFSVLGLEFDLTILAAILAVIGYSL 204
Cdd:PRK05812 287 IGPSLGADSIRAGLIAGLIGLALVLLFMILyyRL---FGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAV 363

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725078 205 NDTIVVSDRIRENFRKVRiddtieiidmSLTQTLN-------RTLVTS-ITTILVLIALFVWGGQTIHGFATALLFGVFI 276
Cdd:PRK05812 364 DANVLIFERIREELREGR----------SLRSAIEagfkrafSTILDSnITTLIAAIILYALGTGPVKGFAVTLGIGILT 433


                 ....*...
gi 490725078 277 GTYSSVYV 284
Cdd:PRK05812 434 SMFTAITV 441
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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