NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490652951|ref|WP_004517945|]
View 

MULTISPECIES: UPF0058 family protein [Haloarcula]

Protein Classification

UPF0058 family protein( domain architecture ID 10487127)

UPF0058 family protein similar to Methanocaldococcus jannaschii protein MJ1132

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
UPF0058 pfam01893
Uncharacterized protein family UPF0058; This archaebacterial protein has no known function.
 2-89 3.56e-40

Uncharacterized protein family UPF0058; This archaebacterial protein has no known function.


:

Pssm-ID: 426498  Cd Length: 86  Bit Score: 127.34  E-value: 3.56e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490652951   2 HKDELLELHEQMVTIMEYFrdDMDSVDPDLFDAYQELDVRPSDVHKSKSEHKHAVFVLGNSLATAMSEDEFSDAGRVSKR 81
Cdd:pfam01893  1 HKDELIQLHQFLVYVKKYL--ESENCDNDYFKEYDELNISPHHIHRSKAEHKHAIFLLGNAIAKAMSEDEPSSPERVSKR 78


                 ....*...
gi 490652951  82 MKELAEDA 89
Cdd:pfam01893 79 LKELAEKT 86
 
Name Accession Description Interval E-value
UPF0058 pfam01893
Uncharacterized protein family UPF0058; This archaebacterial protein has no known function.
 2-89 3.56e-40

Uncharacterized protein family UPF0058; This archaebacterial protein has no known function.


Pssm-ID: 426498  Cd Length: 86  Bit Score: 127.34  E-value: 3.56e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490652951   2 HKDELLELHEQMVTIMEYFrdDMDSVDPDLFDAYQELDVRPSDVHKSKSEHKHAVFVLGNSLATAMSEDEFSDAGRVSKR 81
Cdd:pfam01893  1 HKDELIQLHQFLVYVKKYL--ESENCDNDYFKEYDELNISPHHIHRSKAEHKHAIFLLGNAIAKAMSEDEPSSPERVSKR 78


                 ....*...
gi 490652951  82 MKELAEDA 89
Cdd:pfam01893 79 LKELAEKT 86
COG1745 COG1745
Uncharacterized metal-binding protein MJ1132, UPF0058 family [Function unknown];
2-93 2.03e-37

Uncharacterized metal-binding protein MJ1132, UPF0058 family [Function unknown];


Pssm-ID: 441351  Cd Length: 90  Bit Score: 120.77  E-value: 2.03e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490652951  2 HKDELLELHEQMVTIMEYFRDDmdSVDPDLFDAYQELDVRPSDVHKSKSEHKHAVFVLGNSLATAMSEDEFSDAGRVSKR 81
Cdd:COG1745   1 HKEELIHLHQLLVEVKKYFEEE--GNEEEDFKEYEELGISPTHIHKSKTEHKAAIFVLGNGIASAMSEDEFESAGRISKR 78

                        90
                ....*....|..
gi 490652951 82 MKELAEDAERKL 93
Cdd:COG1745  79 LKELADRAEKEI 90
 
Name Accession Description Interval E-value
UPF0058 pfam01893
Uncharacterized protein family UPF0058; This archaebacterial protein has no known function.
 2-89 3.56e-40

Uncharacterized protein family UPF0058; This archaebacterial protein has no known function.


Pssm-ID: 426498  Cd Length: 86  Bit Score: 127.34  E-value: 3.56e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490652951   2 HKDELLELHEQMVTIMEYFrdDMDSVDPDLFDAYQELDVRPSDVHKSKSEHKHAVFVLGNSLATAMSEDEFSDAGRVSKR 81
Cdd:pfam01893  1 HKDELIQLHQFLVYVKKYL--ESENCDNDYFKEYDELNISPHHIHRSKAEHKHAIFLLGNAIAKAMSEDEPSSPERVSKR 78


                 ....*...
gi 490652951  82 MKELAEDA 89
Cdd:pfam01893 79 LKELAEKT 86
COG1745 COG1745
Uncharacterized metal-binding protein MJ1132, UPF0058 family [Function unknown];
2-93 2.03e-37

Uncharacterized metal-binding protein MJ1132, UPF0058 family [Function unknown];


Pssm-ID: 441351  Cd Length: 90  Bit Score: 120.77  E-value: 2.03e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490652951  2 HKDELLELHEQMVTIMEYFRDDmdSVDPDLFDAYQELDVRPSDVHKSKSEHKHAVFVLGNSLATAMSEDEFSDAGRVSKR 81
Cdd:COG1745   1 HKEELIHLHQLLVEVKKYFEEE--GNEEEDFKEYEELGISPTHIHKSKTEHKAAIFVLGNGIASAMSEDEFESAGRISKR 78

                        90
                ....*....|..
gi 490652951 82 MKELAEDAERKL 93
Cdd:COG1745  79 LKELADRAEKEI 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH